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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9224#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 791 fasta sequence
[GGCTTCCCGTGTTGTTATCAAATTGTTCGATTTGAATTCGACAAGTTTTTCTAACTTATTACAATCATTGCCTCGTGGAGTGCAAGATCGTGCACATGAAGTATTAAAAACCTATCAAAAGACTGCTACAGGTGGCGGTCTAATCAATTTAACCGACACTAATCATAATTCTCCCTCATGGAAATCATCTTCAGGATCATTGAGGAAGTATTCTCTGCCTGTAACAACAGCAGGTCGAAGTTCTATGACTAGATCTGTTGATCAAGATCATATGATTTTCTCACCACCAAGTAGTGGACGATATGGATCAATTAGTGGACCATATTATTCTTCACAACGTTCTCATAACTCTGCTGGTAGTGACAGTGGTCGAGTAAGCCCTGAAAGTATGAATCGTATTATTCGTGAAACAACTGATGGTCTTCAATCACTTTCAATGGGTGCGAGTGGGGGTGGTATTCTAACTTCAGTAGGAATAACAAGTCCAACACGCAGAGTATCCGCTGATCCCAGCTTTACAACTAACGATTATACATATGCTACAAATGGTAATACAGGTGTATTACGTACAGTTCAACCAAATAATTTCCCTAATTCACAACCAACAGCATTACAGTCACCTAATATTATTCCTTCTAATGTAAATCCATCATATGCTTCCTCACAAGGTACTACTGCTTCTAATGATCCAACACTTCAGTCTACATATGGTTTACGTACAAATAAGGCTCTTTTAAATACACTTATCAATTATGATCCTGGTGATGAAATGCCCCCAGAAGATATCATGT]
[-] EMBL CD200996 [GGCTTCCCGTGTTGTTATCAAATTGTTCGATTTGAATTCGACAAGTTTTTCTAACTTATTACAATCATTGCCTCGTGGAGTGCAAGATCGTGCACATGAAGTATTAAAAACCTATCAAAAGACTGCTACAGGTGGCGGTCTAATCAATTTAACCGACACTAATCATAATTCTCCCTCATGGAAATCATCTTCAGGATCATTGAGGAAGTATTCTCTGCCTGTAACAACAGCAGGTCGAAGTTCTATGACTGGATCTGTTGATCAAGATCATATGATTTTCTCACCACCAAGTAGTGGACGATATGGATCAATTAGTGGACCATATTATTCTTCACAACGTTCTCACAACTCTGCTGGTAGTGACAGTGGTCGAGTAAGCCCTGAAAGTATGAATCGTATTATTCGTGAAACAACTGATGGTCTTCAATCACTTTCAATGGGTGCGAGTGGGGGTGGTATTCTAACTTCAGTAGGAATAACAAGTCCAACACGCAGAGTA ]
[+] EMBL CD166415 [ CATGAAGTATTAAAAACCTATCAAAAGACTGCTACAGGTGGCGGTCTAATCAATTTAACCGACACTAATCATAATTCTCCCTCATGGAAATCATCTTCAGGATCATAGAAGAATTTTTCTCACCCTGCACCAACAGCAGGACGAAGTTCTATAACTAGATCTGCTGATCAAGATCATATGATTTTCTCACCACCAAGTGGTGGACAATATGGATCAATTAGCGGACCATATTATACTTCACAACGTTCTCATAACTCTGCTGG ]
[+] EMBL CD063858 [ AGTAT CAAACCTATCAAAAGACTGCTACAGGTGGCGGTCTACTCAATTTAACCGACACTAATCATAATTCTCCCTCATGGAAATCATCTTCAGGATCATTGAGGAAGTATTCTCTGCCTGTAACAACAGCAGGTCGAAGTTCTATGACTAGATCTGTTGATCAAGATCATATGATTTTCTCACCACCAAGTAGTGGACGATATGGATCAATTAGTGGACCATATTATTCTTCACAACGTTCTCATAACTCTGCTGGTAGTGACAGTGGTCGAGTAAGCCCTGAAAGTATGAATCGTATTATTCGTGCAACAACTGATGGTCTTCAATCACTTTCAATGGGTGCGAGTGGGGGTGGTATTCTAACTTCAGTAGGAATAACAAGTCCAACACGCAGAGTATCCGCTGATCCCAGCTTTACAACTAACGATTATACATATGCTACAAAT ]
[+] EMBL CD188842 [ TGGTCGAGTAAGCCCTGAAAGTATGAATCGTATTATTCGTGAAACAACTGATGGTCTTCAATCACTTTCAATGGGTGCGAGTGGGGGTGGTATTCTAACTTCAGTAGGAATAACAAGTCCAACACGCAGAGTATCCGCTGATCCCAGCTTTACAACTAACGATTATACATATGCTACAAATGGTAATACAGGTGTATTACGTACAGTTCAACCAAATAATTTCCCTAATTCACAACCAACAGCATTACAGTCACCTAATATTATTCCTTCTAATGTAAATCCATCATATGCTTCCTCACAAGGTACTACTGCTTCTAATGATCCAACACTTCAGTCTACATATGGTTTACGTACAAATAAGGCTCTTTTAAATACACTTATCAATTATGATCCTGGTGATGAAATGCCCCCAGAAGATATCATGT]
consensusID : consensus_9224#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 558 fasta sequence
[AGAATGAAGACAATAAAAACAATAAGGGAGATAAAACACTAGATACATAAATATATGAGATGTACGAGCGAATACAATTGCGATGTAATCATGTACGCTGACAACGCTTACGTAAATATATACACACACACGCACAAGGGGGGGACAATAGACATGCATGGAGTAAAGGATTTTACTAAATTGTACCTTTTAGTGATAAATATATATGTGTATATGCACGGTATATATATACAGGTAACAGGAAGGTATTTGAAGGATTTATGAACAATATGACTCAATAAACAAAATGAAAGCCATAATGAATAAATAAATAACCAATTAAAGAACAACTTAGACTCCTAAGACTTACAAACAAATTATTAAACTTATACAAAGATGAAAACAATATAACATCTATTAATAAACAGTGTTTTATCTATAAATGAACTAAGTCATAAAGAGAGAGAATTTCAGTTTAAAGATAGGATAAATGATAATGAGAATGATAACAATTTAACTTACGATGATTTCCATGAGGGAGAATTATGATTAGTGTCGGTTAAATTGATTAAACCGCCA]
[+] EMBL CD169456 [AGAATGAAGACAATAAAAACAATAAGGGAGATAAAACACTAGATACATAAATATATGAGATGTACGAGCGAATACAATTGCGATGTAATCATGTACGCTGACAACGCTTACGTAAATATATACACACACACGCACAAGGGGGGGACAATAGACATGCATGGAGTAAAGGATTTTACTAAATTGTACCTTTTAGTGATAAATATATATGTGTATATGCACGGTATATATATACAGGTAACAGGAAGGTATTTGAAGGATTTATGAACAATATGACTCAATAAACAAAATGAAAGCCATAATGAATAAATAAATAACCAATTAAAGAACAACTTAGACTCCTAAGACTTACAAACAAATTATTAAACTTATACAAAGATGAAAACAATATAACATCTATTAATAAACAGTGTTTTATCTATAAATGAACTAAGTCATAAAGAGAGAGAATTTCAGTTTAAAGATAGGATAAATGATAATGAGAATGATAACAATTTAACTTACGATGATTTCCATGAGGGAGAATTATGATTAGTGTCGGTTAAATTGATTAAACCGCCA]
consensusID : consensus_9224#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 508 fasta sequence
[ATGAAAGACCTGATCTTAATGATGAGTCCAGATTTAATTGCTAATCCATCAAATGAGGTGATTAATGCAGTTGGAAAAATTATCAGTTGGTCTGCTGAACCAAAATCAGCTGATGTTCGACGGATGGCTTCCCGTGTTGTTATCAAATTGTTCGATTTGAATTCGACAAGTTTTTCTAACTTATTACAATCATTGCCTCGTGGAGTGCAAGATCGTGCACATGAAGTATTAAAAACCTATCAAAAGACTGCTACAGGTGGCGGTCTAATCAATTTAACCGACACTAATCATAATTCTCCCTCATGGAAATCATCATCTGTTGATCAAGATCATATGATTTTCTCACCACCAAGTAGTGGACGATATGGATCAATTAGTGGACCATATTATTCTTCACAACGTTCTCATAACTCTGCTGGTAGTGACAGTGGTCGAGTAAGCCCTGAAAGTATGAATCGTATTATTCGTGAAACAACTGATGGTCTTCAATCACTTTCCATGGGTGCGA]
[+] EMBL CD152296 [ATGAAAGACCTGATCTTAATGATGAGTCCAGATTTAATTGCTAATCCATCAAATGAGGTGATTAATGCAGTTGGAAAAATTATCAGTTGGTCTGCTGAACCAAAATCAGCTGATGTTCGACGGATGGCTTCCCGTGTTGTTATCAAATTGTTCGATTTGAATTCGACAAGTTTTTCTAACTTATTACAATCATTGCCTCGTGGAGTGCAAGATCGTGCACATGAAGTATTAAAAACCTATCAAAAGACTGCTACAGGTGGCGGTCTAATCAATTTAACCGACACTAATCATAATTCTCCCTCATGGAAATCATCATCTGTTGATCAAGATCATATGATTTTCTCACCACCAAGTAGTGGACGATATGGATCAATTAGTGGACCATATTATTCTTCACAACGTTCTCATAACTCTGCTGGTAGTGACAGTGGTCGAGTAAGCCCTGAAAGTATGAATCGTATTATTCGTGAAACAACTGATGGTCTTCAATCACTTTCCATGGGTGCGA]
[+] EMBL CD152273 [ATGAAAGACCTGATCTTAATGATGAGTCCAGATTTAATTGCTAATCCATCAAATGAGGTGATTAATGCAGTTGGAAAAATTATCAGTTGGTCTGCTGAACCAAAATCAGCTGATGTTCGACGGATGGCTTCCCGTGTTGTTATCAAATTGTTCGATTTGAATTCGACAAGTTTTTCTAACTTATTACAATCATTGCCTCGTGGAGTGCAAGATCGTGCACATGAAGTATTAAAAACCTATCAAAAGACTGCTACAGGTGGCGGTCTAATCAATTTAACCGACACTAATCATAATTCTCCCTCATGGAAATCATCATCTGTTGATCAAGATCATATGATTTTCTCACCACCAAGTAGTGGACGATATGGATCAATTAGTGGACCATATTATTCTTCACAACGTTCTCATAACTCTGCTGGTAGTGACAGTGGTCGAGTAAGCCCTGAAAGTATGAATCGTATTATCCGTGAAACAACTGATGGTCTTCAATCACTT ]
[+] EMBL CD152304 [ATGAAAGACCTGATCTTAATGATGAGTCCAGATTTAATTGCTAATCCATCAAATGAGGTGATTAATGCAGTTGGAAAAATTATCAGTTGGTCTGCTGAACCAAAATCAGCTGATGTTCGACGGATGGCTTCCCGTGTTGTTATCAAATTGTTCGATTTGAATTCGACAAGTTTTTCTAACTTATTACAATCATTGCCTCGTGGAGTGCAAGATCGTGCACATGAAGTATTAAAAACCTATCAAAAGACTGCTACAGGTGGCGGTCTAATCAATTTAACCGACACTAATCATAATTCTCCCTCATGGAAATCATCATCTGTTGATCAAGATCATATGATTTTCTCACCACCAAGTAGTGGACGATATGGATCAATTAGTGGACCATATTATTCTTCACAACGTTCTCATAACTCTGCTGGTAGTGACAGTGGTCGAGTAAGCCCTGAAAGTATGAATC ]
[+] EMBL CD152312 [ATGAAAGACCTGATCTTAATGATGAGTCCAGATTTAATTGCTAATCCATCAAATGAGGTGATTAATGCAGTTGGAAAAATTATCAGTTGGTCTGCTGAACCAAAATCAGCTGATGTTCGACGGATGGCTTCCCGTGTTGTTATCAAATTGTTCGATTTGAATTCGACAAGTTTTTCTAACTTATTACAATCATTGCCTCGTGGAGTGCAAGATCGTGCACATGAAGTATTAAAAACCTATCAAAAGACTGCTACAGGTGGCGGTCTAATCAATTTAACCGACACTAATCATAATTCTCCCTCATGGAAATCATCATCTGTTGATCAAGATCATATGATTTTCTCACCACCAAGTAGTGGACGATATGGATCAATTAGTGGACCATATTATTCTTCACAACGTTCTCATAACTCTGCTGGTAGTGACAGTGGTCGAGTAAGCCCTGAAAGTATGA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9224#0 ------------------------------------------------------------
consensus_9224#2 ATGAAAGACCTGATCTTAATGATGAGTCCAGATTTAATTGCTAATCCATCAAATGAGGTG 60
consensus_9224#1 ------------------------------------------------------------
consensus_9224#0 ------------------------------------------------------------
consensus_9224#2 ATTAATGCAGTTGGAAAAATTATCAGTTGGTCTGCTGAACCAAAATCAGCTGATGTTCGA 120
consensus_9224#1 -AGAATGAAGACAATAAAAACAATAAGGGAGATAAAACACTAGATACA-TAAATATATGA 58
consensus_9224#0 -----GGCTTCCCGTGTTGTTATCAAATTGTTCGATTTGAATTCGACAAGTTTTTCTAAC 55
consensus_9224#2 CGGATGGCTTCCCGTGTTGTTATCAAATTGTTCGATTTGAATTCGACAAGTTTTTCTAAC 180
consensus_9224#1 GATGTACGAGCGAATACAATTGCGATGTAATC--ATGTACGCTGACAACGCTTACGTAAA 116
* * ** * * * ** * * * * ** ***
consensus_9224#0 TTATTACAATCATTGCCTCGTGGAGTGCAAGATCG-TGCACATGAAGTATTAAAAACCTA 114
consensus_9224#2 TTATTACAATCATTGCCTCGTGGAGTGCAAGATCG-TGCACATGAAGTATTAAAAACCTA 239
consensus_9224#1 TATATACACACACACGCACAAGGGGGGGACAATAGACATGCATGGAGTAA-AGGATTTTA 175
* **** ** * * ** * * * ** * **** **** * * **
consensus_9224#0 TCAAAAGACTGCTACAGGTGGCGGTCTAATCAATTTAACCGACACTAATCATAATTCTCC 174
consensus_9224#2 TCAAAAGACTGCTACAGGTGGCGGTCTAATCAATTTAACCGACACTAATCATAATTCTCC 299
consensus_9224#1 CTAAATTGTACCTTTTAGTGATAAATATATATGTGTATATG-CACGGTATATATATACAG 234
*** ** *** ** * ** * *** *** *
consensus_9224#0 CTCAT-GGAAATCATCTTCAGGATCATTGAGGAAGTATTCTCTGCCTGTAACAACAGCAG 233
consensus_9224#2 CTCAT-GGAAATCATC-------------------------------------------- 314
consensus_9224#1 GTAACAGGAAGGTATTTGAAGGATTTATGAACAATATGACTCAATAAACAAAATGAAAGC 294
* * **** **
consensus_9224#0 GTCGAAGTTCTATGACTAGATCTGTTGATCAAGATCATATGATTTT----CTCACCACCA 289
consensus_9224#2 -------------------ATCTGTTGATCAAGATCATATGATTTT----CTCACCACCA 351
consensus_9224#1 CATAATGAATAAATAAATAACCAATTAAAGAACAACTTAGACTCCTAAGACTTACAAACA 354
* * ** * ** * * ** * * ** ** * **
consensus_9224#0 AGTAGTGGACGATATGGATCAATTAGTGGACCATATTATTCTTCAC--AACGTTCTCATA 347
consensus_9224#2 AGTAGTGGACGATATGGATCAATTAGTGGACCATATTATTCTTCAC--AACGTTCTCATA 409
consensus_9224#1 AATTATTAAACTTATACAAAGATGAAAACAATATAACATCTATTAATAAACAGTGTTTTA 414
* * * * *** * ** * * *** ** * * *** * * **
consensus_9224#0 ACTCTGCTGGTAGTGA-CAGTGGTCGAGTAAGCCCTGAAAGTATGAATCGTATTATTCGT 406
consensus_9224#2 ACTCTGCTGGTAGTGA-CAGTGGTCGAGTAAGCCCTGAAAGTATGAATCGTATTATTCGT 468
consensus_9224#1 TCTATAAATGAACTAAGTCATAAAGAGAGAGAATTTCAGTTTAAAGATAGGATAAATGAT 474
** * * * * * * * * * ** ** * ** * * *
consensus_9224#0 GAAACAACTGATGGTCTTCAATCACTTTCAATGGGTGCGAGTGGGGGTGGTATTCTAACT 466
consensus_9224#2 GAAACAACTGATGGTCTTCAATCACTTTCCATGGGTGCGA-------------------- 508
consensus_9224#1 AATGAGAATGATAACAATT--TAACTTACGATGATTTCCAT--GAGGGAGAATTATGATT 530
* * **** * * **** * *** * * *
consensus_9224#0 TCAGTAGGAATAACAAGTCCAACACGCAGAGTATCCGCTGATCCCAGCTTTACAACTAAC 526
consensus_9224#2 ------------------------------------------------------------
consensus_9224#1 AGTGTCGGTTAAATTGATTAAACCGCCA-------------------------------- 558
consensus_9224#0 GATTATACATATGCTACAAATGGTAATACAGGTGTATTACGTACAGTTCAACCAAATAAT 586
consensus_9224#2 ------------------------------------------------------------
consensus_9224#1 ------------------------------------------------------------
consensus_9224#0 TTCCCTAATTCACAACCAACAGCATTACAGTCACCTAATATTATTCCTTCTAATGTAAAT 646
consensus_9224#2 ------------------------------------------------------------
consensus_9224#1 ------------------------------------------------------------
consensus_9224#0 CCATCATATGCTTCCTCACAAGGTACTACTGCTTCTAATGATCCAACACTTCAGTCTACA 706
consensus_9224#2 ------------------------------------------------------------
consensus_9224#1 ------------------------------------------------------------
consensus_9224#0 TATGGTTTACGTACAAATAAGGCTCTTTTAAATACACTTATCAATTATGATCCTGGTGAT 766
consensus_9224#2 ------------------------------------------------------------
consensus_9224#1 ------------------------------------------------------------
consensus_9224#0 GAAATGCCCCCAGAAGATATCATGT 791
consensus_9224#2 -------------------------
consensus_9224#1 -------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||