These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9204#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 619 fasta sequence [TATTTGTATTAATTTGAGCAAACCTGTCTTAAAAGTGAAGATAGTAAAAAGGAACAACAGAAGAGCACTAAATTAAACAAATATCAGTGGATACAACAAGAACACATGAAAATAAAAGAGACTAATTAACATATATTCCAACTGCATATAGATACAAATGGAAATATGAAAATCCATAGAATAAATATACATATATGTATTAGANAGCAATCCGAACAAATTATTAAAAATATACTACTAACCAGTAAACATATTACAATTACATCAAATATGGTAATATAATAAACTAACACACAAATATAAACAAATAATGGGAAAAAACGAATAGGACAAAATATCATAAATATTATAACTGAGAGARGCCATTTTCATAACCCATGTCTGTAAGCCATATATAAATATATAGCTTTTAGGGGGTAACGTGTGGGGAATAGGTTTAAACGTAGCAGTCATTAGAATGTGACTAGTATATCTGAAGNAAAGAAACTATGAATATTCCGAANAAAAACAGATAGAACACACAGAAAATGAGTAATATAACTAAAATTTAATATAGAATAAAGCTGTTGATTGAGTGCATATTTTTGTGTTTATTTTTTCTTATGTAATAAACCACCTA] [+] EMBL AA999443 [TATTTGTATTAATTTGAGCAAACCTGTCTTAAAAGTGAAGATAGTAAAAAGGAACAACAGAAGAGCACTAAATTAAACAAATATCAGTGGATACAACAAGAACACATGAAAATAAAAGAGACTAATTAACATATATTCCAACTGCATATAGATACAAAT ] [+] EMBL AA999385 [ TAATTTGAGCAAA CTGTCTTAAAAGTGAAGACAGTAAAACNNGACAACAGAAGAGCACTAAATTAAACAAATATCAGTGGATACAACAAGAACACATGAAAATAAAAGAGACTAATTAACATATATTCCAACTGCATATAGATACAAATGGAAATATGANAATCCATAGAATAAAT ATATATGTATTAGANAGCAATCCGAACAAATTATTAAAAATATACTACTAACCAGTAAACATATTACAATTACATCAAATATGGTAATATAATAAACTAACACACAAATATAAACAAA ] [+] EMBL CD164387 [ CAAATATCAGTGGATACAACAAGAACACATGAAAATAAAAGAGACTAATTAACATATATTCCAACTGCATATAGATACAAATGGAAATATGAAAATCCATAGAATAAATATACATA ] [+] EMBL AA999654 [ TAATTAACATATATTCCAACTGCATATAGATACAAATGGAAATATGAAAATCCATAGAATAAATATATATATATGTATTAGAAAGCAATCCGAACAAATTATTAAAAATATACTACTAACCAGTAAACATATTACAATTACATCAAATATGGTAATATAATAAACTAACACACAAATATAAACAAATAATGGGAAAAAACGAATAGGACAAAATATCATAAATATTATAACTGAGAGARGCCATTTTCATAACCCATGTCTGTAAGCCATATATAAATATATAGCTTTTAGGGGGTAACGTGTGGGGAATAGGTTTAAA ] [+] EMBL CD090878 [ CTGTAAGCCATATATAAATATATAGCTTTTA GGGGTAACGTGTGGGGAGTAGGTTTAAACGTAGCAGTCATTAGAATGTGACTAGTATATCTGAAGNAAAGAAACTATGAATATTCCGAANAAAAACAGATAG ] [-] EMBL SMAA8307 [ TAGGTTTAAATGTAGCAGTCATTAGAATGTGACTAGTATATCTGAAG AAGGAAACTATGAATATTCCGAAAAAAAACAGATAGAACACACAGAAAATGAGTAATATAACTAAAATTTAATATAGAATAAAGCTGTTGATTGAGTGCATATTTTTGTGTTTATTTTTTCTTATGTAATAAACCACCTA] consensusID : consensus_9204#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 271 fasta sequence [TTGTATAANNNGNGCAAACTGTCTTAAAAGTGAAGATAGTAAAGCCCNACAACAGAAGAGCACTAAATTAAACAAATATCAGTGGATACAACAAGAACACATGAAAATAAAAGAGACTAATTAACATATATTCCAACTGCATATAGATACACATGGAAATATGACANTCCATAGAATAAATATATATGATAAATACTANAGAGCAATCCGGAACAAATTATTAAAAATATACTACTAACCAGTAAACATATTACAATTACATCAAATATGG] [+] EMBL AA999270 [TTGTATAANNNGNGCAAACTGTCTTAAAAGTGAAGATAGTAAAGCCCNACAACAGAAGAGCACTAAATTAAACAAATATCAGTGGATACAACAAGAACACATGAAAATAAAAGAGACTAATTAACATATATTCCAACTGCATATAGATACACATGGAAATATGACANTCCATAGAATAAATATATATGATAAATACTANAGAGCAATCCGGAACAAATTATTAAAAATATACTACTAACCAGTAAACATATTACAATTACATCAAATATGG] consensusID : consensus_9204#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 150 fasta sequence [TTGTATAATTTGAGCAAACTGTCTTAAAAGTCAAGATAGTAAACCCCCACAACAGAAGAGCACTAAATTANACACATATCAGTGGATACAACAAGAACACATGACAATNAAAGAGACTAATTCACATATATTCCAACTGCATATAGATAC] [+] EMBL AA999269 [TTGTATAATTTGAGCAAACTGTCTTAAAAGTCAAGATAGTAAACCCCCACAACAGAAGAGCACTAAATTANACACATATCAGTGGATACAACAAGAACACATGACAATNAAAGAGACTAATTCACATATATTCCAACTGCATATAGATAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9204#0 TATTTGTATTAATTTGAGCAAACCTGTCTTAAAAGTGAAGATAGTAAAAAGGAACAACAG 60 consensus_9204#2 ---TTGTAT-AATTTGAGCAAAC-TGTCTTAAAAGTCAAGATAGTAAACCCCCACAACAG 55 consensus_9204#1 ---TTGTAT-AANNNGNGCAAAC-TGTCTTAAAAGTGAAGATAGTAAAGCCCNACAACAG 55 ****** ** * ****** ************ *********** ******* consensus_9204#0 AAGAGCACTAAATTAAACAAATATCAGTGGATACAACAAGAACACATGAAAATAAAAGAG 120 consensus_9204#2 AAGAGCACTAAATTANACACATATCAGTGGATACAACAAGAACACATGACAATNAAAGAG 115 consensus_9204#1 AAGAGCACTAAATTAAACAAATATCAGTGGATACAACAAGAACACATGAAAATAAAAGAG 115 *************** *** ***************************** *** ****** consensus_9204#0 ACTAATTAACATATATTCCAACTGCATATAGATACAAATGGAAATATGAAAATCCATAGA 180 consensus_9204#2 ACTAATTCACATATATTCCAACTGCATATAGATAC------------------------- 150 consensus_9204#1 ACTAATTAACATATATTCCAACTGCATATAGATACACATGGAAATATGACANTCCATAGA 175 ******* *************************** consensus_9204#0 ATAAATATACAT-ATATGTATTAGANAGCAATCCG-AACAAATTATTAAAAATATACTAC 238 consensus_9204#2 ------------------------------------------------------------ consensus_9204#1 ATAAATATATATGATAAATACTANAGAGCAATCCGGAACAAATTATTAAAAATATACTAC 235 consensus_9204#0 TAACCAGTAAACATATTACAATTACATCAAATATGGTAATATAATAAACTAACACACAAA 298 consensus_9204#2 ------------------------------------------------------------ consensus_9204#1 TAACCAGTAAACATATTACAATTACATCAAATATGG------------------------ 271 consensus_9204#0 TATAAACAAATAATGGGAAAAAACGAATAGGACAAAATATCATAAATATTATAACTGAGA 358 consensus_9204#2 ------------------------------------------------------------ consensus_9204#1 ------------------------------------------------------------ consensus_9204#0 GARGCCATTTTCATAACCCATGTCTGTAAGCCATATATAAATATATAGCTTTTAGGGGGT 418 consensus_9204#2 ------------------------------------------------------------ consensus_9204#1 ------------------------------------------------------------ consensus_9204#0 AACGTGTGGGGAATAGGTTTAAACGTAGCAGTCATTAGAATGTGACTAGTATATCTGAAG 478 consensus_9204#2 ------------------------------------------------------------ consensus_9204#1 ------------------------------------------------------------ consensus_9204#0 NAAAGAAACTATGAATATTCCGAANAAAAACAGATAGAACACACAGAAAATGAGTAATAT 538 consensus_9204#2 ------------------------------------------------------------ consensus_9204#1 ------------------------------------------------------------ consensus_9204#0 AACTAAAATTTAATATAGAATAAAGCTGTTGATTGAGTGCATATTTTTGTGTTTATTTTT 598 consensus_9204#2 ------------------------------------------------------------ consensus_9204#1 ------------------------------------------------------------ consensus_9204#0 TCTTATGTAATAAACCACCTA 619 consensus_9204#2 --------------------- consensus_9204#1 --------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||