These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9230#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 637 fasta sequence [ATTTAAAGTTGTAGTGGATAGATTACGTTTATACCGATCATTATTCGGTATGGGGATTTGATTATTCAATTGCATATAAGATTGATTTAAATATCGACCATAGTTAGAGCTTGGTACTCGTCCACATAAACTGTGTCTAGACAGATGGAAAGACAGAGTGTGAGACTTCTCCTGACGTAGATTAGTTTTATCCTGACCAGAACTTCCATCATACAAATCCCTATAGTTTGAATCGTCCAAATTGGCTGATTCACATAAACGATCTCCTAGACCAGAATCTGTGCTTAGGTATCCTCTCTCCTTGGATACATGAAGACCATTTTGTTCTGTGACAGGTTTTCGAAGAATAGATTTTGATTTTTGAGGAAGTCCAGCAGAAGGAATGCATGAAAAATCGTTTTGCGGTTGGTTCATCTCTATTGGCTGCTCATGGATATACTGTGATGATGCCATATCACTGGCACTGACACAACCTTCATCATCAGTGACAGACAAAGGTGTCTGGAGAAGGTTCTTACTAGGAACACTACCAACAGTTGCAGAACAGCATACTTGATTGATG-CAATGCGGACAATAGAATTTCTCCTGCCAAACAGTAACACGATCACCAGGACGGAATGTGATCGAACACTTATTA] [+] EMBL CD161187 [ATTTAAAGTTGTAGTGGATAGATTACGTTTATACCGATCATTATTCGGTATGGGGATTTGATTATTCAATTGCATATAAGATTGATTTAAATATCGACCATAGTTAGAGCTTGGTACTCGTCCACATAAACTGTGTCTAGACAGATGGAAAGACAGAGTGTGAGACTTCTCCTGACGTAGATTAGTTTTATCCTGACCAGAACTTCCATCATACAAATCCCTATAGTTTGAATCGTCCAAATTGGCTGATTCACATAAACGATCTCCTAGACCAGAATCTGTGCTTAGGTATCCTCTCTCCTTGGATACATGAAGACCATTTTGTTCTGTGACAGGTTTTCGAAGAATAGATTTTGATTTTTGAGGAAGTCCAGCAGAAGGAATGCATGAAAAATCGTTTTGCGGTTGGTTCATCTCTATTGGTTGCTCATGGATATACTGTGATGATGCCATATCACTGGCACTGACACAACCTTCATCATCAGTGACAGACAAAGGTGTCTGGAGAAGGTTCTTACTANGAACACTACCAACAGTTGCAGAACAGCATACTTGATTGATG CAATGCGGACAATAGACTTTCTCCTGCCAAACAGTAACACGATCACCAGGACGGAATGTGATCGAACACTTATT ] [+] EMBL CD161152 [ATTTAAAGTTGTAGTGGATAGATTACGTTTATACCGATCATTATTCGGTATGGGGATTTGATTATTCAATTGCATATAAGATTGATTTAAATATCGACCATAGTTAGAGCTTGGTACTCGTCCACATAAACTGTGTCTAGACAGATGGAAAGACAGAGTGTGAGACTTCTCCTGACGTAGATTAGTTTTATCCTGACCAGAACTTCCATCATACAAATCCCTATAGTTTGAATCGTCCAAATTGGCTGATTCACATAAACGACCTCCTAGACCAGAATCTGTGCTTAGGTATCCTCTCTCCTTGGATACATGAAGACCATTTTGTTCTGTGACAGGTTTTCGAAGAATAGATTTTGGTTTTTGAGGAAGTCCAGCAGAAGGAATGCATGAAAAATCGTTTTGCGGTTGGTTCATCTCTATTGGCTGCTCATGGATATACTGTGATGATGCCATATCACTGGCACTGACACAACCTTCATCATCAGTGACAGACAAAGGTGTCTGGAGAAGGTTCTTACTAGGAACACTACCAACAGTTGCAGAACAGCATACTTGATTGATGNNCATGCGGAC ATAGAAATTCTNCTGCC AACAGTAACACGATCACCANGACGGAATGTGATCGAACACTTATT ] [+] EMBL CD161405 [ATTTAAAGTTGTAGTGGATAGATTACGTTTATACCGATCATTATTCGGTATGGGGATTTGATTATTCAGTTGCATATAAGATTGATTTAAATATCGACCATAGTTAGAGCTTGGTACTCGTCCACATAAACTGCGTCTAGACAGATGGAAAGACAGAGTGTGAGACTTCTCCTGACGTAGATTAGTTTTATCCTGACCAGAACTTCCATCATACAAATCCCTATAGTTTGAATCGTCCAAATTGGCTGATTCACATAAACGATCTCCTAGACCAGAATCTGTGCTTAGGTATCCTCTCTCCTTGGATACATGAAGACCATTTTGTTCTGTGACAGGTTTTCGAAGAATAGATTTTGATTTTTGAGGAAGTCCAGCAGAAGGAATGCATGAAAAATCGTTTTGCGGTTGGTTCATCTCTATTGGCTGCTCATGGATATACTGTGATGATGCCATATCACTGGCACTGACACAACCTTCATCATCAGTGACAGACAAAGGTGTCTGGAGAAGGTTCTTACTANGAACACTACCAACAGTTGCAGAACAGCATACTTGATTGATG NCATGCGGACAATAGAATTTCTCCTGCCA ] [+] EMBL CD161189 [ATTTAAAGTTGTAGTGGATAGATTACGTTTATACCGATCATTATTCGGTATGGGGATTTGATTATTCAATTGCATATAAGATTGATTTAAATATCGACCATAGTTAGAGCTTGGTACTCGTCCACATAAACTGTGTCTAGACAGATGGAAAGACAGAGTGTGAGACTTCTCCTGACGTAGATTAGTTTTATCCTGACCAGAACTTCCATCATACAAATCCCTATAGTTTGAATCGTCCAAATTGGCTGATTCACATAAACGATCTCCTAGACCAGAATCTGTGCTTAGGTATCCTCTCTCCTTGGATACATGAAGACCATTTTGTTCTGTGACAGGTTTTCGAAGAATAGATTTTGATTTTTGAGGAAGTCCAGCAGAAGGAATGCATGAAAAATCGTTTTGCGGTTGGTTCATCTCTATTGGCTGCTCATGGATATACTGTGATGATGCCATATCACTGGCACTGACACAACCTTCATCATCAGTGACAGACAAAGGTGTCTGGAGAAGGTTCTTACTANGAACACTACCAACAGTTGCAGAACAGCATACTTGATTGATG CAATGCGGACAATAGAATTTCTCCTGCCAAACA ] [-] EMBL CD161336 [ TAGATTACGTTTATACCGATCATTATTCGGTATGGGGATTTGATTATTCAATGNCATATAAGATTGATTTAAATATCGACCATAGTTAGAGCTTGGTACTCGTCCACATAAACTGTGTCTAGACAGATGGAAAGACAGAGTGTGAGACTTCTCCTGACGTAGATTAGTTTTATCCTGACCAGAACTTCCATCATACAAATCCCTATAGTTTGAATCGTCCAAATTGGCTGATTCACATAAACGATCTCCTAGACCAGAATCTGTGCTTAGGTATCCTCTCTCCTTGGATACATGAAGACCATTTTGTTCTGTGACAGGTTTTCGAAGAATAGATTTTGATTTTTGAGGAAGTCCAGCAGAAGGAATGCATGAAAAATCGTTTTGCGGTTGGTTCATCTCTATTGGCTGCTCATGGATGTACTGTGATGATGCCATATCACTGGCACTGACACAACCTTCATCATCAGTGACAGACAAAGGTGTCTGGAGAAGGTTCTTACTAGGAACACTACCAACAGTTGCAGAACAGCATACTTGATTGATG CAATGCGGACAATAGAATTTCTCCTGCCAAACAGTAACACGATCACCAGGACGGAATGTGATCGAACACTTATTA] [-] EMBL CD161094 [ CGGTATGGGGATTTGATTATTCAATTGCATATAAGATTGATTTAAATATCGACCATAGTTAGAGCTTGGTACTCGTCCACATAAACTGTGTCTAGACAGATGGAAAGACAGAGTGTGAGACTTCTCCTGACGTAGATTAGTTTTATCCTGACCAGAACTTCCATCATACAAATCCCTATAGTTTGAATCGTCCAAATTGGCTGATTCACATAAACGATCTCCTAGACCAGAATCTGTGCTTAGGTATCCTCTCTCCTTGGATACATGAAGACCATTTTGTTCTGTGACAGGTTTTCGAAGAATAGATTTTGATTTTTGAGGAAGTCCAGCAGAAGGAATGCATGAAAAATCGTTTTGCGGTTGGTTCATCTCTATTGGCTGCTCATGGATATACTGTGATGATGCCATATCACTGGCACTGACACAACCTTCATCATCAGTGACAGACAAAGGTGTCTGGAGAAGGTTCTTACTAGGAACACTACCAACAGTTGCAGAACAGCATACTTGATTGATG CAATGCGGACAATAGAATTTCTCCTGCCAAACAGTAACACGATCACCAGGACGGAATGTGATCGAACACTTATTA] [+] EMBL CD190064 [ GTTTTATCCTGACCAGAACTTCCATCATACAAATCCCTATAGTTTGAATCGTCCAAATTGGCTGATTCACATAAACGATCTCCTAGACCAAAATCTGTGCTTAGGTATCCTCTCTCCTTGGATACATGAAGACCATTTTGTTCTGTGACAGGTTTTCGAAGAATAGATTTTGATTTTTGAGGAAGTCCAGCAGAAGGAATGCATGAAAAATCGTTTTGCGGTTGGTTCATCTCTATTGGCTGCTCATGGATATACTGTGATGATGCCATATCACTGGCACTGACACAACCTTCATCATCAGTGACAGACAAAGGTGTCTGGAGAAGGTTCTTACTAGGAACACTACCAACAGTTGCAGAACAGCATACTTGATTGATG CAATGCGGACAATAGAATTTCTCCTGCCAAACAGT ] [+] EMBL CD133620 [ GTTTTATCCTGACCAGAACTTCCATCATACAAATCCCTATAGTTTGAATCGTCCAAATTGGCTGATCCACATAAACGATCGCCTAGACCAGAATCTGTGCTTAGGTATCCTCTCTCCTTGGATACATGGAGACCATTTTGTTCTGTGACAGGTTTTCGAAGAATAGATTTTGATTTTTGAGGAAGTCCAGCAGAAGGAATGCATGAAAAATCGTTTTGCGGTTGGTTCATCTCTATTGGCTGCTCATGGATATACTGTGATGATGCCATATCACTGGCACTGACACAACCTTCATCATCAGTGACAGACAAAGGTGTCTGGAGAAGG ] [+] EMBL CD189056 [ GACCATTTTGTTCTGTGACAGGTTTTCGAAGAATAGATTTTGATTTTTGAGGAAGTCCAGCAGAAGGAATGCATGAAAAATCGTTTTGCGGTTGGTTCATCTCTATTGGCTGCTCATGGATATACTGTGATGATGCCATATCACTGGCACTGACACAACCTTCATCATCAGTGACAGACAAAGGTGTCTGGAGAAGGTTCTTACTAGGAACACTACCAACAGTTGCAGAACAGCATACTTGATTGATG CAATGCGGACAATAGAATTTCTCCTGCCAAACAGT ] clustalw multiple alignements is not computed in this case |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||