These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9167#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 762 fasta sequence [TTCTCATCAAAATATATATATTTATAGTGTATGATTAAGGTTACTTTTTCTTTTGTCTGTTGATTATACAGTGAACATTTGCTTTTTTTCTCTCAATATTCAATTTCATTCCTATTCTTCTTCCTTTCCTTTTTTCTAAAAAAAAAACAAAGAACANTAGTACACACATAAATAAATATGTCTTTTGGTAAAGCTGTTGTAAAAAATGCTGATATGGAACCAGTTATGCAAGAAGATGCTGTACAAATAGCTGCAGTAGCAAGAGAAAAATATGAAGTAGACAAAGATATTGCAACATATATTAAACAACATTTTGATAGAAAATATGGTAGAACATGGCATTGTATAGTTGGTAAACAATATGGAAGTGATGTTTCCCACGAAGAACGATCCTTCATATACTTTTTTCTTGGAGATCGGGCAATTTTATTGTATAAATCGGGTTAAAAAGAACATCTTGAAATTATCATGACATCAATAGTTTTGATATAGATACCGATGTTAGCAAATGGCAATGTTCCAAAATAATAATATCATTACGTTTGATACTTTTAAAAGACATCTGTTTAATTTTTTTTCTATCTCAACAATGTATTCATAGTATATTTTGATGTTTAATTTTCTGTAGACTTCTTTTAACCTTTTAAAGTGGATAATATTATGTGTTGCTAGGGTATCATTTTAAAATATTAT-AATAGTCATGATTGTAAGTTTATTCCTACAATCATTACATTGGTATCTTTATATTCATAAACTGATCAT] [+] EMBL CD084286 [TTCTCATCAAAATATATATATTTATAGTGTATGATTAAGGTTACTTTTTCTTTTGTCTGTTGATTATACAGTGAACATTTGCTTTTTTTCTCTCAATATTCAATTTCATTCCTATTCTTCTTCCTTT ] [+] EMBL SM944 [ TTTTTTCTCTCAATATTCANTTTCATTCCTATTCTNCTTCCTTTCCTTTTTTCTAAAAAAAAAACAAAGAACANTAGTACACACATAANTAAATATGTCTTTGGGTAAAGCTGTTGTAAAAAATGCTGATATGGAACCAGTTATGCAAGAAGATGCTGTACAAATAGCTGCAGTAGCAAGAGAAAAATATGAAGTAGACAAAGATATTGCAACATATATTAAACAACATTTGGATAGAAAATATGGTAGAACATGGCATGGTATAGTTGGTAAACAATATGGAAGTGATGTTTCCCACGAAGAACGATCCTTCATATACTTTTTTCTTGGAGATCGGGCAATTTNATTGTATTAATCGGGTTAAAAAGAACATCTGGAAATTATCATGACA CAATAG TTTGGTATTGATACCGA GGTAGCAAATGG AAAGTCCCAAATTAATA ] [+] EMBL CD078620 [ CACATAAATAAATATGTCTTTTGGTAAAGCTGTTGTAAAAAATGCTGATATGGAACCAGTTATGCAAGAAGATGCTGTACAAATAGCTGCAGTAGCAAGAGAAAAATATGAAGTAGACAAAGATATTGCAACATATATTAAACAACATTTTGATAGAAAATATGGTAGAACATGGCATTGTATAGTTGGTAAACAATATGGAAGTGATGTTTCCCACGAAGAACGATCCTTCATATACTTTTTTCTTGGAGATCGGGCAATTTTATTGTATAAATCGGGTTAAAAAGAACATCTTGAAATTATCATGACATCAATAGTTTTGATATAGATACCGATGTTAGCAAATGGCAATGTTCCAAAATAATAATATCATTACGTTTGATACTTTTAAAAGACATCTGTTTAATTTTTTTTCTATCTCAACAATGTATTCATAGTATATTTTGATGTTTAATTTTCTGTAGACTTCTTTTAACCTTTTAAAGTGGATAATATTATGTGTTGCTAGGGTATCATTTTAAAATATTAT AATAGTCATGATTGTAAGTTTATTCCTACAATCATTACATTGGTATCTTTATATTCATAAACTGATCAT] [+] EMBL CD084287 [ CACATAAATAAATATGTCTTTTGGTAAAGCTGTTGTAAAAAATGCTGATATGGAACCAGTTATGCAAGAAGATGCTGTACAAATAGCTGCAGTAGCAAGAGAAAAATATGAAGTAGACAAAGATATTGCAACATATATTAAACAACATTTTGATAGAAAATATGGTAGAACATGGCATTGTATAGTTGGTAAACAATATGGAAGTGATGTTTCCCACGAAGAACGATCCTTCATATACTTTTTTCTTGGAGATCGGGCAATTTTATTGTATAAATCGGGTTAAAAAGAACATCTTGAAATTATCATGACATCAATAGTTTTGATATAGA ] [+] EMBL SMAA14130 [ AAAGAACATCTTGAAATTATCATGACATCAATAGTTTTGATATAGATACCGATGTTAGCAAATGGCAATGTTCCAAAATAATAATATCATTACGTTTGATACTTTTAAAAGACATCTGTTTAATTTTTTTTCTATCACAACAATGTATTCATAGTATATTTTGATGTTTAATTTTCTGTAGACTTCTTTTAACCTTTTAAAGTGGATAATATTATGTGTTGCTAGGGTATCATTT AAATATTATCAATAGTCAT ] consensusID : consensus_9167#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 594 fasta sequence [GGCCANAATTCGGCACGAGGAGCTGTTGTAAAAAATGCTGATATGGAACCAGTTATGCAAGAAGATGCTGTACAAATAGCTGCAGTAGCAAGAGAAAAATATGAAGTAGACAAAGATATTGCAACATATATTAAACAACATTTTGATAGAAAATATGGTAGAACATGGCATTGTATAGTTGGTAAACAATATGGAAGTGATGTTTCCCACGAAGAACGATCCTTCATATACTTTTTTCTTGGAGATCGGGCAATTTTATTGTATAAATCGGGTTAAAAAGAACATCTTGAAATTATCATGACATCAATAGTTTTGATATAGATACCGATGTTAGCAAATGGCAATGTTCCAAAATAATAATATCATTACGTTTGATACTTTTAAAAGACATCTGTTTAATTTTTTTTCTATCTCAACAATGTATTCATAGTATATTTTGATGTTTAATTTTCTGTAGACTTCTTTTAACCTTTTAAAAGTGGATAATATTATGTGTTGCTAGGGTATCATTTTAAAATATTATAATAGTCATGATTGTAAGTTTATTCCTACAATCATTACATTGTTATCTTTATATTCAATAAACTGATCAAT] [+] EMBL CD080873 [GGCCANAATTCGGCACGAGGAGCTGTTGTAAAAAATGCTGATATGGAACCAGTTATGCAAGAAGATGCTGTACAAATAGCTGCAGTAGCAAGAGAAAAATATGAAGTAGACAAAGATATTGCAACATATATTAAACAACATTTTGATAGAAAATATGGTAGAACATGGCATTGTATAGTTGGTAAACAATATGGAAGTGATGTTTCCCACGAAGAACGATCCTTCATATACTTTTTTCTTGGAGATCGGGCAATTTTATTGTATAAATCGGGTTAAAAAGAACATCTTGAAATTATCATGACATCAATAGTTTTGATATAGATACCGATGTTAGCAAATGGCAATGTTCCAAAATAATAATATCATTACGTTTGATACTTTTAAAAGACATCTGTTTAATTTTTTTTCTATCTCAACAATGTATTCATAGTATATTTTGATGTTTAATTTTCTGTAGACTTCTTTTAACCTTTTAAAAGTGGATAATATTATGTGTTGCTAGGGTATCATTTTAAAATATTATAATAGTCATGATTGTAAGTTTATTCCTACAATCATTACATTGTTATCTTTATATTCAATAAACTGATCAA ] [-] EMBL CD073084 [ ATATGGAACCAGTTATGCAAGAAGATGCTGTACAAATAGCTGCAGTAGCAAGAGAAAAATATGAAGTAGACAAAGATATTGCAACATATATTAAACAACATTTTGATAGAAAATATGGTAGAACATGGCATTGTATAGTTGGTAAACAATATGGAAGTGATGTTTCCCACGAAGAACGATCCTTCATATACTTTTTTCTTGGAGATCGGGCAATTTTATTGTATAAATCGGGTTAAAAAGAACATCTTGAAATTATCATGACATCAATAGTTTTGATATAGATACCGATGTTAGCAAATGGCAATGTTCCAAAATAATAATATCATTACGTTTGATACTTTTAAAAGACATCTGTTTAATTTTTTTTCTATCTCAACAATGTATTCATAGTATATTTTGATGTTTAATTTTCTGTAGACTTCTTTTAACCTTTTAAAAGTGGATAATATTATGTGTTGCTAGGGTATCATTTTAAAATATTATAATAGTCATGATTGTAAGTTTATTCCTACAATCATTACATTGTTATCTTTATATTCAATAAACTGATCAAT] consensusID : consensus_9167#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 184 fasta sequence [NAATTCGATTGCCCAAAATTCTNTACCTTGAAATTATCATGACATCAATAGTTTTGATATAGATACCGATGTTAGCAAATGGCAATGTTCCAAAATAATAATATCATTACGTTTGATACTTTTAAAAGACATCTGTTTAATTTTTTTTCTATCTCAACAATGTACTCATAGTATATTTTGATGT] [+] EMBL CD135335 [NAATTCGATTGCCCAAAATTCTNTACCTTGAAATTATCATGACATCAATAGTTTTGATATAGATACCGATGTTAGCAAATGGCAATGTTCCAAAATAATAATATCATTACGTTTGATACTTTTAAAAGACATCTGTTTAATTTTTTTTCTATCTCAACAATGTACTCATAGTATATTTTGATGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9167#0 TTCTCATCAAAATATATATATTTATAGTGTATGATTAAGGTTACTTTTTCTTTTGTCTGT 60 consensus_9167#1 ------------------------------------------------------------ consensus_9167#2 ------------------------------------------------------------ consensus_9167#0 TGATTATACAGTGAACATTTGCTTTTTTTCTCTCAATATTCAATTTCATTCCTATTCTTC 120 consensus_9167#1 ------------------------------------------------------------ consensus_9167#2 ------------------------------------------------------------ consensus_9167#0 TTCCTTTCCTTTTTTCTAAAAAAAAAACAAAGAACANTAGTACACACATAAATAAATATG 180 consensus_9167#1 --------------------------------------------------GGCCANAAT- 9 consensus_9167#2 ------------------------------------------------------------ consensus_9167#0 TCTTTTGGTAAAGCTGTTGTAAAAAATGCTGATATGGAACCAGTTATGCAAGAAGATGCT 240 consensus_9167#1 TCGGCACGAGGAGCTGTTGTAAAAAATGCTGATATGGAACCAGTTATGCAAGAAGATGCT 69 consensus_9167#2 ------------------------------------------------------------ consensus_9167#0 GTACAAATAGCTGCAGTAGCAAGAGAAAAATATGAAGTAGACAAAGATATTGCAACATAT 300 consensus_9167#1 GTACAAATAGCTGCAGTAGCAAGAGAAAAATATGAAGTAGACAAAGATATTGCAACATAT 129 consensus_9167#2 ------------------------------------------------------------ consensus_9167#0 ATTAAACAACATTTTGATAGAAAATATGGTAGAACATGGCATTGTATAGTTGGTAAACAA 360 consensus_9167#1 ATTAAACAACATTTTGATAGAAAATATGGTAGAACATGGCATTGTATAGTTGGTAAACAA 189 consensus_9167#2 ------------------------------------------------------------ consensus_9167#0 TATGGAAGTGATGTTTCCCACGAAGAACGATCCTTCATATACTTTTTTCTTGGAGATCGG 420 consensus_9167#1 TATGGAAGTGATGTTTCCCACGAAGAACGATCCTTCATATACTTTTTTCTTGGAGATCGG 249 consensus_9167#2 ------------------------------------------------------------ consensus_9167#0 GCAATTTTATTGTATAAATCGGGTTAAAAAGAACATCTTGAAATTATCATGACATCAATA 480 consensus_9167#1 GCAATTTTATTGTATAAATCGGGTTAAAAAGAACATCTTGAAATTATCATGACATCAATA 309 consensus_9167#2 ----------NAATTCGATTGCCCAAAATTCTNTACCTTGAAATTATCATGACATCAATA 50 * ** * *** * ************************ consensus_9167#0 GTTTTGATATAGATACCGATGTTAGCAAATGGCAATGTTCCAAAATAATAATATCATTAC 540 consensus_9167#1 GTTTTGATATAGATACCGATGTTAGCAAATGGCAATGTTCCAAAATAATAATATCATTAC 369 consensus_9167#2 GTTTTGATATAGATACCGATGTTAGCAAATGGCAATGTTCCAAAATAATAATATCATTAC 110 ************************************************************ consensus_9167#0 GTTTGATACTTTTAAAAGACATCTGTTTAATTTTTTTTCTATCTCAACAATGTATTCATA 600 consensus_9167#1 GTTTGATACTTTTAAAAGACATCTGTTTAATTTTTTTTCTATCTCAACAATGTATTCATA 429 consensus_9167#2 GTTTGATACTTTTAAAAGACATCTGTTTAATTTTTTTTCTATCTCAACAATGTACTCATA 170 ****************************************************** ***** consensus_9167#0 GTATATTTTGATGTTTAATTTTCTGTAGACTTCTTTTAACCTTTTAAA-GTGGATAATAT 659 consensus_9167#1 GTATATTTTGATGTTTAATTTTCTGTAGACTTCTTTTAACCTTTTAAAAGTGGATAATAT 489 consensus_9167#2 GTATATTTTGATGT---------------------------------------------- 184 ************** consensus_9167#0 TATGTGTTGCTAGGGTATCATTTTAAAATATTATAATAGTCATGATTGTAAGTTTATTCC 719 consensus_9167#1 TATGTGTTGCTAGGGTATCATTTTAAAATATTATAATAGTCATGATTGTAAGTTTATTCC 549 consensus_9167#2 ------------------------------------------------------------ consensus_9167#0 TACAATCATTACATTGGTATCTTTATATTCA-TAAACTGATCAT- 762 consensus_9167#1 TACAATCATTACATTGTTATCTTTATATTCAATAAACTGATCAAT 594 consensus_9167#2 --------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||