These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9210#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1428 fasta sequence [ACTGGTAGATCATGTTCACCTTATGCTTATCATGATTTATGTTTACCATGTGATTCATATATATCACAACTATGTAATGATTTATATCGTATTACTGGTATACCAATAACAAGTCAATTATGGTCTATTCAATCAAAACATAATCGTAATCGTAATAATAAAAGTCTATCAGTCAATGAACAAATACCATCGAATGAAGTGTTAAACTCATTAGTTAATGAATTGAATCAACATTATCCACAACAGTCATTTAAAACTCAATCCCTTTTGTCAAAACATTCAAATGTTGCTTCTACTACTATCAACACTAATGATGATGATGTTGCTAAACAAAAATCTAGTCATAACAACTTAACATTAGCTGATTGTGGTTTGAAATCAGGTGATGTTTGTAATTTATGTTTAACTGCTTCAAATCCATTAAATCATCATAAAAATCCAAGTAAAGCTCAACTATCTCACAATGATGTTGATACCCATTCCAAATCATTACAACAACGAGCAAAGAAATCATCATCAAATCCTCTTGATGATAATATTCCTAGTAGTTCTTCCACTGCCACTACTACCA-----GCTGCTGCTGCTGTTGACGTCTTCATCACTGAAAGTTCCTCAACTAGGAATAAGTCTAGTCGTAAAATATCAAATTCAAAAAAACCTAATTATCGTAATGTGTCTCCAGAAATTGGATTCGATGACGATTATGATAACTATAACGACGATAACGAAGAGGAGGAGGAGGATGAAGATTATGACATGGATTATCATTATTCCAGTGATGAAATACTTGATGAAACTGATGATAAAAAAATCACTCCATGGAATCAACCATTAATTCCTGATGATCCAAGTCTGGAAGATCCGGAATTAGCCACACAACAATTTTGTATAGGATTTTTACAACGTTATTGTAGGGATGGTGTAACTATGTCACCACCATTTTCTACATGTAGTTTTGAAACTGCTCTATCTTTGTCAGTTGGTACTAGTCAAGTGTGTGATCGTAAACCATTATTCATCTATTTACATAATGATTCAAGTATAGCATGTCTTGTATTCTGTCAACAAATTNTATGTTCATCTGGTTTAATAAGATNTTTAACTGATCATGATTNTAGTTTATGGCCATGGGATATAACATTAACACGTATTANAGAACGTTTAATTGGTTGGTTTTGAAGTG-AATTACCCAAATTATCAAGAAATATTACATCA-TTAAGTGTAGATAGTTATCCTATTCTAGCAATGATTGTCAAATTATCAGGTCAATTA-GAAGTGTTATGTATTGTAAT-GGGTACT-GGGATTGTAAAAATGTGGCCACCAACTGATCATTTTCCACCTTTACTAAATGTACGTCGTAGTAGTAGTAGCAGTCATTTTACAACATCTTTACAATCAATGAAAATGGATGATATTCCTCGTCAGCAGGA] [+] EMBL CD183566 [ACTGGTAGATCATGTTCACCTTATGCTTATCATGATTTATGTTTACCATGTGATTCATATATATCACAACTATGTAATGATTTATATCGTATTACTGGTATACCAATAACAAGTCAATTATGGTCTATTCAATCAAAACATAATCGTAATCGTAATAATAAAAGTCTATCAGTCAATGAACAAATACCATCGAATGAAGTGTTAAACTCATTAGTTAATGAATTGAATCAACATTATCCACAACAGTCATTTAAAACTCAATCCCTTTTGTCAAAACATTCAAATGTTGCTTCTACTACTATCAACACTAATGATGATGATGTTGCTAAACAAAAATCTAGTCATAACAACTTAACATTAGCTGATTGTGGTTTGAAATCAGGTGATGTTTGTAATTTATGTTTAACTGCTTCAAATCCATTAAATCATCATAAAAATCCAAGTAAAGCTCAACTATCTCACAATGATGTTGATACCCATTCCAAATCATTACAACAACGAGCAAAGAAATCATCATCAAATCCTCTTGATGATAATATTCCTAGTAGTTCTTCCACTGCCACTACTACCA CTGCTGCTGCTGTTGACGTCTTCATCACTGAA ] [-] EMBL CD189956 [ TGCTTCAAATCCATTAAATCATCATAAAAATCCAAGTANAGCTCAACTATCTCACAGTGATGTTGATGCCCATTCCAAATCATTACAACAACGAGCAAAGAAATCATCATCAAATCCTCTTGATGATAATATTCCTAGTAGTTCTTCCACTGCCACTACTACCACTGCTGCTGCTGCTGCTGTTGACGTCTTCATCACTGAAACTTCCTCAACTAGGAATAAGTCTAGTCGTAAAATATCAAATTCAAAAAAACCTAATTATCGTAATGTGTCTCCAGAAATTGGATTCGATGACGATTATGATAACTATAACGACGATAACGAAGAGGAGGAGGAGGATGAAGATTATGACATGGATTATCATTATTCCAGTGATGAAATACTTGATGAAACTGATGATAAAAAAATCACTCCATGGAATCAACCATTTATTCCTGATGATCCAAGTTTGGAAGATCCGGAATTAGCCACACtg ] [+] EMBL CD132481 [ aCTGCTGCTGCTGTTGACGTCTTCATCACTGAAAGTTCCTCAACTAGGAATAAGTCTAGCCGTAAAATATCAAATTCAAAAAAACCTAt ] [+] EMBL CD187860 [ TGCTGTTGACGTCTTCATCACTGAAAGTTCCTCAACTAGGAATAAGTCTAGTCGTAAAATATCAAATTCAAAAAAACCTAATTATCGTAATGTGTCTCCAGAAATTGGATTCGATGACGATTATGATAACTATAACGACGATAACGAAGAGGAGGAGGAGGATGAAGATTATGACATGGATTATCATTATTCCAGTGATGAAATACTTGATGAAACTGATGAT AAAAAATCACTCCATGGAATCAACCATTAATTCCTGATGATCCAAGTCTGGAAGATCCGGAATTAGCCACACAACAATTTTGTATAGGATTTTTACAACGTTATTGTAGGGATGGTGTAACTATGTCACCACCATTTTCTACATGTAGTTTTGAAACTGCTCTATCTTTGTCAGTTGGTACTAGTCAAGTGTGTGATCGTAAACCATTATTCATCTATTTACATAATGATTCAAGTATAGCATGTCTTGTATTCTGTCAACAAATTNTATGTTCATCTGGTTTAATAAGATNTTTAACTGATCATGATTNTAGTTTATGGCCATGGGATATAACATTAACACGTATTANAGAACGTTTAATTGGTTGGTTTTGAAGTG AATTACCCAAATTATCAAGAAATATTACATCATTTAAGTGTAGATAG TATCCTATTCTAGCAATGATTGTC AATTATCAGGTCAATTANAAAGTG TATGTATTG AATGGGGTACTGGGGATTGTAAAAATGTGGCCACCAACTGATCA TTTNCACCCTTACT AATGTA ] [+] EMBL CD187831 [ CCTAATTATCGTAATGTGTCTCCAGAAATTGGATTCGATGACGATTATGATAACTATAACGACGATAACGAAGAGGAGGAGGAGGATGAAGATTATGACATGGATTATCATTATTCCAGTGATGAAATACTTGATGAAACTGATGATAAAAAAATCACTCCATGGAATCAACCATTAATTCCTGATGATCCAAGTCTGGAAGATCCGGAATTAGCCACACAACAATTTTGTATAGGATTTTTACAACGTTATTGTAGGGATGGTGTAACTATGTCACCACCATTTTCTACATGTAGTTTTGAAACTGCTCTATCTTTGTCAGTTGGTACTAGTCAAGTGTGTGATCGTAAACCATTATTCATCTATTTACATAATGATTCAAGTATAGCATGTCATGTATTCTGTCAACAAATTTTATGTTCATCTGGTTTAATAAGATTTTTAACTGATCATGATTTTAGTTTATGGCCATGGGATATAACATTAACACGTATTAAAGAACGTTTAATTGGTTGG TTTGAAGTGAAATTACCAAATTTATCAAGAATAATTACATCA TTAAGTGTAGATAGTTATCCTATTCTAGCAATGATTGTCAAATTATCAGGTCAATTA GAAGTGTTATGTATTGTAAT GGGTACT GGGATTGTAAAAATGTGGCCACCAACTGATCATTTTCCACCTTTACTAAATGTACGTCGTAGTAGTAGTAGCAGTCATTTTACAACATCTTTACAATCAATGAAAATGGATGATATTCCTCGTCAGCAGGA] [+] EMBL CD164829 [ TACATCA TTAAGTGTAGATAGTTATCCTATTCTAGCAATGATTGTCAAATTATCAGGTCAATTA GAAGTGTTATGTATTGTAAT GGGTACT GGGATTGTAAAAATGTGGCCACCAACTGATCATTTTCCACCTTTACTAAATGTACGTCGTAGTAGTAGTAGCAGTCATTTTACAACATCTTTACAATCAATGAAAAATGATGATAa ] consensusID : consensus_9210#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 385 fasta sequence [GTTGCAGAATTATGGCAAGCTTATACAACATATTTGGAATTGTTAGGACCGGAAATACTTGATGAAACTGATGATAAAAAAATCACTCCATGGAATCAACCATTAATTCCTGATGATCCAAGTCTGGAAGATCCGGAATTAGCCACACAACAATTTTGTATAGGATTTTTACAACGTTATTGTAGGGATGGTGTAACTATGTCACCACCATTTTCTACATGTAGTTTTGAAACTGCTCTATCTTTGTCAGTTGGTACTAGTCAAGTGTGTGATCGTAAACCATTATTCATCTATTTACATAATGATTCAAGTATAGCATGTCATGTATTCTGTCAACAAATTTTATGTTCATCTGGTTTAATAAGATTTTTAANCTGATCATGAT] [-] EMBL CD159575 [GTTGCAGAATTATGGCAAGCTTATACAACATATTTGGAATTGTTAGGACCGGAAATACTTGATGAAACTGATGATAAAAAAATCACTCCATGGAATCAACCATTAATTCCTGATGATCCAAGTCTGGAAGATCCGGAATTAGCCACACAACAATTTTGTATAGGATTTTTACAACGTTATTGTAGGGATGGTGTAACTATGTCACCACCATTTTCTACATGTAGTTTTGAAACTGCTCTATCTTTGTCAGTTGGTACTAGTCAAGTGTGTGATCGTAAACCATTATTCATCTATTTACATAATGATTCAAGTATAGCATGTCATGTATTCTGTCAACAAATTTTATGTTCATCTGGTTTAATAAGATTTTTAANCTGATCATGAT] consensusID : consensus_9210#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 377 fasta sequence [CAGATGTAATTGTTGCAGAATTATGGCAAGCTTATACAACATATTTGGAATTGTTAGAACCGGAATGTGCAACTGAACGTGAAATTATTGCTCGACGACGTGTACTTTAAGAACAAGAAGCAGCCTATGAAGAATCATTACGACGTGATCAAGAGAAGGAATGGGAACGTGCTAAAGCCAAAGCGGAAGAAGATAAACGTAAACAACTTGAAGAAGAGAAACGTATAAATGATGAAATAAAAGCTACACAGCATCGATTACTCATGGCTGCTAGTTTACCACCGGAACCGCCTACACCAAAGACACCAGCAGCTGAAGCATTTTTATCTACACCAAATGGTGTCGATGGTATTACAACGTTACGTTTTCGTTTACCT] [+] EMBL CD114384 [CAGATGTAATTGTTGCAGAATTATGGCAAGCTTATACAACATATTTGGAATTGTTAGAACCGGAATGTGCAACTGAACGTGAAATTATTGCTCGACGACGTGTACTTTAAGAACAAGAAGCAGCCTATGAAGAATCATTACGACGTGATCAAGAGAAGGAATGGGAACGTGCTAAAGCCAAAGCGGAAGAAGATAAACGTAAACAACTTGAAGAAGAGAAACGTATAAATGATGAAATAAAAGCTACACAGCATCGATTACTCATGGCTGCTAGTTTACCACCGGAACCGCCTACACCAAAGACACCAGCAGCTGAAGCATTTTTATCTACACCAAATGGTGTCGATGGTATTACAACGTTACGTTTTCGTTTACCT] [+] EMBL CD127874 [ TATGGCAAGCTTATACAACATATTTGGAATTGTAAGAACCGGAATGTGCAACTGAACGTGAAATTATTGCTCGACGACGTGCACTATAAGAACAAGAAGCAGCCTATGAAGAATCATTACGACGTGATCAAGAGAATGAATGGGAACGTGCTATAGCCAAAGCGGAAGAAGATAAACGTGGACAACTTGAAGAAGAGAAACGTATAAATGATGAAATAAAAGCTACACAGCATCGATTACTCATGGCTGCTAGTTTACCACCGG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9210#0 ACTGGTAGATCATGTTCACCTTATGCTTATCATGATTTATGTTTACCATGTGATTCATAT 60 consensus_9210#1 ------------------------------------------------------------ consensus_9210#2 ------------------------------------------------------------ consensus_9210#0 ATATCACAACTATGTAATGATTTATATCGTATTACTGGTATACCAATAACAAGTCAATTA 120 consensus_9210#1 ------------------------------------------------------------ consensus_9210#2 ------------------------------------------------------------ consensus_9210#0 TGGTCTATTCAATCAAAACATAATCGTAATCGTAATAATAAAAGTCTATCAGTCAATGAA 180 consensus_9210#1 ------------------------------------------------------------ consensus_9210#2 ------------------------------------------------------------ consensus_9210#0 CAAATACCATCGAATGAAGTGTTAAACTCATTAGTTAATGAATTGAATCAACATTATCCA 240 consensus_9210#1 ------------------------------------------------------------ consensus_9210#2 ------------------------------------------------------------ consensus_9210#0 CAACAGTCATTTAAAACTCAATCCCTTTTGTCAAAACATTCAAATGTTGCTTCTACTACT 300 consensus_9210#1 ------------------------------------------------------------ consensus_9210#2 ------------------------------------------------------------ consensus_9210#0 ATCAACACTAATGATGATGATGTTGCTAAACAAAAATCTAGTCATAACAACTTAACATTA 360 consensus_9210#1 ------------------------------------------------------------ consensus_9210#2 ------------------------------------------------------------ consensus_9210#0 GCTGATTGTGGTTTGAAATCAGGTGATGTTTGTAATTTATGTTTAACTGCTTCAAATCCA 420 consensus_9210#1 ------------------------------------------------------------ consensus_9210#2 ------------------------------------------------------------ consensus_9210#0 TTAAATCATCATAAAAATCCAAGTAAAGCTCAACTATCTCACAATGATGTTGATACCCAT 480 consensus_9210#1 ------------------------------------------------------------ consensus_9210#2 ------------------------------------------------------------ consensus_9210#0 TCCAAATCATTACAACAACGAGCAAAGAAATCATCATCAAATCCTCTTGATGATAATATT 540 consensus_9210#1 ------------------------------------------------------------ consensus_9210#2 ------------------------------------------------------------ consensus_9210#0 CCTAGTAGTTCTTCCACTGCCACTACTACCAGCTGCTGCTGCTGTTGACGTCTTCATCAC 600 consensus_9210#1 ------------------------------------------------------------ consensus_9210#2 ------------------------------------------------------------ consensus_9210#0 TGAAAGTTCCTCAACTAGGAATAAGTCTAGTCGTAAAATATCAAATTCAAAAAAACCTAA 660 consensus_9210#1 ------------------------------------------------------------ consensus_9210#2 ------------------------------------------------------------ consensus_9210#0 TTATCGTAATGTGTCTCCAGAAATTGGATTCGATGACGATTATGATAACTATAACGACGA 720 consensus_9210#1 ------------------------------------------------------------ consensus_9210#2 ----------------------------------------------------------CA 2 consensus_9210#0 TAACGAAGAGGAGGAGGAGGATG--AAGATTATGACATGGATTATCATTATTCCAGTGAT 778 consensus_9210#1 ---------GTTGCAGAATTATGGCAAGCTTATACAACATATTTGGAATTGTTAGGACCG 51 consensus_9210#2 GATGTAATTGTTGCAGAATTATGGCAAGCTTATACAACATATTTGGAATTGTTAGAACCG 62 * * ** * *** *** **** * *** * * * consensus_9210#0 GAAATACTTGATGAAACTGATGATAAAAAAATCACTCCATGGAATCAACCATTAATTCCT 838 consensus_9210#1 GAAATACTTGATGAAACTGATGATAAAAAAATCACTCCATGGAATCAACCATTAATTCCT 111 consensus_9210#2 GAAT------GTGCAACTGAACGTGAAATTATTGCTCGACGACGTGTACTTTAAGAAC-- 114 *** ** ****** * *** ** *** * * * ** * * * consensus_9210#0 GATGATCCAAGTCTGGAAGATCCGGAATTAGCCACACAACAATTTTGTATAGGATTTTTA 898 consensus_9210#1 GATGATCCAAGTCTGGAAGATCCGGAATTAGCCACACAACAATTTTGTATAGGATTTTTA 171 consensus_9210#2 -AAGAAGCAGCCTATGAAGAATCATTACGACGTGATCAAGAGAAG-GAATGGGAACGTGC 172 * ** ** ***** * * * *** * * ** *** * consensus_9210#0 CAACGTTATTGTAGGGATGGTGTAACTATGTCACCACCATTTTCTACATGTAGTTTTGAA 958 consensus_9210#1 CAACGTTATTGTAGGGATGGTGTAACTATGTCACCACCATTTTCTACATGTAGTTTTGAA 231 consensus_9210#2 TAAAGCCAAAGC-GGAAGAAGATAA--ACGTAAACAAC-TTGAAGAAGAGAAACGTATAA 228 ** * * * ** * *** * ** * ** * ** * * * * ** consensus_9210#0 ACTGCTCTATCTTTGTCAGTTGGTACTAGTCAAGTGTG--TGATCGTAAACCATTATTCA 1016 consensus_9210#1 ACTGCTCTATCTTTGTCAGTTGGTACTAGTCAAGTGTG--TGATCGTAAACCATTATTCA 289 consensus_9210#2 ATGATGAAATAAAAGCTACACAGCATCGATTACTCATGGCTGCTAGTTTACCACCG--GA 286 * ** * * * * * * ** ** * ** **** * consensus_9210#0 TCTATTTACAT-AATGATTCAAGTATAGCATGTCTTGTATTCTGTCAACAAATTNTATGT 1075 consensus_9210#1 TCTATTTACAT-AATGATTCAAGTATAGCATGTCATGTATTCTGTCAACAAATTTTATGT 348 consensus_9210#2 ACCGCCTACACCAAAGACACCAGCAGCTGAAGCATTTTTATCTA-CACCAAATG--GTGT 343 * **** ** ** * ** * * * * * *** ** ***** *** consensus_9210#0 TCATCTGGTTTAATAAGATNTTTAAC-TGATCATGATTNTAGTTTATGGCCATGGGATAT 1134 consensus_9210#1 TCATCTGGTTTAATAAGATTTTTAANCTGATCATGAT----------------------- 385 consensus_9210#2 CGAT--GGTATTACAACGTTACGTTTTCGTTTACCT------------------------ 377 ** *** * * ** * * * * consensus_9210#0 AACATTAACACGTATTANAGAACGTTTAATTGGTTGGTTTTGAAGTGAATTACCCAAATT 1194 consensus_9210#1 ------------------------------------------------------------ consensus_9210#2 ------------------------------------------------------------ consensus_9210#0 ATCAAGAAATATTACATCATTAAGTGTAGATAGTTATCCTATTCTAGCAATGATTGTCAA 1254 consensus_9210#1 ------------------------------------------------------------ consensus_9210#2 ------------------------------------------------------------ consensus_9210#0 ATTATCAGGTCAATTAGAAGTGTTATGTATTGTAATGGGTACTGGGATTGTAAAAATGTG 1314 consensus_9210#1 ------------------------------------------------------------ consensus_9210#2 ------------------------------------------------------------ consensus_9210#0 GCCACCAACTGATCATTTTCCACCTTTACTAAATGTACGTCGTAGTAGTAGTAGCAGTCA 1374 consensus_9210#1 ------------------------------------------------------------ consensus_9210#2 ------------------------------------------------------------ consensus_9210#0 TTTTACAACATCTTTACAATCAATGAAAATGGATGATATTCCTCGTCAGCAGGA 1428 consensus_9210#1 ------------------------------------------------------ consensus_9210#2 ------------------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||