These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9184#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1314 fasta sequence [TTCCTGAACTTTGGTGACGAAAGTACAATCATTCATATTTGATATGAAAACAAGGGAGAAGTTTCAAACTTTCTCGTAGCAACTAAGAAGAATGTCAATACTTAACGTATCATATGGTCACAATAGTTTTTTTATACAATAAATAAACTATTCACATGATGATGATGATGGTAATAATAATAAGAATAATCCAGAAAAAATATTATAAAGTAAACAAGAAAGAAACTGAACTATATTGAACTTTCAAAGAAATTGGATAAAGTATCATGAAGCGATGATTTACTTGTTTTGATATTCTTAATTAGAATCTATATGAATTTCTCTAGAGCCTATGGATGAATGATCTTGTTTATTAAGATGATTATTAGATGATTGATCAGTTGAACTGATATCTGGTTGCTGTTGATGATTTGATCTGATTTGTGTTAGTTTGTTTTCAAGATTTTTAAGAGCATTTTGAACAGCCAAGATAACTTCACGACGTTTATTTCTAATGAATATTTCACCAGATGAATTGATCTTATCTAATCGTAACATAAGTTTTTCAAGTTTATCTTCAAGTAATAAATATGCT--TTTGTTTTAGATGAAGAAGTAAACCCGTTAATCTCAGTTTCTATTTCTGCAAGTTCACATTGAGCTTGTTCTATAAGAGAAAGTGGATCTAATCCTGTTGGTTGACATACATTTTCATTATTATCACTATTATTATTATCATTTGAAATTTTAACAGAAACAGATTTGATAGGAATTGATTCACTCTTCTCAGTGGAAGAATTTTGATTGCTTTTACGAATCAGACGATTGAGTTGCTGG-GGAATTATTCGGTTTTTGTTCATATTCACGATGGTTACCATTATTATTATTGTTATTCGAAGAGCTGATAGAATGTACCTTGATTGGTATTGGTTCACCAACATTATCATAATATGACTGAGTTTTACGTTGAATATTATCTCCTACATTGCCTACTTTAATATCTCCTGGATTAGAAGGATCGGTCACTGGTTCATTTCCAGAAAGATTATACTGTCGACGATTATTAAGAGATTCAGATGAATAAGACGGGACAGATTGTAAATTTTGTATAGTATTACTTTGAGTTTTAGACTTTCGCGGATCTTCCCATGTAGTTGATTTATTAATGTGATCGATAAAAAA-GGGAAACCAGTGATACTATCATATCCCATAGACCATCCAGGAGGTAAACCCTGTGAGCTCATAATTTGTACACCAGATAGAAGTCAGCTGGTTAGCTCGAAAGATTAACCGAAAAGCTTTGCAATGCAATCCAGCAACTTAGCGACTCACTTCAC] [-] EMBL AI618809 [TTCCTGAACTTTGGTGACGAAAGTACAATCATTCATATTTGATATGAAAACAAGGGAGAAGTTTCAAACTTTCTCGTAGCAACTAAGAAGAATGTCAATACTTAACGTATCATATGGTCACAATAGTTTTTTTATACAATAAATAAACTATTCACATGATGATGATGATGGTAATAATAATAAGAATAATCCAGAAAAAATATTATAAAGTAAACAAGAAAGAAACTGAACTATATTGAACTTTCAAAGAAATTGGATAAAGTATCATGAAGCGATGATTTACTTGTTTTGATATTCTTAATTAGAATCTATATGAATTTCTCTAGAGCCTATGGATGAATGATCTTGTTTATTAAGATGATTATTAGATGATTGATCAGTTGAACTGATATCTGGTTGCTGTTGATGATTTGATCTGATTTGTGTTAGTTTGTTTTCAAGATTTTTAAGAGCATTTTGAACAGCCAAGATAACTTCACGACGTTTATTTCTAATGAATATTTCACCAGATGAATTGATCTTATCTAATCGTAACATAAGTTTTTCAAGTTTATCTTCAAGTAATAAATATGCTAGCTTGTTTTA ] [+] EMBL CD124281 [ TCTTATCTAATCGTAACATAAGTTTTTCAAGTTTATCTTCAAGTAATAAATATGCT TTTGTTTTAGATGAAGAAGTAAACCCGTTAATCTCAGTTTCTATTTCTGCAAGTTCACATTGAGCTTGTTCTATAAGAGAAAGTGGATCTAATCCTGTTGGTTAACATACATTTTCATTATTATCACTATTATTATTATCATTTGAAATTTTAACAGAAACAGATTTGATAGGAATTGATTCACTCTTCTCAGTGGAAGAATTTTGATTGCTTTTACGAATCAGACGATTGAGTTGCTGG GGAATTATTCGGTTTTTGTTCATATTCACGATGGTTACCATTATTATTATTGTTATTCGAAGAGCTGATAGAATGTACCTTGATTGGTATTGGTTCACCAACATTATCATAATATGACTGAGTTTTACGTTGAATATTATCTCCTACATTGCCTACTTTAATACCTCCTGGATTAGAAGGATCGGTCACTGGTTCATTTCCAGAAAGATTATACTGTCGACGATTATTAAGAGATTCAGATGAATAAGACGGGACGGATTGTAAATTTTGTATAGTATTACTTTGAGTTTTAGACTTTCGCGGATCTTCCCATGTAGTTGATTTATTAATGTGATCGATAAAAAA GGGAAACCAGTGA ] [+] EMBL CD124221 [ TCTTATCTAATCGTAACATAAGTTTTTCAAGTTTATCTTCAAGTAATAAATATGCT TTTGTTTTAGATGAAGAAGTAAACCCGTTAATCTCAGTTTCTATTTCTGCAAGTTCACATTGAGCTTGTTCTATAAGAGAAAGTGGATCTAATCCTGTTGGTTGACATACATTTTCATTATTATCACTATTATTATTATCATTTGAAATTTTAACAGAAACAGATTTGATAGGAATTGATTCACTCTTCTCAGTGGAAGAATTTTGATTGCTTTTACGAATCAGACGATTGAGTTGCTGG GGAATTATTCGGTTTTTGTTCATATTCACGATGGTTACCATTATTATTATTGTTATTCGAAGAGCTGATAGAATGTACCTTGATTGGTATTGGTTCACCAACATTATCATAATATGACTGAGTTTTACGTTGAATATTATCTCCTACATTGCCTACTTTAATATCTCCTGGATTAGAAGGATCGGTCACTGGTTCATTTCCAGAAAGATTATACTGTCGACGATTATTAAGAGATTCAGATGAATAAGACGGGACAGATTGTAAATTTTGTATAGTATTACTTTGAGTTTTAGACTTTCGCGGATCTTCCCATGTAGTTGATTT ] [+] EMBL CD124292 [ TCTTATCTAATCGTAACATAAGTTTTTCAAGTTTATCTTCAAGTAATAAATATGCT TTTGTTTTAGATGAAGAAGTAAACCCGTTAATCTCAGTTTCTATTTCTGCAAGTTCACATTGAGCTTGTTCTATAAGAGAAAGTGGATCTAATCCTGTTGGTTGACATACATTTTCATTATTATCACTATTATTATTATCATTTGAAATCTTAACAGAAACAGATTTGATAGGAATTGATTCACTCTTCTCAGTGGAAGAATTTTGATTGCTTTTACGAATCAGACGATTGAGTTGCTGG GGAATTATTCGGTTTTTGTTCATATTCACGATGGTTACCATTATTATTATTGTTATTCGAAGAGCTGATAGAATGTACCTTGATTGGTATTGGTTCACCAACATTATCATAATATGACTGAGTTTTACGTTGAATATTATCTCCTACATTGCCTACTNTAATATCTCCTGGATTAGAAGGATCGGTCACTGGTTCATTT ] [-] EMBL CD194100 [ TGAG TGCTGGNNGAATATTTCGTTNNTTGTTCATATTCACGATGGTTACCATTATTATTATTGTTATTCGAAGAGCTGATAGAATGTACCTTGATTGGTATTGGTTCACCAACATTATCATAATATGACTGAGTTTTACGTTGAATATTATCTCCTACATTGCCTACTTTAATATCTCCTGGATTAGAAGGATCGGTCACTGGTTCATTTCCAGAAAGATTATACTGTCGACGATTATTAAGAGATTCAGATGAATAAGACGGGACAGATTGTAAATTTTGTATAGTATTACTTTGAGTTTTAGACTTTCGCGGATCTTCCCATGTAGTTGATTT ] [-] EMBL AI976875 [ CGGTTCTTGTTCATAGTTACGATGGTTACCATTATTATTATTGTTA TCGAAGAGCTGATAGAATGTACCTTGATTGGTATTGGTTCACCAACATTATCATAATATGACTGAGTTTTACGTTGAATATTATCTCCTACATTGCCTACTTTAATATCTCCTGGATTAGAAGGATCGGTCACTGGTTCATTTCCAGAAAGATTATACTGTCGACGATTATTAAGAGATTCAGATGAATAAGACGGGACAGATTGTAAATTTTGTATAGTATTACTTTGAGTTTTAGACTTTCGCGGATCTTCCCATGTAGTTGATTTATTAATGTGATCGATAAAAAAGGGGAAACCAGTGATACTATCATATCCCATAGACCATCCAGGAGGTAAACCCTGTGAGCTCATAATTTGTACACCAGATAGAAGTCAGCTGGTTAGCTCGAAAGATTAACCGAAAAGCTTTGCAATGCAATCCAGCAACTTAGCGACTCACTTCAC] [+] EMBL CD150062 [ ATTAATGTGATCGATAAAAAAGGGGAAACCAGTGATACTATCATATCCCATAGACCATCCAGGAGGTAAACCCTGTGAGCTCATAATTTGTACACCAGATAGAAGTCAGCTGGTTAGCTCGAAAGATTAACCGAAAAGCTTTGCAATGCAATCCA ] consensusID : consensus_9184#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 217 fasta sequence [TGGTATGCGAAAGTTACAATCATTCATATTTTGATATGGAAAGCAAGGGGAAAGTTTCAAACTTTTCTCGTAGCAACTAAGAAGAATGTTCAATACTTAACGTATTCATTATGGGTCACATTAGTTTTTTTTTATACAATAAATAAACTATTCACATGATGATGATGATGGTAATAATAATAATAAGATAATCCGAAAATTTTTATAAGGTAACAAG] [+] EMBL BE431224 [TGGTATGCGAAAGTTACAATCATTCATATTTTGATATGGAAAGCAAGGGGAAAGTTTCAAACTTTTCTCGTAGCAACTAAGAAGAATGTTCAATACTTAACGTATTCATTATGGGTCACATTAGTTTTTTTTTATACAATAAATAAACTATTCACATGATGATGATGATGGTAATAATAATAATAAGATAATCCGAAAATTTTTATAAGGTAACAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9184#0 TTCCTGAACTTTGGTG-ACGAAAGT-ACAATCATTCATATTT-GATATGAAAA-CAAGGG 56 consensus_9184#1 -----------TGGTATGCGAAAGTTACAATCATTCATATTTTGATATGGAAAGCAAGGG 49 **** ******* **************** ****** *** ****** consensus_9184#0 AGAAGTTTCAAACTTT-CTCGTAGCAACTAAGAAGAATGT-CAATACTTAACGTATCA-- 112 consensus_9184#1 GAAAGTTTCAAACTTTTCTCGTAGCAACTAAGAAGAATGTTCAATACTTAACGTATTCAT 109 ************** *********************** *************** consensus_9184#0 TATGG-TCACAATAGTTTTTTT--ATACAATAAATAAACTATTCACATGATGATGATGAT 169 consensus_9184#1 TATGGGTCACATTAGTTTTTTTTTATACAATAAATAAACTATTCACATGATGATGATGAT 169 ***** ***** ********** ************************************ consensus_9184#0 GGTAATAATAATAAGAATAATCCAGAAAAAATATTATAAAGTAAACAAGAAAGAAACTGA 229 consensus_9184#1 GGTAATAATAATAATAAGATAATCCGAAAATTTTTATAAGGTAA-CAAG----------- 217 ************** ** * **** * ****** **** **** consensus_9184#0 ACTATATTGAACTTTCAAAGAAATTGGATAAAGTATCATGAAGCGATGATTTACTTGTTT 289 consensus_9184#1 ------------------------------------------------------------ consensus_9184#0 TGATATTCTTAATTAGAATCTATATGAATTTCTCTAGAGCCTATGGATGAATGATCTTGT 349 consensus_9184#1 ------------------------------------------------------------ consensus_9184#0 TTATTAAGATGATTATTAGATGATTGATCAGTTGAACTGATATCTGGTTGCTGTTGATGA 409 consensus_9184#1 ------------------------------------------------------------ consensus_9184#0 TTTGATCTGATTTGTGTTAGTTTGTTTTCAAGATTTTTAAGAGCATTTTGAACAGCCAAG 469 consensus_9184#1 ------------------------------------------------------------ consensus_9184#0 ATAACTTCACGACGTTTATTTCTAATGAATATTTCACCAGATGAATTGATCTTATCTAAT 529 consensus_9184#1 ------------------------------------------------------------ consensus_9184#0 CGTAACATAAGTTTTTCAAGTTTATCTTCAAGTAATAAATATGCTTTTGTTTTAGATGAA 589 consensus_9184#1 ------------------------------------------------------------ consensus_9184#0 GAAGTAAACCCGTTAATCTCAGTTTCTATTTCTGCAAGTTCACATTGAGCTTGTTCTATA 649 consensus_9184#1 ------------------------------------------------------------ consensus_9184#0 AGAGAAAGTGGATCTAATCCTGTTGGTTGACATACATTTTCATTATTATCACTATTATTA 709 consensus_9184#1 ------------------------------------------------------------ consensus_9184#0 TTATCATTTGAAATTTTAACAGAAACAGATTTGATAGGAATTGATTCACTCTTCTCAGTG 769 consensus_9184#1 ------------------------------------------------------------ consensus_9184#0 GAAGAATTTTGATTGCTTTTACGAATCAGACGATTGAGTTGCTGGGGAATTATTCGGTTT 829 consensus_9184#1 ------------------------------------------------------------ consensus_9184#0 TTGTTCATATTCACGATGGTTACCATTATTATTATTGTTATTCGAAGAGCTGATAGAATG 889 consensus_9184#1 ------------------------------------------------------------ consensus_9184#0 TACCTTGATTGGTATTGGTTCACCAACATTATCATAATATGACTGAGTTTTACGTTGAAT 949 consensus_9184#1 ------------------------------------------------------------ consensus_9184#0 ATTATCTCCTACATTGCCTACTTTAATATCTCCTGGATTAGAAGGATCGGTCACTGGTTC 1009 consensus_9184#1 ------------------------------------------------------------ consensus_9184#0 ATTTCCAGAAAGATTATACTGTCGACGATTATTAAGAGATTCAGATGAATAAGACGGGAC 1069 consensus_9184#1 ------------------------------------------------------------ consensus_9184#0 AGATTGTAAATTTTGTATAGTATTACTTTGAGTTTTAGACTTTCGCGGATCTTCCCATGT 1129 consensus_9184#1 ------------------------------------------------------------ consensus_9184#0 AGTTGATTTATTAATGTGATCGATAAAAAAGGGAAACCAGTGATACTATCATATCCCATA 1189 consensus_9184#1 ------------------------------------------------------------ consensus_9184#0 GACCATCCAGGAGGTAAACCCTGTGAGCTCATAATTTGTACACCAGATAGAAGTCAGCTG 1249 consensus_9184#1 ------------------------------------------------------------ consensus_9184#0 GTTAGCTCGAAAGATTAACCGAAAAGCTTTGCAATGCAATCCAGCAACTTAGCGACTCAC 1309 consensus_9184#1 ------------------------------------------------------------ consensus_9184#0 TTCAC 1314 consensus_9184#1 ----- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||