These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9213#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1125 fasta sequence [AGCCATATTCGGCCGACGCGCTTGGTGCTTTGGGTGCAGTTGCTTATGGTGTAGAAGTCAAATTGGCCGACGTATTAGATTTAGGTCTTGTTGTCAAAAGAGATAATCGAGGAGAGATATGTGTGAAAGGTAAGCGATGCACCAAAGGCTATTACAAAGATCCTCAAAATACAGCACTGCTAATTGACTCAGACGGTTGGTTACATACTGGAGATATAGGAGAATGGACCTCAGAAGGTTCATTGATGTTAGTTGATCGAGTTAAAAGTATTTTCAAGTTGGCTCAAGGTGAATATGTAGCGCCAGAAAGACTGGAAGCACTTTATCAAAGTTGTAGTCTAATTAGTCAAATTTTTATTGATGCCAATCCTAAATCCACTTATCCTGTAGCTATAATAGTGCCAAACTTCGACGAATTACGTGAATCACTTAGCAAGACAGACCCTGGATTGGTTAATTTATCCGATCATGATTTATGTCAACATGAAATTATCCATCGAAAATATTTAAATGTTTTGGATCAAATTGCCAATCAAAGATTTCTGAAAGGATTTGAAAAATTGAAGAAAATCCATCTGACTGATGAAACTTTCACAATAGAAAATGGGTTGCTCACTCCAACACTCAAGATTTCCCGATACAAAGCCAGAAAGGTATATTCCGAAATTATAAACAGATTATGTGACGAAATTATGTCTACGGAAAATCATAAATAGAATGAGAATTCAAAACTGGCATACTTGACACGAACTTTATTATATTCATCATATGTTTCTTGTATAACTTCATAACTTTTTGATATATGATTATTTTCAGAATACCGAGCTATATCATTATTNNTCTTGCATTCTGGTTTTTATGATGGTCTCTGCTCTGTTTGTTCATTTATTTATTNCTCTAATATTCTGGGTCGG-ATTCATATAACTATTAATAACTNNTAGACNGAT-ATGATGATGGCATAAACTAATATTAAATTTTCTGACTTTCTGTAA-TCTCTTACTCAAATAAACA-TA-TTTTCTGATTNTTTTG-AGTA-TTTTTATTCCC-TTTTATTT-CCATGTANGGC-TG-ATGGAAG-AAC-A-TTTTCA-TTTCC-TAC-TTTTATC-ANNT--A-TATTTGG--ACA-TTGTG-CC-ATATCT] [+] EMBL CD081656 [AGCCATATTCGGCCGACGCGCTTGGTGCTTTGGGTGCAGTTGCTTATGGTGTAGAAGTCAAATTGGCCGACGTATTAGATTTAGGTCTTGTTGTCAAAAGAGATAATCGAGGAGAGATATGTGTGAAAGGTAAGCGATGCACCAAAGGCTATTACAAAGATCCTCAAAATACAGCACTGCTAATTGACTCAGACGGTTGGTTACATACTGGAGATATAGGAGAATGGACCTCAGAAGGTTCATTGATGTTGGTTGATCGAGTTAAAAGTATTTTCAAGTTGGCTCAAGGTGAATATGTAGCGCCAGAAAGACTGGAAGCACTTTATCAAAGTTGTAGTCTAATTAGTCAAATTTTTATTGATGCCAATCCTAAATCCACTTATCCTGTAGCTATAATAGTGCCAAACTTCGACGAATTACGTGAATCACTTAGCAAGACAGACCCTGGATTGGTTAATTTATCCGATCATGATTTATGTCAACATGAAATTATCCATCGAAAATATTTAAATGTTTTGGATCAAATTGCCAATCAAAGATTTCTGAAAGGATTTGAAAAATTGAAGAAAATCCATCTGACTGATGAAACTTTCACAATAGAAAATGGGTTGCTCACTCCAACACTCAAGATTTCCCGATACAAAGCCAGAAAGGTATATTCCGAAATTATAAACAGATTATGTGACGAAATTATGTCTACGGAAAATCATAAATAGAATGAGAATTCAAAACTGGCATACTTGACACGAACTTTATTATATTCATCATATGTTTCTTGTATAACTTCATAACTTTTTGATATATGATTATTNTCAGAATACCGAGCTATATCATTATTNNTCTTGCATTCTGGTTTTTATGATGGTCTCTGCTCTGTTTGTTCATTTATTTATTNCTCTAATATTCTGGGTCGG ATTCATATAACTATTAATAACTNNTAGACNGAT ATGATGATGGCATAAACTAATATTAAATTTTCTGACTTTCTGTAA TCTCTTACTCAAATAAACA TA TTTTCTGATTNTTTTG AGTA TTTTTATTCCC TTTTATTT CCATGTANGGC TG ATGGAAG AAC A TTTTCA TTTCC TAC TTTTATC ANNT A TATTTGG ACA TTGTG CC ATATCT] [+] EMBL CD063875 [ TTTAGGTC TGTCGTCACAAGAGATAATCGAGGAGAGAT TGTGTGAAAGGTAAGCGATGCACCAAAGGCTATTACAAAGATCCTCAAAATACAGCACTGCTAATTGACTCAGACGGTTGGTTACATACTGGAGATATAGGAGAATGGACCTCAGAAGGTTCATTGATGTTAGTTGATCGAGTTAAAAGTATTTTCAAGTTGGCTCAAGGTGAATATGTAGCGCCAGAAAGACTGGAAGCACTTTATCAAAGTTGTAGTCTAATTAGTCAAATTTTTATTGATGCCAATCCTAAATCCACTTATCCTGTAGCTATAATAGTGCCAAACTTCGACGAATTACGTGAATCACTTAGCAAGACAGACCCTGGATTGGTTAATTTATCCGATCATG ] [+] EMBL CD067298 [ GTGAAAGGTAAGCGATGCACCAAAGGCTATTACAAAGATCCTCAAAATACAGCACTGCTAATTGACTCAGACGGTTGGTTACATACTGGAGATATAGGAGAATGGACCTCAGAAGGTTCATTGATGTTAGTTGATCGAGTTAAAAGTATTTTCAAGTTGGCTCAAGGTGAATATGTAGCGCCAGAAAGACTGGAAGCACTNTATCAAAGTTGTAGTCTAATTAGTCAAATTTTTATTGATGCCAATCCTAAATCCACTTA ] [-] EMBL CD076092 [ ATTGCCAATCAAAGATTTCTGAAAGGATTTGAAAAATTGAAGAAAATCCATCTGACTGATGAAACTTTCACAATAGAAAATGGGTTGCTCACTCCAACACTCAAGATTTCCCGATACAAAGCCAGAAAGGTATATTCCGAAATTATAAACAGATTATGTGACGAAATTATGTCTACGGAAAATCATAAATAGAATGAGAATTCAAAACTGGCATACTTGACACGAACTTTATTATATTCATCATATGTTTCTTGTATAACTTCATAACTTTTTGATATATGATTATTTTCAGAATACCGAGCTATATCATTATTTTTCTTGCATTCTGGTTTTTATGATGGTCTCTGCTCTGTTTGTTCATTTATTTATTTCTCTAATATTCT GTTCGGTATTCATATAACTATTAATAACTTTTAGAC GATAATGATGATGGCATAAACTAATATTAAATTTCCTGAC TTCTGTAATTCTCTTACTCAAAT AACATTATTTTTCTGATTTTTTTGAAGTATTTTTTATTCCCTTTTTATTTCCCATGTA GGCTTGTATGGAAGAAACGATTTTTCATTTTCCTTACTTTTTATCTAGTTTCATTATTTGGTAACATTTGTGTCCAATATC ] [-] EMBL CD072340 [ TTTGAAAAA TGAAGAGAATCCATCTGACTGATGAAACTCTCACAATAGAAAATGGGTTGCTCACTCCAACACTCAAGATTTCCCGATACAAAGCCAGAAAGGTATATTCCGAAATTATAAACAGATTATGTGACGAAATTATGTCTACGGAAAGTCATAAATAGAATGAGAATTCAAA ] [-] EMBL CD067406 [ ACTTTCACAATAGAAAATGGGTTGCTCACTCCAACACTCAAGATTTCCCGATACAAAGCCAGAAAGGTATATTCCGAAATTATAAACAGATTATGTGACGAAATTATGTCTACGGAAAATCATAAATAGAATGAGAATTCAAAACTGGCATACTTGACACGAACTTTATTATATTCATCATATGTTTCTTGTATAACTTCATAACTTTTTGATATATGATTATTTTCAGAATACCGAGCTATATCATTATT ] consensusID : consensus_9213#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 692 fasta sequence [CCCTCCGAGGCCANAATTCGGCACGAGGGTGAAAGGTAAGCGATGCACCAAAGGCTATTACAAAGATCCTCAAAATACAGCACTGCTAATTGACTCAGACGGTTGGTTACATACTGGAGATATAGGAGAATGGACCTCAGAAGGTTCATTGATGTTGGTTGATCGAGTTAAAAGTATTTTCAAGTTGGCTCAAGGTGAATATGTAGCGCCAGAAAGACTGGAAGCACTTTATCAAAGTTGTAGTCTAATTAGTCAAATTTTTATTGATGCCAATCCTAAATCCACTTATCCTGTAGCTATAATAGTGCCAAACTTCGACGAATTACGTGAATCACTTAGCAAGACAGACCCTGGATTGGTTAATTTATCCGATCATGATTTATGTCAACATGAAATTATCCATCGAAAATATTTAAATGTTTTGGATCAAATTGCCAATCAAAGATTTCTGAAAGGATTTGAAAAATTGAAGAAAATCCATCTGACTGATGAAACTTTCACAATAGAAAATGGGTTGCTCACTCCAACACTCAAGATTTCCCGATACAAAGCCAGAAAGGTATATTCCGAAATTATAAACAGATTATGTGACGAAATTATGTCTACGGAAAATCATAAATAGAATGAGAATTCANAACTGGCATACTTGACACGAACTNTATTATATTCATCATATGTTTCTTGTATAACTT] [+] EMBL CD082497 [CCCTCCGAGGCCANAATTCGGCACGAGGGTGAAAGGTAAGCGATGCACCAAAGGCTATTACAAAGATCCTCAAAATACAGCACTGCTAATTGACTCAGACGGTTGGTTACATACTGGAGATATAGGAGAATGGACCTCAGAAGGTTCATTGATGTTGGTTGATCGAGTTAAAAGTATTTTCAAGTTGGCTCAAGGTGAATATGTAGCGCCAGAAAGACTGGAAGCACTTTATCAAAGTTGTAGTCTAATTAGTCAAATTTTTATTGATGCCAATCCTAAATCCACTTATCCTGTAGCTATAATAGTGCCAAACTTCGACGAATTACGTGAATCACTTAGCAAGACAGACCCTGGATTGGTTAATTTATCCGATCATGATTTATGTCAACATGAAATTATCCATCGAAAATATTTAAATGTTTTGGATCAAATTGCCAATCAAAGATTTCTGAAAGGATTTGAAAAATTGAAGAAAATCCATCTGACTGATGAAACTTTCACAATAGAAAATGGGTTGCTCACTCCAACACTCAAGATTTCCCGATACAAAGCCAGAAAGGTATATTCCGAAATTATAAACAGATTATGTGACGAAATTATGTCTACGGAAAATCATAAATAGAATGAGAATTCANAACTGGCATACTTGACACGAACTNTATTATATTCATCATATGTTTCTTGTATAACTT] consensusID : consensus_9213#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 387 fasta sequence [TATGTTTCTTGTATAACTTCATAACTTTCTGATATATGATTATTTTCAGAATACCGAGCTATATCATTAGTTTTCTGGCATTCTGGTTTTTATGATGGTCTCTGCTCTGTTTGTTCATTTATTTATTTCTCTAATATTCTGTTCGGTATTCATATAACTATTAATAACTTTTAGACGATAATGATGATGGCATAAACTAATAGTAAATTTCCTGACTTCTGTAATTCTCTTACTCAAATAACATTATTGTTCTGAGTTTTTTTGAAGTATTTTTTATTCCCTTGTTATTTCCCAAGTAGGCTTGTATGGAAGAAACGATTTTTCATTGTTCCGTTACTTCTTTATCTAGTTTCATTATGTGGTAACATTTGTTGTCCAAATATCATG] [-] EMBL CD065522 [TATGTTTCTTGTATAACTTCATAACTTTCTGATATATGATTATTTTCAGAATACCGAGCTATATCATTAGTTTTCTGGCATTCTGGTTTTTATGATGGTCTCTGCTCTGTTTGTTCATTTATTTATTTCTCTAATATTCTGTTCGGTATTCATATAACTATTAATAACTTTTAGACGATAATGATGATGGCATAAACTAATAGTAAATTTCCTGACTTCTGTAATTCTCTTACTCAAATAACATTATTGTTCTGAGTTTTTTTGAAGTATTTTTTATTCCCTTGTTATTTCCCAAGTAGGCTTGTATGGAAGAAACGATTTTTCATTGTTCCGTTACTTCTTTATCTAGTTTCATTATGTGGTAACATTTGTTGTCCAAATATCATG] consensusID : consensus_9213#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 163 fasta sequence [GTATTTAATGGACTTATTGTCGAAGGCTTTGGTTGCACAGAGACTATGGGAGTTGTAACGGTATCTTTAGTCGGAGAATTTCGCATTGGTGCTTTGGGTGCAGTTGCTTATGGTGTAGAAGTCAAATTGGCCGACGTATTAGATTTAGGTCTTGTTGTCAAAA] [+] EMBL CD182974 [GTATTTAATGGACTTATTGTCGAAGGCTTTGGTTGCACAGAGACTATGGGAGTTGTAACGGTATCTTTAGTCGGAGAATTTCGCATTGGTGCTTTGGGTGCAGTTGCTTATGGTGTAGAAGTCAAATTGGCCGACGTATTAGATTTAGGTCTTGTTGTCAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9213#1 ------------------------------------------------------------ consensus_9213#3 ------------------------------------------------------------ consensus_9213#0 AGCCATATTCGGCCGACGCGCTTGGTGCTTTGGGTGCAGTTGCTTATGGTGTAGAAGTCA 60 consensus_9213#2 ------------------------------------------------------------ consensus_9213#1 ----------------------------------CCCTCCGAGGCCANAATTCGGCACGA 26 consensus_9213#3 ------------------------------------------------------------ consensus_9213#0 AATTGGCCGACGTATTAGATTTAGGTCTTGTTGTCAAAAGAGATAATCGAGGAGAGATAT 120 consensus_9213#2 ------------------------------------------------------------ consensus_9213#1 GGGTGAAAGGTAAGCGATGCACCAAAGGCTATTACAAAGATCCTCAAAATACAGCACTGC 86 consensus_9213#3 ------------------------------------------------------------ consensus_9213#0 GTGTGAAAGGTAAGCGATGCACCAAAGGCTATTACAAAGATCCTCAAAATACAGCACTGC 180 consensus_9213#2 ------------------------------------------------------------ consensus_9213#1 TAATTGACTCAGACGGTTGGTTACATACTGGAGATATAGGAGAATGGACCTCAGAAGGTT 146 consensus_9213#3 ------------------------------------------------------------ consensus_9213#0 TAATTGACTCAGACGGTTGGTTACATACTGGAGATATAGGAGAATGGACCTCAGAAGGTT 240 consensus_9213#2 ------------------------------------------------------------ consensus_9213#1 CATTGATGTTGGTTGATCGAGTTAAAAGTATTTTCAAGTTGGCTCAAGGTGAATA--TGT 204 consensus_9213#3 ---------------------------GTATTT---AATGGACTTATTGTCGAAGGCTTT 30 consensus_9213#0 CATTGATGTTAGTTGATCGAGTTAAAAGTATTTTCAAGTTGGCTCAAGGTGAATA--TGT 298 consensus_9213#2 ----TATGTTTCTTGTATAACTTCATAACTTTCTGATATATGATTATTTTCAGAATACCG 56 ** * * * * consensus_9213#1 AGCGCCAGAAAGACTGGAAGCACTTTATCAAAGTTGTAGTCTAATTAGTCAAATTTTTAT 264 consensus_9213#3 GGTTGCACAGAGACTATGGGAGTTGTAACGGTATC----TTTAGTCGGAGAATTTCGCAT 86 consensus_9213#0 AGCGCCAGAAAGACTGGAAGCACTTTATCAAAGTTGTAGTCTAATTAGTCAAATTTTTAT 358 consensus_9213#2 AGCT------ATATCATTAGTTTTCTGGCATTCTGGTTTTTATGATGGTCTCTGCTCTGT 110 * * * * * * * * * * * consensus_9213#1 TGATGCCAATCCTAAATCCACTTATCCTGTAGCTATAAT--AGTGCCAAACTTCGACGAA 322 consensus_9213#3 TGGTGCTTTGGGTGCAGTTGCTTATGGTGTAGAAGTCAA--ATTGGCCGACGTATTAGAT 144 consensus_9213#0 TGATGCCAATCCTAAATCCACTTATCCTGTAGCTATAAT--AGTGCCAAACTTCGACGAA 416 consensus_9213#2 TTGTTCATTTATTTATTTCTCTAATATTCTGTTCGGTATTCATATAACTATTAATAACTT 170 * * * * ** ** * * * * * consensus_9213#1 TTACGTGAATCACTTAGCAAGACAGACCCTGGATTGGTTAATTTATCCGATCATGATTTA 382 consensus_9213#3 TTAGGT---CTTGTTGTCAAAA-------------------------------------- 163 consensus_9213#0 TTACGTGAATCACTTAGCAAGACAGACCCTGGATTGGTTAATTTATCCGATCATGATTTA 476 consensus_9213#2 TTAGACGATAATGATGATGGCATAAACTAATAGTAAATTTCCTGACTTCTGTAATTCTCT 230 *** * * consensus_9213#1 TGTCAACATGAAATTATCCATCGAAAATATTTAAATGTTTTGGATCAAATTGCCAATCAA 442 consensus_9213#3 ------------------------------------------------------------ consensus_9213#0 TGTCAACATGAAATTATCCATCGAAAATATTTAAATGTTTTGGATCAAATTGCCAATCAA 536 consensus_9213#2 TACTCAAATAACATTATTGTTCTGAGTTTTTTTGAAGTATTTTTT----ATTCCCTTGTT 286 consensus_9213#1 AGATTTCTGAAAGGATTTGAAAAATTGAAGAAAATCCATCTGACTGATGAAACTTTCACA 502 consensus_9213#3 ------------------------------------------------------------ consensus_9213#0 AGATTTCTGAAAGGATTTGAAAAATTGAAGAAAATCCATCTGACTGATGAAACTTTCACA 596 consensus_9213#2 ATTTCCCAAGTAGGCTTGTATGGAAGAAACGATTTTTCATTGTTCCGTTACTTCTTTATC 346 consensus_9213#1 ATAGAAAATGGGTTGCTCACTCCAACACTCAAGATTTCCCGATACAAAGCCAGAAAGGTA 562 consensus_9213#3 ------------------------------------------------------------ consensus_9213#0 ATAGAAAATGGGTTGCTCACTCCAACACTCAAGATTTCCCGATACAAAGCCAGAAAGGTA 656 consensus_9213#2 TAGTTTCATTATGTGGTAACATTTGTTGTCCAAATATCATG------------------- 387 consensus_9213#1 TATTCCGAAATTATAAACAGATTATGTGACGAAATTATGTCTACGGAAAATCATAAATAG 622 consensus_9213#3 ------------------------------------------------------------ consensus_9213#0 TATTCCGAAATTATAAACAGATTATGTGACGAAATTATGTCTACGGAAAATCATAAATAG 716 consensus_9213#2 ------------------------------------------------------------ consensus_9213#1 AATGAGAATTCANAACTGGCATACTTGACACGAACTNTATTATATTCATCATATGTTTCT 682 consensus_9213#3 ------------------------------------------------------------ consensus_9213#0 AATGAGAATTCAAAACTGGCATACTTGACACGAACTTTATTATATTCATCATATGTTTCT 776 consensus_9213#2 ------------------------------------------------------------ consensus_9213#1 TGTATAACTT-------------------------------------------------- 692 consensus_9213#3 ------------------------------------------------------------ consensus_9213#0 TGTATAACTTCATAACTTTTTGATATATGATTATTTTCAGAATACCGAGCTATATCATTA 836 consensus_9213#2 ------------------------------------------------------------ consensus_9213#1 ------------------------------------------------------------ consensus_9213#3 ------------------------------------------------------------ consensus_9213#0 TTNNTCTTGCATTCTGGTTTTTATGATGGTCTCTGCTCTGTTTGTTCATTTATTTATTNC 896 consensus_9213#2 ------------------------------------------------------------ consensus_9213#1 ------------------------------------------------------------ consensus_9213#3 ------------------------------------------------------------ consensus_9213#0 TCTAATATTCTGGGTCGGATTCATATAACTATTAATAACTNNTAGACNGATATGATGATG 956 consensus_9213#2 ------------------------------------------------------------ consensus_9213#1 ------------------------------------------------------------ consensus_9213#3 ------------------------------------------------------------ consensus_9213#0 GCATAAACTAATATTAAATTTTCTGACTTTCTGTAATCTCTTACTCAAATAAACATATTT 1016 consensus_9213#2 ------------------------------------------------------------ consensus_9213#1 ------------------------------------------------------------ consensus_9213#3 ------------------------------------------------------------ consensus_9213#0 TCTGATTNTTTTGAGTATTTTTATTCCCTTTTATTTCCATGTANGGCTGATGGAAGAACA 1076 consensus_9213#2 ------------------------------------------------------------ consensus_9213#1 ------------------------------------------------- consensus_9213#3 ------------------------------------------------- consensus_9213#0 TTTTCATTTCCTACTTTTATCANNTATATTTGGACATTGTGCCATATCT 1125 consensus_9213#2 ------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||