cluster # 923

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Schistosoma mansoni
cluster # 923 cluster # 923 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_923#0 length = 273 sequences # 1

consensus_923#1 length = 259 sequences # 1

consensusID : consensus_923#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 273
fasta sequence

                              [GTAACTTTTTTTACCCAAGCTACGAGGTGCTCTTAAAGGACGCAAAAGTCTGCACACCCAAACATCCCACCATTACAATAGCTTTTCCCCAAATACACCTCCTGTTCCTCTATAAATTTTTGNTTCNNGNCTTTTTTTTCTTCCTATTCAAGCGGGGTGGATTAAATAGAGCATTTTCATCGGACCATCTGTGCTTGCATCCAGAAGATATATCTTCAGGCCTATCAATTTCATTCGAGGCAATCAACAAATGAAATGGGATATTTAATGAAC]

[+] EMBL CD117398             [GTAACTTTTTTTACCCAAGCTACGAGGTGCTCTTAAAGGACGCAAAAGTCTGCACACCCAAACATCCCACCATTACAATAGCTTTTCCCCAAATACACCTCCTGTTCCTCTATAAATTTTTGNTTCNNGNCTTTTTTTTCTTCCTATTCAAGCGGGGTGGATTAAATAGAGCATTTTCATCGGACCATCTGTGCTTGCATCCAGAAGATATATCTTCAGGCCTATCAATTTCATTCGAGGCAATCAACAAATGAAATGGGATATTTAATGAAC]




>consensus_923#0
GTAACTTTTTTTACCCAAGCTACGAGGTGCTCTTAAAGGACGCAAAAGTCTGCACACCCA
AACATCCCACCATTACAATAGCTTTTCCCCAAATACACCTCCTGTTCCTCTATAAATTTT
TGNTTCNNGNCTTTTTTTTCTTCCTATTCAAGCGGGGTGGATTAAATAGAGCATTTTCAT
CGGACCATCTGTGCTTGCATCCAGAAGATATATCTTCAGGCCTATCAATTTCATTCGAGG
CAATCAACAAATGAAATGGGATATTTAATGAAC

consensusID : consensus_923#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 259
fasta sequence

                              [GTAACTTTTTTTACCCAAGAACGAGGTGCTCTTAAAGGACAAAAGTCTGTGACCAAACATCCAACATTCAATAGCTTTGCCAAATCAACAACTGATTTTGCAACATACGTTTCATAAAGAAAATTTTTTTCTATTCGATCAGTTTGATTAAATAGAGCATTTTCATCGGACCATCTGTGCTTGCATCCAGAAGATATATCTTCAGGCCTATCAATTTCATTCGAGGCAATCAACAAATGAAATGGGATATTTAATGAAC]

[+] EMBL CD117764             [GTAACTTTTTTTACCCAAGAACGAGGTGCTCTTAAAGGACAAAAGTCTGTGACCAAACATCCAACATTCAATAGCTTTGCCAAATCAACAACTGATTTTGCAACATACGTTTCATAAAGAAAATTTTTTTCTATTCGATCAGTTTGATTAAATAGAGCATTTTCATCGGACCATCTGTGCTTGCATCCAGAAGATATATCTTCAGGCCTATCAATTTCATTCGAGGCAATCAACAAATGAAATGGGATATTTAATGAAC]




>consensus_923#1
GTAACTTTTTTTACCCAAGAACGAGGTGCTCTTAAAGGACAAAAGTCTGTGACCAAACAT
CCAACATTCAATAGCTTTGCCAAATCAACAACTGATTTTGCAACATACGTTTCATAAAGA
AAATTTTTTTCTATTCGATCAGTTTGATTAAATAGAGCATTTTCATCGGACCATCTGTGC
TTGCATCCAGAAGATATATCTTCAGGCCTATCAATTTCATTCGAGGCAATCAACAAATGA
AATGGGATATTTAATGAAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_923#0      GTAACTTTTTTTACCCAAGCTACGAGGTGCTCTTAAAGGACGCAAAAGTCTGCACACCCA 60
consensus_923#1      GTAACTTTTTTTACCCAAGA-ACGAGGTGCTCTTAAAGGA--CAAAAGTCTGTGA--CCA 55
                     *******************  *******************  **********     ***

consensus_923#0      AACATCCCACCATTACAATAGCTTTTCCCCAAATACACCTCCTGTTCCTCTATAAATTTT 120
consensus_923#1      AACATCC-AACATT-CAATAGCTTTGC--CAAATCAACAACTGATTTTGCAACATACGTT 111
                     ******* * **** ********** *  *****  **  *   **   * * * *  **

consensus_923#0      TGNTTCNNGNCTTTTTTTTCTTCCTATTCAAGCGGGGTGGATTAAATAGAGCATTTTCAT 180
consensus_923#1      TCATAAAGAAAATTTTTTTC----TATTCGATCAGT-TTGATTAAATAGAGCATTTTCAT 166
                     *  *        ********    ***** * * *  * *********************

consensus_923#0      CGGACCATCTGTGCTTGCATCCAGAAGATATATCTTCAGGCCTATCAATTTCATTCGAGG 240
consensus_923#1      CGGACCATCTGTGCTTGCATCCAGAAGATATATCTTCAGGCCTATCAATTTCATTCGAGG 226
                     ************************************************************

consensus_923#0      CAATCAACAAATGAAATGGGATATTTAATGAAC 273
consensus_923#1      CAATCAACAAATGAAATGGGATATTTAATGAAC 259
                     *********************************