These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9221#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 626 fasta sequence [TTCTGATAATAGGTAGTACTGGAATTTCAACCAGTTGTCCATCGACTACGACTTTCGTCCTCGCCTTAGGTCCCGACTTACCCAGGGCAGATCAGCTTTACCCTGGAAACCTTGGATATTCGGCCTAGAAGATTCTCACTTCTATCTCGCTACTCATTCCGGCATTCTCACTTGTAATTACTCCACAGCTCCTTACGGTACTGCTTCTGCGTTGTTACAACGCTCCTCTACCAATTGATCTAAGATCAATTCCATAGCTTCGGTGGTATGTTTTAGCCCCGGACATTTTCGGCGCAAGATCTCTCGACTAGTGAGCTATTACGCACTCTTTGAATGTATGGCTGCTTCTAAGCCAACATCCTAGTTGTCTTCGAAATCTCACATCCTTTTCCACTTAACATACACTTTGGGACCTTAGCTGATGGTCTGGGCTCTTTCCCTTTTGACCATGGGTCTTATCACTCATAGTCTGACTGCAGATGGTATCTATATGGCATTCTTAGTTTGATATGCTTCGGTAAGCTTGTAGGCCCCCTAGGCAATTCAGTGCTTTACCTCCATTAGACTCACATCCACGCTAGCCCTAAAGCTATTTCGAGGAGAACCAACTATCTCCAGGTTCGATT] [+] EMBL CD085701 [TTCTGATAATAGGTAGTACTGGAATTTCAACCAGTTGTCCATCGACTACGACTTTCGTCCTCGCCTTAGGTCCCGACTTACCCAGGGCAGATCAGCTTTACCCTGGAAACCTTGGATATTCGGCCTAGAAGATTCTCACTTCTATCTCGCTACTCATTCCGGCATTCTCACTTGTAATTACTCCACAGCTCCTTACGGTACTGCTTCTGCGTTGTTACAACGCTCCTCTACCAATTGATCTAAGATCAATTCCATAGCTTCGGTGGTATGTTTTAGCCCCGGACATTTTCGGCGCAAGATCTCTCGACTAGTGAGCTATTACGCACTCTTTGAATGTATGGCTGCTTCTAAGCCAACATCCTAGTTGTCTTCGAAATCTCACATCCTTTTCCACTTAACATACACTTTGGGACCTTAGCTGATGGTCTGGGCTCTTTCCCTTTTGACCATGGGTCTTATCACTCATAGTCTGACTGCAGATGGTATCTATATGGCATTCTTAGTTTGATATGCTTCGGTAAGCTTGTAGGCCCCCTAGGCAATTCAGTGCTTTACCTCCATTAGACTCACATCCACGCTAGCCCTAAAGCTATTTCGAGGAGAACCAACTATCTCCAGGTTCGATT] consensusID : consensus_9221#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 579 fasta sequence [CGCGCCCCTTAGTATTCTCTACCTCCCCACCTGTGTCGGTTTCGAGTACGGGTAAAACTGCTTCAACACACTACACGCTTTTCTTGA-CACCAATTACAACTAAACGGAGAACGTATTCCCCTCCCAATCCAATCAGGGCATAGTTGCTTCTCAATGCGTCCCGTATAATGCTCCACAATTCTAGTTGAGGAATATTAACCTCATGTCCATCGACTACGACTTTCGTCCTCGCCTTAGGTCCCGACTTACCCAGAGTGGACGAACCTGCCTCTGGAACCCTTGNGGTTTCGGGGTATTGGATTCTCACCAATATTTGCGCTACTCAAGCCGACATTCTCACTTCTATCCAATCCACATCTGCTCGCCGCTAATGCTTCGCATCAGATAGAACGCTCCCCTACCGATTTTTCAATCCCACAGCTTCGGTACAATGTTTAGTCCCGTTCATTTTCGGCGCGCAAGCGCTTGACTAGTGAGCTATTACGCACTCATTCTAGGGTGGCTGCTTCTAGGCAAACCTCCTGGTTGTCTTTGCACTTGCACCTCCTTTCCCACTTAACACTGATTTGGGGACCTTAG] [+] EMBL CD087356 [CGCGCCCCTTAGTATGGGCTACCTCCCCACCTGTGTCGGTTTCGAGTACGGGTAGAACTGCTTCAACACACTACACGCTTTTCTTGA CACCAATTACAACTAAACGGAGAACATATTCCCCTCCCAATCCAATCAGGGCATAGTTGCTTCTCAATGCGTCCCGTATAATGCTCCACAATTCTAGTTGAGGAATATTAACCTCATGTCCATCGACTACGACTTTCGTCCTCGCCTTAGGTCCCGACTTACCCAGAGTGGACGAACCTGCCTCTGGAACCCTTGNGGTTTCGGGGTATTGGATTCTCACCAATATTTGCGCTACTCAAGCCGACATTCTCA ] [+] EMBL CD087292 [CGCGCCCCTTAGTATTCTCTACCTACCCACCTGTGTCGGGTTCGAGTACGGGTAAAACTGCTTCAACACACTACACGCTTTTCTTGA CACCAATTACAACTAAACTGAGAACGTATTCCCCTCCCAATCCAATCACGGCATAGTTGCTTCTCAATGCGTTCCGTATAATGCTCCACAATTCTAGTTGAGGAATATTAACCTCATGT ] [+] EMBL CD087229 [CGCGCCCCTTAGTATTCTCTACCTCCCCACCTGTGTCGGTTTCGAGTACGGGTAAAACTGCTTCAACACACTACACGCTTTTCTTGA CACCAATTACAACTAAACGGAGAACGTATTCCCCTCCCAATCCAATCAGGGCATAGTTGCTTCTCAATGCGTCCCGTATAATGCTCCACAATTCTAGTTGAGGAATATTAACCTCATGTCCATCGACTACGACTTTCGTCCTCGCCTTAGGTCCCGACTTACCCATAGTGGACGA ] [+] EMBL CD087283 [CGCGCCCCTTAGTATTCTCTACCTCCCCACCTGTGTCGGTTTCGAGTACGGGTAAAACTGCTTCAACACACTACACGCTTTTCTTGA CACCAATTACAACTAAACGGAGAACGTATTCCCCTCCCAATCCAATCAGGGCATAGTTGCTTCTCAATGCGTGCCGTATAATGCTCCACAATTCTAGTTGAGGAATATTAACCTCATGTCC ] [+] EMBL CD087351 [ ccacTACGGGTAAAACTGCTTCAACACACTACACGCTTTTCTTGACCACCAATTACAACTAAACGGAGAACGTATTCCCCTCCCAATCCAATCACGGCATAATTGCTTCTCAATGCGTGCCGTATAATGCTCCACAATTCTACTTGAAGAATATTAACCTCATGTCC ] [-] EMBL CD087344 [ AACCCTTGGGGTTTCGGGGTATTGGATTCTCACCAATATTTGCGCTACTCAAGCCGACATTCTCACTTCTATCCAATCCACATCTGCTCGCCGCTAATGCTTCGCATCAGATAGAACGCTCCCCTACCGATTTTTCAATCCCACAGCTTCGGTACAATGTTTAGTCCCGTTCATTTTCGGCGCGCAAGCGCTTGACTAGTGAGCTATTACGCACTCATTCTAGGGTGGCTGCTTCTAGGCAAACCTCCTGGTTGTCTTTGCACTTGCACCTCCTTTCCCACTTAACACTGATTTGGGGACCTTAG] [-] EMBL CD087339 [ TGCTCGCCGCTAATGCTTCGCATCAGATAGAACGCTCCCCTACCGATTTTTCAATCACACAGCTTCGGTACAATGTTTAGTCCCGTTCATTTTCGGCGCGCAAGCGCTTGGCCAGTGAGCTATTACGCACTCATTCTAGGGTGGCTGCTTCTAGGCAAACCTCCTGGTTGTCTTTGCACTTGCACCTCCTTTCCCACTTAACACTGATTTAGGGACCTTAG] [-] EMBL CD087273 [ ACTCATTTTAGGGTGGCTGCTTTTAGGCAAACCTTCTGGTTGTCTTTGCACTTGCACCTCCTTTCCCACTTAACATTGATTTGGGGACCTTAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9221#0 ------------------------------------------------------------ consensus_9221#1 CGCGCCCCTTAGTATTCTCTACCTCCCCACCTGTGTCGGTTTCGAGTACGGGTAAAACTG 60 consensus_9221#0 ------------------------------------------------------------ consensus_9221#1 CTTCAACACACTACACGCTTTTCTTGACACCAATTACAACTAAACGGAGAACGTATTCCC 120 consensus_9221#0 -------------------------------------------------TTCTGATAATA 11 consensus_9221#1 CTCCCAATCCAATCAGGGCATAGTTGCTTCTCAATGCGTCCCGTATAATGCTCCACAATT 180 * *** consensus_9221#0 GGTAGTACTGGAATTTCAACCAGTTGTCCATCGACTACGACTTTCGTCCTCGCCTTAGGT 71 consensus_9221#1 C-TAGTTGAGGAATATTAACCTCATGTCCATCGACTACGACTTTCGTCCTCGCCTTAGGT 239 **** ***** * **** ************************************ consensus_9221#0 CCCGACTTACCCAGGGCAGATCAGCTTTACCCTGGAAACCTTGGATATTCGGCCTAGAAG 131 consensus_9221#1 CCCGACTTACCCAGAGTGGACGAACCTGCCTCTGGAACCCTTGNGGTTTCGGGGTATTGG 299 ************** * ** * * * * ****** ***** ***** ** * consensus_9221#0 ATTCTCACTTCTATCT-CGCTACTCATTCCGGCATTCTCACTTGTAATTACTCCACAGCT 190 consensus_9221#1 ATTCTCACCAATATTTGCGCTACTCAAGCCGACATTCTCACTTCTATCCAATCCACATCT 359 ******** *** * ********* *** *********** ** * ****** ** consensus_9221#0 CCTTACGG-TACTGCTTCTGCGTTGTTACAACGCTCCTCTACCAATTGATCTAAGATCAA 249 consensus_9221#1 GCTCGCCGCTAATGCTTCGCATCAGATAGAACGCTCCCCTACCGATT-------TTTCAA 412 ** * * ** ****** * ** ******** ***** *** **** consensus_9221#0 TTCCATAGCTTCGGTGGTATGTTTTAGCCCCGGACATTTTCGGCGCAAGATCTCTCGACT 309 consensus_9221#1 TCCCACAGCTTCGGTACAATGTTT-AGTCCCGTTCATTTTCGGCGCGCAAGCGCTTGACT 471 * *** ********* ****** ** **** ************ * * ** **** consensus_9221#0 AGTGAGCTATTACGCACTCTTTGAATGTATGGCTGCTTCTAAGCCAACATCCTAGTTGTC 369 consensus_9221#1 AGTGAGCTATTACGCACTCATTCTA-GGGTGGCTGCTTCTAGGCAAACCTCCTGGTTGTC 530 ******************* ** * * ************ ** *** **** ****** consensus_9221#0 TTCGAAATCTCACATCCTTTTCCACTTAACATACACTTTGGGACCTTAGCTGATGGTCTG 429 consensus_9221#1 TTTGCACTTGCACCTCCTTTCCCACTTAACACTGATTTGGGGACCTTAG----------- 579 ** * * * *** ****** ********** * ** ********** consensus_9221#0 GGCTCTTTCCCTTTTGACCATGGGTCTTATCACTCATAGTCTGACTGCAGATGGTATCTA 489 consensus_9221#1 ------------------------------------------------------------ consensus_9221#0 TATGGCATTCTTAGTTTGATATGCTTCGGTAAGCTTGTAGGCCCCCTAGGCAATTCAGTG 549 consensus_9221#1 ------------------------------------------------------------ consensus_9221#0 CTTTACCTCCATTAGACTCACATCCACGCTAGCCCTAAAGCTATTTCGAGGAGAACCAAC 609 consensus_9221#1 ------------------------------------------------------------ consensus_9221#0 TATCTCCAGGTTCGATT 626 consensus_9221#1 ----------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||