These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9175#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1004 fasta sequence [ATATAGCGCTCCCTCGCCATGACCTGGATGTTTGCTATGTTAGCGGTCCGTCGGTTGTTTAGTAAAAATGTCATTTTAAGACATTTGAGTGCTACTAAATCTGTTTCGTGTTCAAGTGCCAGATGTATTTCAACCGTTGAAAGCGCAAAGAAAAGAACTTACGAACCAAATTTGGCTCTTCGTTTTTCCGATAATACTGGCTTGACTGATATAGATAAATTTCTGCGTAAACAAAGGATTAAAGGTGCTTTGTACAGCTGCGAAGAAAATGAGCAGGCTTCAAAAGGTTTTTGGGCTCGGATTCTTAAAGCTGGGGATATGGACTTAGTCGAAAGATATTTAAATATGAGAGTCAAATTAGGACTCCGTGTTGACCCAGAAAAAGTCATAAAAGATATGAATGATGCTGGATTAACCCCTAACGCCTGGACATATGCCTCCTTTATTCATCAAAGTTGTGCTGTCGGAGATATGAATCAAACAAACTTTTACTTGCGTATGCTCCGAAATGCTGGATTCAAGCCCACTCGTTACATCTTTTCTCAGATTCTACACGGTTACGTGAAAGCTGGATTACCTGAGGAAGTTTCTTCTACGCAGGAAATACTATCTCAAATGGGTTTGTGGCCATCGAAGTTTGCCTATGAAGGCCTTTTGTCCGCTTACGCTGATATTGGTGACAAAGACAGTTTATTACGAACTCTGGATGAGGCTTACGCTGTACTCCCTTCAATAGAACAC-AT-AGAC-ACAGAATCCCGTCAAATCTCACCTGTTTTACTTTTGGATCTGTACACAAGATTAGTGTGTTCGCTGGGGTATACCAATGCAACGTGCAGTGAGATTTCAACAAAATTACTTACAATGAAAGATCACTTTCCGTTGGAGTTTGCTATTGACACTGTCAAAATACTCTTAGCGAAAGGACGCCCAGCTGCTGCTCTGGAAATTTTTAAAATAATACGTAATTATCCAGAACACCATGAATATTTATCCAAATTGGCTCT] [+] EMBL CD185906 [ATATAGCGCTCCCTCGCCATGACCTGGATGTTTGCTATGTTAGCGGTCCGTCGGTTGTTTAGTAAAAATGTCATTTTAAGACATTTGAGTGCTACTAAATCTGTTTCGTGTTCAAGTGCCAGATGTATTTCAACCGTTGAAAGCGCAAAGAAAAGAACTTACGAACCAAATTTGGCTCTTCGTTTTTCCGATAATACTGGCTTGACTGATATAGATAAATTTCTGCGTAAACAAAGGATTAAAGGTGCTTTGTACAGCTGCGAAGAAAATGAGCAGGCTTCAAAAGGTTTTTGGGCTCGGATTCTTAAAGCTGGGGATATGGACTTAGTCGAAAGATATTTAAATATGAGAGTCAAATTAGGAC ] [+] EMBL BF936779 [ TTAGCGGTCCGTCGGTTGTTTAGTAAAAATGTCATTTTAAGACATTTGAGTGCTACTAAATCTGTTTCGTGTTCAAGTGCCAGATGTATTTCAACCGTTGAAAGCGCAAAGAAAAGAACTTACGAACCAAATTTGGCTCTTCGTTTTTCCGATAATACTGGCTTGACTGATATAGATAAATTTCTGCGTAAACAAAGGATTAAAGGTGCTTTGTACAGCTGCGAAGAAAATGAGCAGGCTTCAAAAGGTTTTTGGGCTCGGATTCTTAAAGCTGGGGATATGGACTTAGTCGAAAGATATTTAAATATGAGAGTCAAATTAGGACTCCGTGTTGACCCAGAAAAAGTCATAAAAGATATGAATGATGCTGGATTAACCCCTAACGCCTGGACATATGCCTCCTTTATTCATCAAAGTTGTGCTGTCGGAGATATGAATCAAACAAACTTTTACTTGCGTATGCTCCGAAATGCTGGATTCAAGCCCACTCGTTACATCTTTTCTCAGATTCTACACGGTTACGTGAAAGCTGGATTACCTGAGGAAGTTTCTTCTACGCAGGAAATACTATCTCAAATGGGTTTGTGGCCATCGAAGTTTGCCTATGAAGGCCTTTTGTCCGCTTACGCTGATATTGGTGACAAAGACAGTTTATTACGAACTCTGGATGAGGCTTACGCTGTACTCCCTTCAATAGAACAC AT AGAC ACAGAATCCCGTC ] [+] EMBL AI975711 [ TAGCGGTCCGTCGGTTGTTTAGTAAAAATGTCATTTTAAGACATTTGAGTGCTACTAAATCTGTTTCGTGTTCAAGTGCCAGATGTATTTCAACCGTTGAAAGCGCAAAGAAAAGAACTTACGAACCAAATTTGGCTCTTCGTTTTTCCGATAATACTGGCTTGACTGATATAGATAAATTTCTGCGTAAACAAAGGATTAAAGGTGCTTTGTACAGCTGCGAAGAAAATGAGCAGGCTTCAAAAGGTTTTTGGGCTCGGATTCTTAAAGCTGGGGATATGGACTTAGTCGAAAGATATTTAAATATGAGAGTCAAATTAGGACTCCGTGTTGACCCAGAAAAAGTCATAAAAGATATGAATGATGCTGGATTAACCCCTAACGCCTGGACATATGCCTCCTTTATTCATCAAAGTTGTGCTGTCGGAGATATGAATCANACAAACTTTTACTTGCGTATGCTCCGAAATGCTG ] [-] EMBL CD136823 [ TAAATTTCTGCGTAAACAAAGGATTAAAGGTGCTTTGTACAGCTGCGAAGAAAATGAGCAGGCTTCAAAAGGTTTTTGGGCTCGGATTCTTAAAGCTGGGGATATGGACTTAGTCGAAAGATATTTAAATATGAGAGTCAAATTAGGACTCCGTGTTGACCCAGAAAAAGTCATAAAAGATATGAAGGATGCTGGATTAACCCCTAACGCCTGGACATATGCCTCCTTTATTCATCAAAGTTGTGCTGTCGGAGATATGAATCAAACAAACTTTTACTTGCGTATGCTCCGAAATGCTGGATTCAAGCCCACTCGTTACATCTTTTCTCAGATTCTACACGGTTACGTGAAAGCTGGATTACCTGAGGAAGTTTCTTCTACGCAGGAAATACTATCTCAAATGGGTTTGTGGCCATCG ] [+] EMBL CD072833 [ TTAGTCGAAAGATATTTAAATATGAGAGTCAAATTAGGACTCCGTGTTGACCCAGAAAAAGTCATAAAAGATATGAATGATGCTGGATTAACCCCTAACGCCTGGACATATGCCTCCTTTATTCATCAAAGTTGTGCTGTCGGAGATATGAATCATACAAACTTTTACTTGCGTATGCTCCGAAATGC ] [+] EMBL CD146812 [ ACATCTTTTCTCAGATTCTACACGGTTACGTGAAAGCTGGATTACCTGAGGAAGTTTCTTCTACGCAGGAAATACTATCTCAAATGGGTTTGTGGCCATCGAAGTTTGCCTATGAAGGCCTTTTGTCCGCTTACGCTGATATTGGTGACAGAGACAGTTTATTACGAACTCTGGATGAGGCTTACGCTGTACTCCCTTCAATAGAACACAATAAGACAACAGAATCCCGTCAAATCTCACCTGTTTTACTTTTGGATCTGTACACAAGATTAGTGTGTTCGCTGGGGTATACCAATGCAACGTGCAGTGAGATTTCAACAAAATTACTTACAATGAAAGATCACTTTCCGTTGGAGTTTGCTATTGACACTGTCAAAATACTCTTAGCGAAAGGACGCCCAGCTGCTGCTCTGGAAATTTTTAAAATAATACGTAATTATCCAGAACACCATGAATATTTATCCAAATTGGCTCT] consensusID : consensus_9175#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 468 fasta sequence [CTTCGTTTTTCCGATAATACTGGCTTGACTGATATAGATAAATTTCTGCGTAAACAAAGGATTAAAGGTGCTTTGTACAGCTGCGAAGAAAATGAGCAGGCTTCAAAAGGTTTTTGGGCTCGGATTCTTAAAGCTGGGGATATGGACTTAGTCGAAAGATATTTAAATATGAGAGTCAAATTAGGACTCCGTGTTGACCCAGAAAAAGTCATAAAAGATATGAATGATGCTGGATTAACCCCTAACGCCTGGACATATGCCTCCTTTATTCATCAAAGTTGTGCTGTCGGAGATATGAATCAAACAAAGTACCATGTCGATACATAACTTTAATTTCAGCTTTTACTTGCGTATGCTCCGAAATGCTGGATTCAAGCCCACTCGTTACATCTTTTCTCAGATTCTACACGGTTACGTGAAAGCTGGATTACCTGAGGAAGTTTCTTCTACGCAGGATATACTATCTCA] [+] EMBL CD097368 [CTTCGTTTTTCCGATAATACTGGCTTGACTGATATAGATAAATTTCTGCGTAAACAAAGGATTAAAGGTGCTTTGTACAGCTGCGAAGAAAATGAGCAGGCTTCAAAAGGTTTTTGGGCTCGGATTCTTAAAGCTGGGGATATGGACTTAGTCGAAAGATATTTAAATATGAGAGTCAAATTAGGACTCCGTGTTGACCCAGAAAAAGTCATAAAAGATATGAATGATGCTGGATTAACCCCTAACGCCTGGACATATGCCTCCTTTATTCATCAAAGTTGTGCTGTCGGAGATATGAATCAAACAAAGTACCATGTCGATACATAACTTTAATTTCAGCTTTTACTTGCGTATGCTCCGAAATGCTGGATTCAAGCCCACTCGTTACATCTTTTCTCAGATTCTACACGGTTACGTGAAAGCTGGATTACCTGAGGAAGTTTCTTCTACGCAGGATATACTATCTCA] consensusID : consensus_9175#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 336 fasta sequence [AATAAGACAACAGAATCCCGTCAAATCTCACCTGTTTTACTTTTGGATCTGTACACAAGATTAGTGTGTTCGCTGGGGTATACCAATGCAACGTGCAGTGAGGTTTCAACAAAATTACTTACAATGAAAGATCACTTTCCGTTGGAGTTTGCTATTGACACTGTCAAAATACTCTTAGCGAAAGGACGCCCAGCTGCTGCTCTGGAAATTTTTAAAATAACAGTAACTATCATTGAAAACAAAAGATAGCATGATTCATACAATTTTTTTCTTTGGAAAATGGATTGAACTCAAAAAGTATTTTAACTTAAACCTTTGAATCTTTGATTATTGTAA] [+] EMBL CD146417 [AATAAGACAACAGAATCCCGTCAAATCTCACCTGTTTTACTTTTGGATCTGTACACAAGATTAGTGTGTTCGCTGGGGTATACCAATGCAACGTGCAGTGAGGTTTCAACAAAATTACTTACAATGAAAGATCACTTTCCGTTGGAGTTTGCTATTGACACTGTCAAAATACTCTTAGCGAAAGGACGCCCAGCTGCTGCTCTGGAAATTTTTAAAATAACAGTAACTATCATTGAAAACAAAAGATAGCATGATTCATACAATTTTTTTCTTTGGAAAATGGATTGAACTCAAAAAGTATTTTAACTTAAACCTTTGAATCTTTGATTATTGTAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9175#0 ATATAGCGCTCCCTCGCCATGACCTGGATGTTTGCTATGTTAGCGGTCCGTCGGTTGTTT 60 consensus_9175#1 ------------------------------------------------------------ consensus_9175#2 ------------------------------------------------------------ consensus_9175#0 AGTAAAAATGTCATTTTAAGACATTTGAGTGCTACTAAATCTGTTTCGTGTTCAAGTGCC 120 consensus_9175#1 ------------------------------------------------------------ consensus_9175#2 ------------------------------------------------------------ consensus_9175#0 AGATGTATTTCAACCGTTGAAAGCGCAAAGAAAAGAACTTACGAACCAAATTTGGCTCTT 180 consensus_9175#1 ---------------------------------------------------------CTT 3 consensus_9175#2 ------------------------------------------------------------ consensus_9175#0 CGTTTTTCCGATAATACTGGCTTGACTGATATAGATAAATTTCTGCGTAAACAAAGGATT 240 consensus_9175#1 CGTTTTTCCGATAATACTGGCTTGACTGATATAGATAAATTTCTGCGTAAACAAAGGATT 63 consensus_9175#2 ----AATAAGACAACAGAATCCCGTCAAATCTCACCTGTTTTACTTTTGGATCTGTACAC 56 * ** ** * * * * ** * *** * * consensus_9175#0 AAAGGTGCTTTGTACAGCTGCGAAGAAAATGAGCAGGCTTCAAAAGGTTTTTGGGCTCGG 300 consensus_9175#1 AAAGGTGCTTTGTACAGCTGCGAAGAAAATGAGCAGGCTTCAAAAGGTTTTTGGGCTCGG 123 consensus_9175#2 AAGATTAGTGTGTTC-GCTGGGGTATACCAATGCAACGTGCAGTGAGGTTTCAA-CAAAA 114 ** * * *** * **** * * *** * ** * *** * consensus_9175#0 ATTCTTAAAGCTGGGGATATGGACTTAGTCGAAAGATATTTAAATATGAGAGTCAAATTA 360 consensus_9175#1 ATTCTTAAAGCTGGGGATATGGACTTAGTCGAAAGATATTTAAATATGAGAGTCAAATTA 183 consensus_9175#2 TTACTTACAATGAAAGAT-CACTTTCCGTTGGAGTTTGCT--ATTGACACTGTCAAAATA 171 * **** * *** * ** * * * * * * * ****** ** consensus_9175#0 GGACTC-CGTGTTGAC--CCAGAAAAAGTCATAAAAGATATGAATGATGCTGGATTAACC 417 consensus_9175#1 GGACTC-CGTGTTGAC--CCAGAAAAAGTCATAAAAGATATGAATGATGCTGGATTAACC 240 consensus_9175#2 CTCTTAGCGAAAGGACGCCCAGCTGCTGCTCTGGAAATTTTTAAAATAACAGTAACTATC 231 * ** *** **** * * ** * * ** * * * * * consensus_9175#0 CCTAACGCCTGGACATATGCCTCCTTTATTCATCAAAGTTGTGCTGTCGGAGATATGAAT 477 consensus_9175#1 CCTAACGCCTGGACATATGCCTCCTTTATTCATCAAAGTTGTGCTGTCGGAGATATGAAT 300 consensus_9175#2 ATTGAAAACAAAAGATAG-----CATGATTCATACAATTTTTTTCTTTGGAAA-ATGGAT 285 * * * * *** * * ****** ** ** * * *** * *** ** consensus_9175#0 CAAACAAA-------------------------------CTTTTACTTGCGTATGCTCCG 506 consensus_9175#1 CAAACAAAGTACCATGTCGATACATAACTTTAATTTCAGCTTTTACTTGCGTATGCTCCG 360 consensus_9175#2 TGAACTCA---------------AAAAGT---ATTTTAACTTAAACCTTTGAATCTTTGA 327 *** * *** ** * * ** * consensus_9175#0 AAATGCTGGATTCAAGCCCACTCGTTACATCTTTTCTCAGATTCTACACGGTTACGTGAA 566 consensus_9175#1 AAATGCTGGATTCAAGCCCACTCGTTACATCTTTTCTCAGATTCTACACGGTTACGTGAA 420 consensus_9175#2 TTATTGTAA--------------------------------------------------- 336 ** * consensus_9175#0 AGCTGGATTACCTGAGGAAGTTTCTTCTACGCAGGAAATACTATCTCAAATGGGTTTGTG 626 consensus_9175#1 AGCTGGATTACCTGAGGAAGTTTCTTCTACGCAGGATATACTATCTCA------------ 468 consensus_9175#2 ------------------------------------------------------------ consensus_9175#0 GCCATCGAAGTTTGCCTATGAAGGCCTTTTGTCCGCTTACGCTGATATTGGTGACAAAGA 686 consensus_9175#1 ------------------------------------------------------------ consensus_9175#2 ------------------------------------------------------------ consensus_9175#0 CAGTTTATTACGAACTCTGGATGAGGCTTACGCTGTACTCCCTTCAATAGAACACATAGA 746 consensus_9175#1 ------------------------------------------------------------ consensus_9175#2 ------------------------------------------------------------ consensus_9175#0 CACAGAATCCCGTCAAATCTCACCTGTTTTACTTTTGGATCTGTACACAAGATTAGTGTG 806 consensus_9175#1 ------------------------------------------------------------ consensus_9175#2 ------------------------------------------------------------ consensus_9175#0 TTCGCTGGGGTATACCAATGCAACGTGCAGTGAGATTTCAACAAAATTACTTACAATGAA 866 consensus_9175#1 ------------------------------------------------------------ consensus_9175#2 ------------------------------------------------------------ consensus_9175#0 AGATCACTTTCCGTTGGAGTTTGCTATTGACACTGTCAAAATACTCTTAGCGAAAGGACG 926 consensus_9175#1 ------------------------------------------------------------ consensus_9175#2 ------------------------------------------------------------ consensus_9175#0 CCCAGCTGCTGCTCTGGAAATTTTTAAAATAATACGTAATTATCCAGAACACCATGAATA 986 consensus_9175#1 ------------------------------------------------------------ consensus_9175#2 ------------------------------------------------------------ consensus_9175#0 TTTATCCAAATTGGCTCT 1004 consensus_9175#1 ------------------ consensus_9175#2 ------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||