These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9176#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 862 fasta sequence [AAAATATGATTATTTCATAAGAAAAATAAAAGTTAATTGGTCATATAAAAAGTTAATTAGGTTATTGTTTGTAAACAGA-CAACAAGAGGATAAATTCAACCGATCTGGCATTCAATATGAGATAGAATTTATGTGCGTTTTCTTTTTAAAGTTGTCCACTATGTGTAACAGTAGCCAGTCTAGAGATACAACTTTGTATTTTGGAATATGCATATGTTGAATGACTACGTTGATATAAATGAAAGAGATTAGCATAAACTGCATGATCGAATGCGATACCATGTTCCATTAAACGATTCACAACCGCTTCAGGTGTTAAAAAGAACAATT-CATATAATTGTTTTACACGAATTAAATCAGATTCATGTGTTTCAGTTAAAGTTGCCAAGGCTTGTTGTAGTCGATAAACATTTCGACACATTTTCTTATTACCATTTGAATTCATTCTTTCAATTTGTGGAATTAAACGTAATAATAATTGTGAAATGAAATCACCAAGACCATCGAAAATAAATCGAAATTTATGCCGACTAAATGTATGTATCGACAAATCTTTCACTTGTTCAATATATCCAAGAAAATCTGTCACATATTTATCAACATCAACATCATCTAATGGACACCAATATTTAACACCATCAGGTAATGTACCAAAATAGTTATATGCCTGTATTCTTACTTCTAAATAAGTCATTAATAGACATGCTTCTGAGAAACGATTTAATTCTTTTGCATAAGAAACAAATGAATTATAATAATAATCGGAAGGTGTACGTATTCCACCAACTACGGATTCACTTCTGTTAGCATTAATAGATACAGTAGAAGATTTTATTTGATATTTTTTTGAACCTTGAGTCCA] [+] EMBL AI975491 [AAAATATGATTATTTCATAAGAAAAATAAAAGTTAATTGGTCATATAAAAAGTTAATTAGGTTATTGTTTGTAAACAGA CAACAAGAGGATAAATTCAACCGATCTGGCATTCAATATGAGATAGAATTTATGTGCGTTTTCTTTTTAAAGTTGTCCACTATGTGTAACAGTAGCCAGTCTAGAGATACAACTTTGTATTTTGGAATATGCATATGTTGAATGACTACGTTGATATAAATGAAAGAGATTAGCATAAACTGCATGATCGAATGCGATACCATGTTCCATTAAACGATTCACAACCGCTTCAGGTGTTAAAAAGAACAATT CATATAATTGTTTTACACGAATTAAATCAGATTCATGTGTTTCAGTTAAAGTTGCCAAGGCTTGTTGTAGTCGATAAACATTTCGACACATTTTCTTATTACCATTTGAATTCATTCTTTCAATTTGTGGAATTAAACGTAATAATAATTGTGAAATGAAATCACCAAGACCATCGAAAATAAATCGAAATTTATGCCGACTAAATGTATGTATCGACAAATCTTTCACTTGTTCAATATATCCAAGAAAATCTGTCACATATTTATCAACATCAACATCATCTAATGGACACCAATATTTAACACCATCAGGTAATGTACCAAA ] [-] EMBL BE431214 [ ATGATTATTTCATAAGAAAAATAAAAGTTAATTGGTCATATAAAAAGTTAATTAGGTTATTGTTTGTAAACAGACCACCAAGAGGATAAATTCAACCGATCTGGCATTCAATATGAGATAGAATTTATGTGCG TTTCTTTTTAAAGTTGTCCACTATGTGTAACAGTAGCCAGTCTAGAGATACAACTTTGTATTTTGGAATATGCATATGTTGAATGACTACGTTGATATAAATGAAAGAGATTAGCATAAACTGCATGATCGAATGCGATACCATGTTCCATTAAACGATTCACAACCGCTTCAGGTGTTAAAAAGAACAATT CATATAATTGTTTTACACGAATTAAATCAGATTCATGTGTTTCAGTTAAAGTTG CAAGGCTTGTTGTAGTCGATAAACATTTCGACACATTTTCTTATTACCATTTGAATTCATTCTTTCAATTTGTGGAATT ] [-] EMBL AI977369 [ GAATATGCATATGTTGAATGACTACGTTGATATAAATGAAAGAGATTAGCATAANCTGCATGATCGAATGCGATACCATGTTCCATTAAACGATTCACAACCGCTTCAGGTGTTANAAAGAACAATT CATATAATTGTTTTACACGAATTAAATCAGATTCATGTGTTTCAGTTAAAGTTGCCAAGGCTTGTTGTAGTCGATAAACATTTCGACACATTTTCTTATTACCATTTGAATTCATTCTTTCAATTTGTGGAATTAAACGTAATAATAATTGTGAAATGAAATCACCAAGACCATCGAAAATAAATCGAAATTTATGCCGACTAAATGTATGTATCGACAAATCTTTCACTTGTTCAATATATCCAAGAAAATCTGTCACATATTTATCAACATCAACATCATCTAATGGACACCAATATTTAACACCATCAGGTAATGTACCAAAATAGTTATATGCCTGTATTCTTACTTCTAAATAAGTCATTAATAGACATGCTTCTGAGAAACGATTTAATTCTTTTGCATAAGAAACAAATGAATTATAATAATAATCGGA ] [-] EMBL CD115893 [ AAAGAGATTAGCATAAGCTGCATGATCGAATGCGATTCCATGTTCCATTAAACGATTCACAACCGCTTCAGGTGTTAAAAAGAACAATTCCATATAATTGTTTTACACGAATTAAATCAGATTCATGTGTTTCAGTTAAAGTTGCCAAGGCTTGTTGTAGTCGATAAACATTTCGACACATTTTCTTATTACCATTTGAATTCATTCTTTCAATTTGTGGAATTAAACGTAATAATAATTGTGAAATGAAATCACCAAGACCATCGAAAATAAATCGAAATTTATGCCGACTAAATGTATGTATCGACAAATCTTTCACTTGTTCAATATATCCAAGAAAATCTGTCACATATTTATCAACATCAACATCATCTAATGGACACCAATATCTAACACCATCAGGTAATGTACCAAAATAGTTATATGCCTGTATTCTTACTTCTAAATAAGTCATTAATAGACATGCTTCTGAGAAACGATTTAATTCTTTTGCATAAGAAACAAATGAATTATAATAATAATCGGAAGGTGTACGTATTCCACCAACTACGGATTCACTTCTGTTAGCATTAATAGATACAGTAGAAGATTTTATTTGATATTTTTTTGAACCTTGAGTCCA] [-] EMBL AI168856 [ CAG TAAAGTT CCAAGGC TG TGTAGTCGATAAACA TTCGACACA TTTCTTA TACCA TTGAA TCATTCTTCCAATTTGT GAATTAAACGTAATAATAATTGTGAAATGAAATCACCAAGACCATCGAAAATAAATCGAAATTTATGCCGACTAAATGTATGTATCGACAAATCTTTCACTTGTTCAATATATCCAAGAAAATCTGTCACATATTTATC ] [-] EMBL AI168863 [ ATTACCATTTGAA TCATTCTTTCAATTTGTGGAATTAAACGTAATAATAATTGTGAAATGAAATCACCAAGACCATCGAAAATAAATCGAAATTTATGCCGACTAAATGTATGTATCGACAAATCTTTCACTTGTTCAATATATCCAAGAAAATCTGTCACATATTTATCA ] [-] EMBL AI168857 [ ATTACCATTTGAA TCATTCTTTCAATTTGTGGAATTAAACGTAATAATAATTGTGAAATGAAATCACCAAGACCATCGAAAATAAATCGAAATTTATGCCGACTAAATGTATGTATCGACAAATCTTTCACTTGTTCAATATATCCAAGAAAATCTGTCACATATTTATCA ] consensusID : consensus_9176#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 277 fasta sequence [ATGTTCCATTAAACGATTCACAACCGCTTCAGGTGTTAAAAAGAACAATTCATATAATTGTTTTACACGAATTAAATCAGATTCATGTGTTTCAGTTAAAGTTGCCAAGGCTTGTTGTAGTCGATAAACATTTCGACACCTAAATAATAGCAATTCGAAAAAAAAGGAAGTTAATTTTATTGCTCAGAATTCCTACTAAAAATTGGTGTTTCTTAAACAAATATTTCATCTAGAATAAATTCTAGCTTAGATCGATTCATGAATTCAACTAATAGAA] [-] EMBL CD158197 [ATGTTCCATTAAACGATTCACAACCGCTTCAGGTGTTAAAAAGAACAATTCATATAATTGTTTTACACGAATTAAATCAGATTCATGTGTTTCAGTTAAAGTTGCCAAGGCTTGTTGTAGTCGATAAACATTTCGACACCTAAATAATAGCAATTCGAAAAAAAAGGAAGTTAATTTTATTGCTCAGAATTCCTACTAAAAATTGGTGTTTCTTAAACAAATATTTCATCTAGAATAAATTCTAGCTTAGATCGATTCATGAATTCAACTAATAGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9176#0 AAAATATGATTATTTCATAAGAAAAATAAAAGTTAATTGGTCATATAAAAAGTTAATTAG 60 consensus_9176#1 ------------------------------------------------------------ consensus_9176#0 GTTATTGTTTGTAAACAGACAACAAGAGGATAAATTCAACCGATCTGGCATTCAATATGA 120 consensus_9176#1 ------------------------------------------------------------ consensus_9176#0 GATAGAATTTATGTGCGTTTTCTTTTTAAAGTTGTCCACTATGTGTAACAGTAGCCAGTC 180 consensus_9176#1 ------------------------------------------------------------ consensus_9176#0 TAGAGATACAACTTTGTATTTTGGAATATGCATATGTTGAATGACTACGTTGATATAAAT 240 consensus_9176#1 ------------------------------------------------------------ consensus_9176#0 GAAAGAGATTAGCATAAACTGCATGATCGAATGCGATACCATGTTCCATTAAACGATTCA 300 consensus_9176#1 ----------------------------------------ATGTTCCATTAAACGATTCA 20 ******************** consensus_9176#0 CAACCGCTTCAGGTGTTAAAAAGAACAATTCATATAATTGTTTTACACGAATTAAATCAG 360 consensus_9176#1 CAACCGCTTCAGGTGTTAAAAAGAACAATTCATATAATTGTTTTACACGAATTAAATCAG 80 ************************************************************ consensus_9176#0 ATTCATGTGTTTCAGTTAAAGTTGCCAAGGCTTGTTGTAGTCGATAAACATTTCGACACA 420 consensus_9176#1 ATTCATGTGTTTCAGTTAAAGTTGCCAAGGCTTGTTGTAGTCGATAAACATTTCGACAC- 139 *********************************************************** consensus_9176#0 TTTTCTTATTACCATTTGAATTCATTCT---TTCAATTTGTGGAATTAAA--CGTAATAA 475 consensus_9176#1 CTAAATAATAGCAATTCGAAAAAAAAGGAAGTTAATTTTATTGCTCAGAATTCCTACTAA 199 * * ** * *** *** * ** * *** * * ** * ** *** consensus_9176#0 TAATTG-TGAAATGAAATCACCAAGACCATCGAAAATAAATCGAAATTTATGCCGACTAA 534 consensus_9176#1 AAATTGGTGTTTCTTAAACAAATATTTCATCTAGAATAAATTCTAGCTTAGATCGATTCA 259 ***** ** ** ** * **** * ******* * *** *** * * consensus_9176#0 ATGTATGTATCGACAAATCTTTCACTTGTTCAATATATCCAAGAAAATCTGTCACATATT 594 consensus_9176#1 TGAATTCAACTAATAGAA------------------------------------------ 277 * * * * * consensus_9176#0 TATCAACATCAACATCATCTAATGGACACCAATATTTAACACCATCAGGTAATGTACCAA 654 consensus_9176#1 ------------------------------------------------------------ consensus_9176#0 AATAGTTATATGCCTGTATTCTTACTTCTAAATAAGTCATTAATAGACATGCTTCTGAGA 714 consensus_9176#1 ------------------------------------------------------------ consensus_9176#0 AACGATTTAATTCTTTTGCATAAGAAACAAATGAATTATAATAATAATCGGAAGGTGTAC 774 consensus_9176#1 ------------------------------------------------------------ consensus_9176#0 GTATTCCACCAACTACGGATTCACTTCTGTTAGCATTAATAGATACAGTAGAAGATTTTA 834 consensus_9176#1 ------------------------------------------------------------ consensus_9176#0 TTTGATATTTTTTTGAACCTTGAGTCCA 862 consensus_9176#1 ---------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||