These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9215#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1163 fasta sequence [GCGTTACAGTAGCCAGCACCCCAAGTCAATGATGGACATATTTATGTGATTGAGTATTACTGGTCTCTACTATCTAAATCTTGATAAATTTTTCCGTCAATCAGGTTCAAGATTCGTTTTCATTAGCGAGGAATATGCTGAATCCAAACGAAGATACTGAATGGAACGATATTTTACGTCAGAAGGGGATTTTACCACCGAAAAAAATTGAACCTGAAGAAGAACTTCCTCCACCTCCAGATTCCAGTAAATACTATTGGTTTTTTAAATACAATTCTACCTTTACTTCANAGAGAGAATTATTAAATATTCATATTTTTAGAATCTANTTTAGATAAATTGACATCAGATGAGTTAGATGAGAAATTCGATTTATTGGAAGATGGAGAGATTGATGGTGAAGAGGCTCGTTTCCTTGAAGAATATCGACGTAAGCGCATTGGGATGATGCAGGAAATGGCATCAAAAGCTCGTTTTGGTAGTGTACGGGAAGTCACCAAAGCCGATTGGATAACGGAAGTGACAAATGCTGGTGATACGTTTGTTGTAATTCATGTTGGGGAAAAAGGGCATGGA-TATGCAGTTTAATCGACCAACATTTTCGTAAATTAGCACAAAAGTTTCCTACAGTGAAATTTCTTCGTGGTGAAGCTAGTTTATGTATTCCAAACTATCCAACAAGCAACTTACCATCAATTCTTATCTATAAATCTGGTGACTTAAAAGAACAGTCAATTGGTCCTGAAGCTATTGGTGGAAATATGGTCACTTCGAAAGAATTGGAATGGCATTTAGCCAAATTAGGTGTATTAGAATCGAAATTAACTAAAGATCCATCGAAAAGAATGAATATTAAACTGGCTCATAGTAATCGTATCAAACATATAGTTAGTGGATCGTCTGATAACGATGAGACTGACGACGATGATGATGATGATGATGATTAAAGAACATTTTCAATAAATTAGTCGATATGATTTTCTCGTCTCGTGCTCAAAACCGTACGGCCTTATTATCCATTTCGCGCCAAAATACTATTTGCATGTGTATATTATTATGATGTTATTGTTTTTCAATTTTAACAAATTATGGATTGAATTCATTCTGCCTTTAAATTAGTTTACTTATATTGAATTGAATTGTTTCGAATAATAATAGGGTTC] [+] EMBL CD144306 [GCGTTACAGTAGCCAGCACCCCAAGTCAATGATGGACATATTTATGTGATTGAGTATTACTGGTCTCTACTATCTAAATCTTGATAAATTTTTCCGTCAATCAGGTTCAAGATTCGTTTTCATTAGCGAGGAATATGCTGAATCCAAACGAAGATACTGAATGGAACGATATTTTACGTCAGAAGGGGATTTTACCACCGAAAAAAATTGAACCTGAAGAAGAACTTCCTCCACCTCCAGATTCCAGTAAATACTATTGGTTTTTTAAATACAATTCTACCTTTACTTCANAGAGAGAATTATTAAATATTCATATTTTTAGAATCTANTTTAGATAAATTGAC ] [-] EMBL CD132341 [ GAAGAACTTCCTCCACCTCCAGATTCCAGTAAATACTATTGGTTTTTTAAATACAATTCTACCTTTACTTCAAAGAGAGAATTATTAAATATTCATATTTTTAGAATCTATTTTAGATAAATTGACATCAGATGAGTTAGATGAGAAATTCGATTTATTGGAAGATGGAGAGATTGATGGTGAAGAGGCTCGTTTCCTTGAAGAATATCGACGTAAGCGCATTGGGATGATGCAGGAAATGGCATCAAAAGCTCGTTTTGGTAGTGTACGGGAAGTCACCAAAGCCGATTGGATAACGGAAGTGACAAATGCTGGTGATACGTTTGTTGTAATTCATGTTGGGGAAAAAGGGCATGGA TATGCAGTTTAATCGACCAACATTTTCGTAAATTAGCACAAA ] [-] EMBL CD190939 [ GGAGAGATTGATGGTGAAGAGGCTCGTTTCCTTGAAGAATATCGACGTAAGCGCATTGGGATGATGCAGGAAATGGCATCAAAAGCTCGTTTTGGTAGTGTACGGGAAGTCACCAAAGCCGATTGGATAACGGAAGTGACAAATGCTGGTGATACGTTTGTTGTAATTCATGTTGGGGAAAAAGGGCATGGATTATGCAGTTTAATCGACCAACATTTTCGTAAATTAGCACAAAAGTTTCCTACAGTGAAATTTCTTCGTGGTGAAGCTAGTTTATGTATTCCAAACTATCCAACAAGCAACTTACCATCAATTCTTATCTATAAATCTGGTGACTTAAAAGAACAGTCAA ] [-] EMBL AI976124 [ GTATTCCAAACTATTCAACAAGCAACTTACCATCAATTCTTATCTATAAATCTGGTGACTTAAAAGAACAGTCAATTGGTCCTGAAGCTATTGGTGGAAATATGGTCACTTCGAAAGAATTGGAATGGCATTTAGCCAAATTAGGTGTATTAGAATCGAAATTAACTAAAGATCCATCGAAAAGAATGAATATTAAACTGGCTCATAGTAATCGTATCAAACATATAGTTAGTGGATCGTCTGATAACGATGAGACTGACGACGATGATGATGATGATGATGATTAAAGAACATTTTCAATAAATTAGTCGATATGATTTTCTCGTCTCGTGCTCAAAACCGTACGGCCTTATTATCCATTTCGCGCCAAAATACTATTTGCATGTGTATATTATTATGATGTTATTGTTTTTCAATTTTAACAAATTATGGATTGAATTCATTCTGCCTTTAAATTAGTTTACTTATATTGAATTGAATTGTTTCGAATAATAATAGGGTTC] [-] EMBL AI976113 [ GTGACTTAAAAGAACAGTCAATTGGTCCTGAAGCTATTGGTGGAAATATGGTCACTTCGAAAGAATTGGAATGGCATTTAGCCAAATTAGGTGTATTAGAATCGAAATTACCTAAAGATCCATCGTAAAGAATGAATATTAAACTGGCTCATAGTAATCGTATCAAACATATAGTTAGTGGATAGTGTGATAACGATAAGACTGACGTCGATGATGATGATGATGATGATTAAAGAACATTTTCAATAAATTAGTCGATATGATTTTCTCGTGTCGTGCTCAAAACCGTACGGCCTTATTATCCATTTAGCGCCAAAATACAATTTGCATGTGTATATTATTATGATGGTACTGTTTTTCAATTTTAACAAATTATGGATTGAATTCATTCTGCCTTTAAATTAGTTTACTTATATTGAATTGAATTGTTTCGAATAATAATAGGGTTC] consensusID : consensus_9215#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 777 fasta sequence [AGGGCCAGAATTCGGCACGAGGGCGTTTTCATTAGCGAGGAATATGCACGAATCCAAACGAAGATACTGAATGGAACGATATTTTACGTCAGAAGGGGATTTTACCACCGAAAAAAATTGAACCTGAAGAAGAACTTCCTCCACCTCCAGATTCCAAATCTATTTTAGATAAATTGACATCAGATGAGTTAGATGAGAAATTCGATTTATTGGAAGATGGAGAGATTGATGGTGAAGAGGCTCGTTTCCTTGAAGAATATCGACGTAAGCGCATTGGGATGATGCAGGAAATGGCATCAAAAGCTCGTTTTGGTAGTGTACGGGAAGTCACCAAAGCCGATTGGATAACGAAGTGACAAATGCTGGTGATACGTTTGTTGTAATTCATGTTGGGGAAAAAGGGCATGGATTATGCAGTTTAATCGACCAACATTTTCGTAAATTAGCACAAAAGTTTCCTACAGTGAAATTTCTTCGTGGTGAAGCTAGTTTATGTATTCCAAACTATCCAACTAAAGATCCATCGAAAAGAATGAATATTAAACTGGCTCATAGTAATCGTATCAAACATATAGTTAGTGGATCGTCTGATAACGATGAGACTGACGACGATGATGATGATGATGATGATTAAAGAACATTTTCAATAAATTAGTCGATATGATTTTCTCGTCTCGTGCTC-AAACCGTACGGCCTTATTATCCATTTCGCGCC-AAATACTATTTGCATGTGTATATTATTATGATGGTATGGNNTTTCAATTNTACCCAATATTGG] [+] EMBL CD079963 [AGGGCCAGAATTCGGCACGAGGGCGTTTTCATTAGCGAGGAATATGCACGAATCCAAACGAAGATACTGAATGGAACGATATTTTACGTCAGAAGGGGATTTTACCACCGAAAAAAATTGAACCTGAAGAAGAACTTCCTCCACCTCCAGATTCCAAATCTATTTTAGATAAATTGACATCAGATGAGTTAGATGAGAAATTCGATTTATTGGAAGATGGAGAGATTGATGGTGAAGAGGCTCGTTTCCTTGAAGAATATCGACGTAAGCGCATTGGGATGATGCAGGAAATGGCATCAAAAGCTCGTTTTGGTAGTGTACGGGAAGTCACCAAAGCCGATTGGATAACGAAGTGACAAATGCTGGTGATACGTTTGTTGTAATTCATGTTGGGGAAAAAGGGCATGGATTATGCAGTTTAATCGACCAACATTTTCGTAAATTAGCACAAAAGTTTCCTACAGTGAAATTTCTTCGTGGTGAAGCTAGTTTATGTATTCCAAACTATCCAACTAAAGATCCATCGAAAAGAATGAATATTAAACTGGCTCATAGTAATCGTATCAAACATATAGTTAGTGGATCGTCTGATAACGATGAGACTGACGACGATGATGATGATGATGATGATTAAAGAACATTTTCAATAAATTAGTCGATATGATTTTCTCGTCTCGTGCTC AAACCGTACGGCCTTATTATCCATTTCGCGCC AAATACTATTTGCATGTGTATATTATTATGATGGTATGGNNTTTCAATTNTACCCAATAT ] [-] EMBL CD074157 [ AACCTGAAGAAGAACTTCCTCCACCTCCAGATTCCAAATCTATTTTAGATAAATTGACATCAGATGAGTTAGATGAGAAATTCGATTTATTGGAAGATGGAGAGATTGATGGTGAAGAGGCTCGTTTCCTTGAAGAATATCGACGTAAGCGCATTGGGATGATGCAGGAAATGGCATCAAAAGCTCGTTTTGGTAGTGTACGGGAAGTCACCAAAGCCGATTGGATAACGAAGTGACAAATGCTGGTGATACGTTTGTTGTAATTCATGTTGGGGAAAAAGGGCATGGATTATGCAGTTTAATCGACCAACATTTTCGTAAATTAGCACAAAAGTTTCCTACAGTGAAATTTCTTCGTGGTGAAGCTAGTTTATGTATTCCAAACTATCCAACTAAAGATCCATCGAAAAGAATGAATATTAAACTGGCTCATAGTAATCGTATCAAACATATAGTTAGTGGATCGTCTGATAACGATGAGACTGACGACGATGATGATGATGATGATGATTAAAGAACATTTTCAATAAATTAGTCGATATGATTTTCTCGTCTCGTGCTCAAAACCGTACGGCCTTATTATCCATTTCGCGCCAAAATACTATTTGCATGTGTATATTATTATGATGTTATTGTTTTTCAATTTTAACAAATTATGG] consensusID : consensus_9215#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 466 fasta sequence [CGTTACAGTAGCCAGCACCCCAAGTCAATGATGGACATATTTATGTGATTGAGTATTACTGGTCTCTACTATCTAAATCTTGATAAATTTTTCCGTCAATCAGGTTCAAGATTCGTTTTCATTAGCGAGGAATATGCTGAATCCAAACGAAGATACTGAATGGAACGATATTTTACGTCAGAAGGGGATTTTACCACCNGAAAAAAATTGAACCTGAAGAAGAACTTCCTCCACCTCCAGATTCCAAATCTATTTTAGATAAATTGACATCAGATGAGTTAGATGAGAAATTCGATTTATTGGAAGATGGAGAGATTGATGGTGAAGAGGCTCGTTTCCTTGAAGAATATCGACGTAAGCGCATTGGGATGATGCAGGAAATGGCATCAAAAGCTCGTTTTGGTAGTGTACGGGAAGTCACCAAAGCCGATTGGATTACGGAAGTGACCAATGCTGGTGATACGTT] [+] EMBL CD144964 [CGTTACAGTAGCCAGCACCCCAAGTCAATGATGGACATATTTATGTGATTGAGTATTACTGGTCTCTACTATCTAAATCTTGATAAATTTTTCCGTCAATCAGGTTCAAGATTCGTTTTCATTAGCGAGGAATATGCTGAATCCAAACGAAGATACTGAATGGAACGATATTTTACGTCAGAAGGGGATTTTACCACCNGAAAAAAATTGAACCTGAAGAAGAACTTCCTCCACCTCCAGATTCCAAATCTATTTTAGATAAATTGACATCAGATGAGTTAGATGAGAAATTCGATTTATTGGAAGATGGAGAGATTGATGGTGAAGAGGCTCGTTTCCTTGAAGAATATCGACGTAAGCGCATTGGGATGATGCAGGAAATGGCATCAAAAGCTCGTTTTGGTAGTGTACGGGAAGTCACCAAAGCCGATTGGATTACGGAAGTGACCAATGCTGGTGATACGTT] [+] EMBL CD156334 [ AATTGAACCAGAAGAAGAACTTCCTCCACCTCCAGATTCCAAATCTATTTTAGATAAATTGACATCAGATGAGTTAGATGAGAAATTCGATTTATTGGAAGATGGAGAGATTGATGGTGAAGAGGCTCGTTTCCTTGAAGAATATCGACGTAAGCGCATTGGGATGATGCAGGAAATGGCATCAAAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9215#0 GCGTTACAGTAGCCAGCACCCCAAGTCAATGATGGACATATTTATGTGATTGAGTATTAC 60 consensus_9215#2 -CGTTACAGTAGCCAGCACCCCAAGTCAATGATGGACATATTTATGTGATTGAGTATTAC 59 consensus_9215#1 ------------------------------------------------------------ consensus_9215#0 TGGTCTCTACTATCTAAATCTTGATAAATTTTTCCGTCAATCAGGTTCAAGATTCGTTTT 120 consensus_9215#2 TGGTCTCTACTATCTAAATCTTGATAAATTTTTCCGTCAATCAGGTTCAAGATTCGTTTT 119 consensus_9215#1 ------------------------------AGGGCCAGAATTCGGCACGAGGG-CGTTTT 29 * *** ** * ** ****** consensus_9215#0 CATTAGCGAGGAATATGC-TGAATCCAAACGAAGATACTGAATGGAACGATATTTTACGT 179 consensus_9215#2 CATTAGCGAGGAATATGC-TGAATCCAAACGAAGATACTGAATGGAACGATATTTTACGT 178 consensus_9215#1 CATTAGCGAGGAATATGCACGAATCCAAACGAAGATACTGAATGGAACGATATTTTACGT 89 ****************** **************************************** consensus_9215#0 CAGAAGGGGATTTTACCACCG-AAAAAAATTGAACCTGAAGAAGAACTTCCTCCACCTCC 238 consensus_9215#2 CAGAAGGGGATTTTACCACCNGAAAAAAATTGAACCTGAAGAAGAACTTCCTCCACCTCC 238 consensus_9215#1 CAGAAGGGGATTTTACCACCG-AAAAAAATTGAACCTGAAGAAGAACTTCCTCCACCTCC 148 ******************** ************************************** consensus_9215#0 AGATTCCAGTAAATACTATTGGTTTTTTAAATACAATTCTACCTTTACTTCANAGAGAGA 298 consensus_9215#2 AGATTCCA---------------------------------------------------- 246 consensus_9215#1 AGATTCCA---------------------------------------------------- 156 ******** consensus_9215#0 ATTATTAAATATTCATATTTTTAGAATCTANTTTAGATAAATTGACATCAGATGAGTTAG 358 consensus_9215#2 ------------------------AATCTATTTTAGATAAATTGACATCAGATGAGTTAG 282 consensus_9215#1 ------------------------AATCTATTTTAGATAAATTGACATCAGATGAGTTAG 192 ****** ***************************** consensus_9215#0 ATGAGAAATTCGATTTATTGGAAGATGGAGAGATTGATGGTGAAGAGGCTCGTTTCCTTG 418 consensus_9215#2 ATGAGAAATTCGATTTATTGGAAGATGGAGAGATTGATGGTGAAGAGGCTCGTTTCCTTG 342 consensus_9215#1 ATGAGAAATTCGATTTATTGGAAGATGGAGAGATTGATGGTGAAGAGGCTCGTTTCCTTG 252 ************************************************************ consensus_9215#0 AAGAATATCGACGTAAGCGCATTGGGATGATGCAGGAAATGGCATCAAAAGCTCGTTTTG 478 consensus_9215#2 AAGAATATCGACGTAAGCGCATTGGGATGATGCAGGAAATGGCATCAAAAGCTCGTTTTG 402 consensus_9215#1 AAGAATATCGACGTAAGCGCATTGGGATGATGCAGGAAATGGCATCAAAAGCTCGTTTTG 312 ************************************************************ consensus_9215#0 GTAGTGTACGGGAAGTCACCAAAGCCGATTGGATAACGGAAGTGACAAATGCTGGTGATA 538 consensus_9215#2 GTAGTGTACGGGAAGTCACCAAAGCCGATTGGATTACGGAAGTGACCAATGCTGGTGATA 462 consensus_9215#1 GTAGTGTACGGGAAGTCACCAAAGCCGATTGGATAACG-AAGTGACAAATGCTGGTGATA 371 ********************************** *** ******* ************* consensus_9215#0 CGTTTGTTGTAATTCATGTTGGGGAAAAAGGGCATGGATATGCAGTTTAATCGACCAACA 598 consensus_9215#2 CGTT-------------------------------------------------------- 466 consensus_9215#1 CGTTTGTTGTAATTCATGTTGGGGAAAAAGGGCATGGATTATGCAGTTTAATCGACCAAC 431 **** consensus_9215#0 TTTTCGTAAATTAGCACAAAAGTTTCCTACAGTGAAATTTCTTCGTGGTGAAGCTAGTTT 658 consensus_9215#2 ------------------------------------------------------------ consensus_9215#1 ATTTTCGTAAATTAGCACAAAAGTTTCCTACAGTGAAATTTCTTCGTGGTGAAGCTAGTT 491 consensus_9215#0 ATGTATTCCAAACTATCCAACAAGCAACTTACCATCAATTCTTATCTATAAATCTGGTGA 718 consensus_9215#2 ------------------------------------------------------------ consensus_9215#1 TATGTATTCCAAACTATCCAACTAAAGATCCATCGAAAAGAATGAATATTAAACTGGCTC 551 consensus_9215#0 CTTAAAAGAACAGTCAATTGGTCCTGAAGCTATTGGTGGAAATATGGTCACTTCGAAAGA 778 consensus_9215#2 ------------------------------------------------------------ consensus_9215#1 ATAGTAATCGTATCAAACATATAGTTAGTGGATCGTCTGATAACGATGAGACTGACGACG 611 consensus_9215#0 ATTGGAATGGCATTTAGCCAAATTAGGTGTATTAGAATCGAAATTAACTAAAGATCCATC 838 consensus_9215#2 ------------------------------------------------------------ consensus_9215#1 ATGATGATGATGATGATGATTAAAGAACATTTTCAATAAATTAGTCGATATGATTTTCTC 671 consensus_9215#0 GAAAAGAATGAATATTAAACTGGCTCATAGTAATCGTATCAAACATATAGTTAGTGGATC 898 consensus_9215#2 ------------------------------------------------------------ consensus_9215#1 GTCTCGTGCTCAAACCGTACGGCCTTATTATCCATTTCGCGCCAAATACTATTTGCATGT 731 consensus_9215#0 GTCTGATAACGATGAGACTGACGACGATGATGATGATGATGATGATTAAAGAACATTTTC 958 consensus_9215#2 ------------------------------------------------------------ consensus_9215#1 GTATATTATTATGATGGTATGGNNTTTCAATTNTACCCAATATTGG-------------- 777 consensus_9215#0 AATAAATTAGTCGATATGATTTTCTCGTCTCGTGCTCAAAACCGTACGGCCTTATTATCC 1018 consensus_9215#2 ------------------------------------------------------------ consensus_9215#1 ------------------------------------------------------------ consensus_9215#0 ATTTCGCGCCAAAATACTATTTGCATGTGTATATTATTATGATGTTATTGTTTTTCAATT 1078 consensus_9215#2 ------------------------------------------------------------ consensus_9215#1 ------------------------------------------------------------ consensus_9215#0 TTAACAAATTATGGATTGAATTCATTCTGCCTTTAAATTAGTTTACTTATATTGAATTGA 1138 consensus_9215#2 ------------------------------------------------------------ consensus_9215#1 ------------------------------------------------------------ consensus_9215#0 ATTGTTTCGAATAATAATAGGGTTC 1163 consensus_9215#2 ------------------------- consensus_9215#1 ------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||