cluster # 9208

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Schistosoma mansoni
cluster # 9208 cluster # 9208 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9208#0 length = 728 sequences # 7

consensus_9208#1 length = 333 sequences # 1

consensusID : consensus_9208#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 728
fasta sequence

                              [TTGGATAATGGACGCAGAGGCGCAATTTAAAGATGCTGCTCGAATGATTAACTGATGGAAATTATCAGCATTGATTCGCCGAAGTTCCGAATAGGAGATCTGAAGAAACAATTTATTTCCTGTTTACCCAATGAGCATAAAATATTAAAGGAAAACGAAGCTAATGATCTTATTACGTCTGAGTTTAAAAAGATCGTAACTGATTCTTCATTATTCGAACAGCTTGAGAGTGATTGCAGTTTGGAAAATTTATATTTCGATGGGGAGTACACGACCCTAGAGGAAATCTTAAAAATCATACCGTCGAGGAAAGATGAAAAGCAGCTAAAGACTCTGACTCATTTACTGAAAGAAACTGAAGGTTTGAATTCTAGGACATCAGTCCTCACAGCAACGCAAAGAAATCCTCGACCACTTGTGGACACGTCTTACCGAAATTCTGTTGATGAATCTCCAGAGGCCACAGAAGTCATCCAGGATGCATTTGTGACCGTTCTTGTTTACCGACCATTTTGCCTTCCTAGCATCGATCCCTGTGCGCAGTCTCGGCAACTAGTCATTACTCAGAGGTTGGTGCTGTTATCCAAACAAAATCTCACAGTCCTAAGGGAAGCCATAAAATGTTCACAAGATAAGGTTTGGCTAGGAGACTGTAGTGAGGCCCTTGANCATCCCGAGCTGCGTGTTTCGGCGGATCGAATTTACCCTTCATCATATTTTTTCATTGA]

[+] EMBL CD178560             [TTGGATAATGGACGCAGAGGCGCAATTTAAAGATGCTGCTCGAATGATTAACTGATGGAAATTATCAGCATTGATTCGCCGAAGTTCCGAATAGGAGATCTGAAGAAACAATTTATTTCCTGTTCACCCAATGAGCATAAAATATTAAAGGAAAACGAAGCTAATGATCTTATTACGTCTGAGTTTAAAAAGATCGTAACTGATTCTTCATTATTCGAACAGCTTGAGAGTGATTGCAGTTTGGAAAATTTATA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL CD201531             [TTGGATAATGGACGCAGAGGCGCAATTTAAAGATGCTGCTCGAATGATTAACTGATGGAAATTATCAGCATTGATTCGCCGAAGTTCCGAATAGGAGATCTGAAGAAACAATTTATTTCCTGTTTACCCAATGAGCATAAAATATTAAAGGAAAACGAAGCTAATGATCTTATTACGTCTGAGTTTAAAAAGATCGTAACTGATTCTTCATTATTCGAACAGCTTGAGAGTGATTGCAGTTTGGAAAATTTATATTTCGATGGGGAGTACACGACCCTAGAGGAAATCTTAAAAATCATACCGTCGAGGAAAGATGAAAAGCAGCTAAAGACTCTGACTCATTTACTGAAAGAAACTGAAGGTTTGAATTCTAGGACATCAGTCCTCACAGCAACGCAAAGAAATCCTCGACCACTTGTGGACACGTCTTACCGAAATTCTGTTGATGAATCTCCAGAGGCCACAGAAGTCATCCAGGATGCATTTGTGACCGTTCTTGTTTACCGACCATTTTGCCTTCCTAGCATCGATCCCTGTGCGCAGTCTCGGCAACT                                                                                                                                                                              ]
[+] EMBL CD178598             [TTGGATAATGGACGCGGAGGCGCAATTTAAAGATGCTGCTCGAATGATTAACTGATGGAAATTATCAGCATTGATTCGCCGAAGTTCCGAATAGGAGATCTGAAGAAACAATTTATTTCCTGTTTACCCAATGAGCATAAAATATTAAAGGAAAACGAAGCTAATGATCTTATTACGTCTGAGTTTAAAAAGATCGTAACTGATTCTTCATTATTCGAACAGCTTGAGAGTGATTGCAGTTTGGAAAATTTATATTTCGATGGGGAGTACACGACCCTAGAGGAAATCTTAAAAATCATACCGTCGAGGAAAGATGAAAAGCAGCTAAAGACTCTGACTCATTTACTGAAAGAAACTGAAGGTTTGAATTCTAGGACATCAGTCCTCACAGCAACGCAAAGAAATCCTCGACCACTTGTGGACACGTCTTACCGGAATTCTGTTGATGAATCTCCAGAGGCCACAGAAGTCATCCAGGATGCATTTGTGACCGTTCTTGTTTACC                                                                                                                                                                                                                               ]
[-] EMBL CD190173             [                        ATTTAAAGATGCTGCTCGAATGATTAACTGATGGAAATTATCAGCATTGATTCGCCGAAGTTCCGAATAGGAGATCTGAAGAAACAATTTATTTCCTGTTTACCCAATGAGCATAAAATATTAAAGGAAAACGAAGCTAATGATCTTATTACGTCTGAGTTTAAAAAGATCGTAACTGATTCTTCATTATTCGAACGGCTTGAGAGTGATTGCAGTTTGGAAAATTTATATTTCGATGGGGAGTACACGACCCTAGAGGAAATCTTAAAAATCATACCGTCGAGGAAAGATGAAAAGCAGCTAAAGACTCTGACTCATTTACTGAAAGAAACTGAAG                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CD079448             [                           TAAAGATGCTGCTCGAATGATTAACTGATGGAAATTATCAGCATTGATTCGCCGAAGTTCCGAATAGGAGATCTGAAGAAACAATTTATTTCCTGTTTACCCAATGAGCATAAAATATTAAAGGAAAACGAAGCTAATGATCTTATTACGTCTGAGTTTAAAAAGATCGTAACTGATTCTTCATTATTCGAACAGCTTGAGAGTGATTGCAGTTTGGAAAATTTATATTTCGATGGGGAGTACACGACCCTAGAGGAAATCTTAAAAATCATACCGTCGAGGAAAGATGAAAAGCAGCTAAAGACTCTGACTCATTTACTGAAAGAAACTGAAGGTTTGAATTCTAGGACATCAGTCCTCACAGCAACGCAAAGAAATCCTCGACCACTTGTGGACACGTCTTACCGAAATTCTGTTGATGAATCTCCAGAGGCCACAGAAGTCATCCAGGATGCATTTGTGACCGTTCTTGTTTACCGACCATTTTGCCTTCCTAGCATCGATCCCTGTGCGCAGTCTCGGCAACTAGTCATTACTCAGAGGTTGGTGCTGTTATCCAAACAAAATCTCACAGTCCTAAGGGAAGCCATAAAATGTTCACAAGATAAGGTTTGGCTAGGAGACTGTAGTGAGGCCCTTGANCATCCCGAGCTGCGTGTTTCGGCGGATCGAATTTACCCTTCATCATATTTTTTCATTGA]
[+] EMBL CD135916             [                                                                                           TAGGAGATCTGAAGAAACAATTTATTTCCTGTTTACCCAATGAGCATAAAATATTAAAGGAAAACGAAGCTAATGATCTTATTACGTCTGAGTTTAAAAAGATCGTAACTGATTCTTCATTATTCGAACAGCTTGAGAGTGATTGCAGTTTGGAAAATTTATATTTCGATGGGGAGTACACGACCCTAGAGGAAATCTTAAAAATCATACCGTCGAGGAAAGATGAAAAGCAGCTAAAGACTCTGACTAATTTACTGAAAGAAACTGAAGGTTTGAATTCTAGGACATCAGTCCTCACAGCAACGCAAAGAAATCCTCGACCACTTGTGGACACGTCTTACCGAAATTCTGTTGATGAATCTCCAGAGGCCACAGAAGTCATCCAGGATGCATTTGTGACCGTTCTTGTTTACCGA                                                                                                                                                                                                                             ]
[+] EMBL CD155683             [                                                                                                                                                                                                                                                                                    CTAGAGGAAATCTTAAAAATCATACCGTCGAGGAAAGATGAAAAGCAGCTAAAGACTCTGACTCATTTACTGAAAGAAACTGAAGGTTTGAATTCTAGGACATCAGTCCTCACAGCAACGCAAAGAAATCCTCGACCACTTGTGGACACGTCTTACCGAAATTCTGTTGATGAATCTCCAGAGGCCACAGAAGTCATCCAGGATGCATTTGTGACCGTTCTTGTTTACCGA                                                                                                                                                                                                                             ]




>consensus_9208#0
TTGGATAATGGACGCAGAGGCGCAATTTAAAGATGCTGCTCGAATGATTAACTGATGGAA
ATTATCAGCATTGATTCGCCGAAGTTCCGAATAGGAGATCTGAAGAAACAATTTATTTCC
TGTTTACCCAATGAGCATAAAATATTAAAGGAAAACGAAGCTAATGATCTTATTACGTCT
GAGTTTAAAAAGATCGTAACTGATTCTTCATTATTCGAACAGCTTGAGAGTGATTGCAGT
TTGGAAAATTTATATTTCGATGGGGAGTACACGACCCTAGAGGAAATCTTAAAAATCATA
CCGTCGAGGAAAGATGAAAAGCAGCTAAAGACTCTGACTCATTTACTGAAAGAAACTGAA
GGTTTGAATTCTAGGACATCAGTCCTCACAGCAACGCAAAGAAATCCTCGACCACTTGTG
GACACGTCTTACCGAAATTCTGTTGATGAATCTCCAGAGGCCACAGAAGTCATCCAGGAT
GCATTTGTGACCGTTCTTGTTTACCGACCATTTTGCCTTCCTAGCATCGATCCCTGTGCG
CAGTCTCGGCAACTAGTCATTACTCAGAGGTTGGTGCTGTTATCCAAACAAAATCTCACA
GTCCTAAGGGAAGCCATAAAATGTTCACAAGATAAGGTTTGGCTAGGAGACTGTAGTGAG
GCCCTTGANCATCCCGAGCTGCGTGTTTCGGCGGATCGAATTTACCCTTCATCATATTTT
TTCATTGA

consensusID : consensus_9208#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 333
fasta sequence

                              [ATTATGGGTCATTTTTAGCGACTTTTTAAGTCTCGGCAACTAGTCATCACTCAGAGGTTGGTGCTGTTATCCAAACAAAATCTCACAGTCCTAAGGGAAGCCATAAAATGTTCACAAGATAAGGTAAGTGTTCACCCTGTGTAAGCAGTTTTCAGGTTTGGCTAGGAGACTGTAGTGAGGCCCTTGACAATCCCGAGCTGCGTGTTTCGGCGGATCGAATTTACCCTTCATCATATTTTTTCATTGAAGGCACTTTTTATGATGATCTACGAAACCCAAGTAGCAAGAGCCTTGGGGAGTAAGTTACTTTGTTTACTTACTTTATACCCTAGA]

[-] EMBL CD187113             [ATTATGGGTCATTTTTAGCGACTTTTTAAGTCTCGGCAACTAGTCATCACTCAGAGGTTGGTGCTGTTATCCAAACAAAATCTCACAGTCCTAAGGGAAGCCATAAAATGTTCACAAGATAAGGTAAGTGTTCACCCTGTGTAAGCAGTTTTCAGGTTTGGCTAGGAGACTGTAGTGAGGCCCTTGACAATCCCGAGCTGCGTGTTTCGGCGGATCGAATTTACCCTTCATCATATTTTTTCATTGAAGGCACTTTTTATGATGATCTACGAAACCCAAGTAGCAAGAGCCTTGGGGAGTAAGTTACTTTGTTTACTTACTTTATACCCTAGA]




>consensus_9208#1
ATTATGGGTCATTTTTAGCGACTTTTTAAGTCTCGGCAACTAGTCATCACTCAGAGGTTG
GTGCTGTTATCCAAACAAAATCTCACAGTCCTAAGGGAAGCCATAAAATGTTCACAAGAT
AAGGTAAGTGTTCACCCTGTGTAAGCAGTTTTCAGGTTTGGCTAGGAGACTGTAGTGAGG
CCCTTGACAATCCCGAGCTGCGTGTTTCGGCGGATCGAATTTACCCTTCATCATATTTTT
TCATTGAAGGCACTTTTTATGATGATCTACGAAACCCAAGTAGCAAGAGCCTTGGGGAGT
AAGTTACTTTGTTTACTTACTTTATACCCTAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9208#0      TTGGATAATGGACGCAGAGGCGCAATTTAAAGATGCTGCTCGAATGATTAACTGATGGAA 60
consensus_9208#1      ------------------------------------------------------------
                                                                                  

consensus_9208#0      ATTATCAGCATTGATTCGCCGAAGTTCCGAATAGGAGATCTGAAGAAACAATTTATTTCC 120
consensus_9208#1      ------------------------------------------------------------
                                                                                  

consensus_9208#0      TGTTTACCCAATGAGCATAAAATATTAAAGGAAAACGAAGCTAATGATCTTATTACGTCT 180
consensus_9208#1      ------------------------------------------------------------
                                                                                  

consensus_9208#0      GAGTTTAAAAAGATCGTAACTGATTCTTCATTATTCGAACAGCTTGAGAGTGATTGCAGT 240
consensus_9208#1      ------------------------------------------------------------
                                                                                  

consensus_9208#0      TTGGAAAATTTATATTTCGATGGGGAGTACACGACCCTAGAGGAAATCTTAAAAATCATA 300
consensus_9208#1      ------------------------------------------------------------
                                                                                  

consensus_9208#0      CCGTCGAGGAAAGATGAAAAGCAGCTAAAGACTCTGACTCATTTACTGAAAGAAACTGAA 360
consensus_9208#1      ------------------------------------------------------------
                                                                                  

consensus_9208#0      GGTTTGAATTCTAGGACATCAGTCCTCACAGCAACGCAAAGAAATCCTCGACCACTTGTG 420
consensus_9208#1      ------------------------------------------------------------
                                                                                  

consensus_9208#0      GACACGTCTTACCGAAATTCTGTTGATGAATCTCCAGAGGCCACAGAAGTCATCCAGGAT 480
consensus_9208#1      ------------------------------------------------------------
                                                                                  

consensus_9208#0      GCATTTGTGACCGTTCTTGTTTACCGACCATTTTGCCTTCCTAGCATCGATCCCTGTGCG 540
consensus_9208#1      -----------------------------ATTATGGGTCATTTTTAGCGACTTTTT---- 27
                                                   *** **  *   *   * ***    *     

consensus_9208#0      CAGTCTCGGCAACTAGTCATTACTCAGAGGTTGGTGCTGTTATCCAAACAAAATCTCACA 600
consensus_9208#1      AAGTCTCGGCAACTAGTCATCACTCAGAGGTTGGTGCTGTTATCCAAACAAAATCTCACA 87
                       ******************* ***************************************

consensus_9208#0      GTCCTAAGGGAAGCCATAAAATGTTCACAAGATAAGGT---------------------- 638
consensus_9208#1      GTCCTAAGGGAAGCCATAAAATGTTCACAAGATAAGGTAAGTGTTCACCCTGTGTAAGCA 147
                      **************************************                      

consensus_9208#0      ----------TTGGCTAGGAGACTGTAGTGAGGCCCTTGANCATCCCGAGCTGCGTGTTT 688
consensus_9208#1      GTTTTCAGGTTTGGCTAGGAGACTGTAGTGAGGCCCTTGACAATCCCGAGCTGCGTGTTT 207
                                ******************************  ******************

consensus_9208#0      CGGCGGATCGAATTTACCCTTCATCATATTTTTTCATTGA-------------------- 728
consensus_9208#1      CGGCGGATCGAATTTACCCTTCATCATATTTTTTCATTGAAGGCACTTTTTATGATGATC 267
                      ****************************************                    

consensus_9208#0      ------------------------------------------------------------
consensus_9208#1      TACGAAACCCAAGTAGCAAGAGCCTTGGGGAGTAAGTTACTTTGTTTACTTACTTTATAC 327
                                                                                  

consensus_9208#0      ------
consensus_9208#1      CCTAGA 333