cluster # 9238

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Schistosoma mansoni
cluster # 9238 cluster # 9238 Sequences # 9 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9238#0 length = 643 sequences # 2

consensus_9238#1 length = 439 sequences # 5
consensus_9238#2 length = 350 sequences # 2

consensusID : consensus_9238#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 643
fasta sequence

                              [GACGACTCCATTTTGGTTGGCTCGTTGAAGTCTGTCTATTCGGTTGTCCGTTTACCAACGCTGGATCCCAATATCTCGGATTATCCGGAGAAGTTTTTGAATTTTCCACATGCAGTTGGCTTCCCTTCCAAAACTCCAATGAACAGGATGCCTTCTGCGGTTGCGAGTGGTGGGTCTCAACCTCTCCATATGCAACCAGTTCACTCAGGCCCGGTGATATCAAGTTCTCTAAATTTGCCGAACACCCTCCCACCTGGAATGCTCCATTCGGGCCATGGTATCCAAATGTCTGGTCCTCACGACCGTGAGCCTGCTACACCAGCTTCAGGTTCTGGCCCAATACCAAGCCATTATTTCTCCACTCTTGGTATGAACCCAGGTTCCCCTCATCCTATCCCAAATATGGTCCCACATGGTCATCCTAGCCAATTTCATCACCATCCACTACTATCGTTGAATCGACTACCACATCTGATAGGTCAACCAGAGCTACGGATATTTGAAATGAATAAGCGATTACAACAGCGCAGCGACGACTGTGATAGTTTGTGGTGGGAGTCATTTGCTACTGACTTTTTTGAAGATGACGCAACACTTACTCTTGCCTTTTTGACAGAAGAGGGTCCAAAAAGTTACACTATCG]

[+] EMBL CD131330             [GACGACTCCATTTTGGTTGGCTCGTTGAAGTCTGTCTATTCGGTTGTCCGTTTACCAACGCTGGATCCCAATATCTCGGATTATCCGGAGAAGTTTTTGAATTTTCCACATGCAGTTGGCTTCCCTTCCAAAACTCCAATGAACAGGATGCCTTCTGCGGTTGCGAGTGGTGGGTCTCAACCTCTCCATATGCAACCAGTTCACTCAGGCCCGGTGATATCAAGTTCTCTAAATTTGCCGAACACCCTCCCACCTGGAATGCTCCATTCGGGCCATGGTATCCAAATGTCTGGTCCTCACGACCGTGAGCCTGCTACACCAGCTTCAGGTTCTGGCCCAATACCAAGCCATTATTTCTCCACTCTTGGTATGAACCCAGGTTCCCCTCATCCTATCCCAAATATGGTCCCACATGGTCATCCTAGCCAATTTCATCACCATCCACTACTATCGTTGAATCGACTACCACATCTGATAGGTCAACCAGAGCTACGGATATTTGAAATGAATAAGCGATTACAACAGCGCAGCGACGACTGTGATAGTTTGTGGTGGGAGTCATTTGCTACTGACTTT                                                                   ]
[+] EMBL CD198540             [                                                                                                                                                                                                                                                                              GGCCATGGTATCCAAATGTCTGGTCCTCACGACCGTGAGCCTGCTACACCAGCTTCAGGTTCTGGCCCAATACCAAGCCATTATTTCTCCACTCTTGGTATGAACCCAGGTTCCCCTCATCCTATCCCAAATATGGTCCCACATGGTCATCCTAGCCAATTTCATCACCATCCACTACTATCGTTGAACCGACTACCACATCTGATAGGTCAACCAGAGCTACGGATATTTGAAATGAATAAGCGATTACAACAGCGCAGCGACGACTGTGATAGTTTGTGGTGGGAGTCATTTGCTACTGACTTTTTTGAAGATGACGCAACACTTACTCTTGCCTTTTTGACAGAAGAGGGTCCAAAAAGTTACACTATCG]




>consensus_9238#0
GACGACTCCATTTTGGTTGGCTCGTTGAAGTCTGTCTATTCGGTTGTCCGTTTACCAACG
CTGGATCCCAATATCTCGGATTATCCGGAGAAGTTTTTGAATTTTCCACATGCAGTTGGC
TTCCCTTCCAAAACTCCAATGAACAGGATGCCTTCTGCGGTTGCGAGTGGTGGGTCTCAA
CCTCTCCATATGCAACCAGTTCACTCAGGCCCGGTGATATCAAGTTCTCTAAATTTGCCG
AACACCCTCCCACCTGGAATGCTCCATTCGGGCCATGGTATCCAAATGTCTGGTCCTCAC
GACCGTGAGCCTGCTACACCAGCTTCAGGTTCTGGCCCAATACCAAGCCATTATTTCTCC
ACTCTTGGTATGAACCCAGGTTCCCCTCATCCTATCCCAAATATGGTCCCACATGGTCAT
CCTAGCCAATTTCATCACCATCCACTACTATCGTTGAATCGACTACCACATCTGATAGGT
CAACCAGAGCTACGGATATTTGAAATGAATAAGCGATTACAACAGCGCAGCGACGACTGT
GATAGTTTGTGGTGGGAGTCATTTGCTACTGACTTTTTTGAAGATGACGCAACACTTACT
CTTGCCTTTTTGACAGAAGAGGGTCCAAAAAGTTACACTATCG

consensusID : consensus_9238#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 439
fasta sequence

                              [GGCCATGGTATCCAAATGTCTGGTCCTCACGACCGTGAGCCTGCTACACCAGCTTCAGGTTCTGGCCCAATACCAAGCCATTATTTCTCCACTCTTGGTATGAACCCAGGTTCCCCTCATCCTATCCCAAATATGGTCCCACATGGTCATCCTAGCCAATTTCATCACCATCCACTACTATCGTTGAATCGACTACCACATCTGATAGGTCAACCAGAGCTACGGATATTTGAAATGAATAAGCGATTACAACAGCGCAGCGACGTATGTCTGTACATGTTTTCCAAGACACTAACCTATTTTTAGGACTGTGATAGTTTGTGGTGGGAGTCATTTGCCACTGACTTTTTTGAAGATGACGCAACACTTACTCTTGCCTTTTTGACAGAAGAGGGTCCAAAAAGTTACAGTAAGCCTATCTTATGTCACATTTCTCTTT]

[+] EMBL CD198636             [GGCCATGGTATCCAAATGTCTGGTCCTCACGACCGTGAGCCTGCTACACCAGCTTCAGGTTCTGGCCCAATACCAAGCCATTATTTCTCCACTCTTGGTATGAACCCAGGTTCCCCTCATCCTATCCCAAATATGGTCCCACATGGTCATCCTAGCCAATTTCATCACCATCCACTACTATCGTTGAATCGACTACCACATCTGATAGGTCAACCAGAGCTACGGATATTTGAAATGAATAAGCGATTACAACAGCGCAGCGACGTATGTCTGTACATGTTTTCCAAGACACTAACCTATTTTTAGGACTGTGATAGTTTGTGGTGGGAGTCATTTGCCACTGACTTTTTTGAAGATGACGCAACACTTACTCTTGCCTTTTTGACAGAAGAGGGTCCAAAAAGTTACAGTAAGCCTATCTTATGTCACATTTCTCTTT]
[-] EMBL CD142392             [ GCCATGGTATCCAAATGTCTGGTCCTCACGACCGTGAGCCTGCTACACCAGCTTCAGGTTCTGGCCCAATACCAAGCCATTATTTCTCCACTCTTGGTATGAACCCAGGTTCCCCTC                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CD142432             [ GCCATGGTATCCAAATGTCTGGTCCTCACGACCGTGAGCCTGCTACACCAGCTTCAGGTTCTGGCCCAATACCAAGCCATTATTGCTCCACTCTTGGTATGAACCCAGGTTCCCCTC                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CD198497             [ GCCATGGTATCCAAATGTCTGGTCCTCACGACCGTGAGCCTGCTACACCAGCTTCAGGTTCTGGCCCAATACCAAGCCATTATTTCTCCACTCTTGGTATGAACCCA                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CD199999             [                                                                                                                                                                                                                             ACGGATATTTGAAATGAATAAGCGATTACGACAGCGCAGCGACGTATGTCTGTACATGTTTTCCAAGACACTAACCTATTTTTAGGACTGTGATAGTTTGTGGTGGGAGTCATTTGCTACTGACTTTTTTGAAGATGACGCAACACTTACTCT                                                                 ]




>consensus_9238#1
GGCCATGGTATCCAAATGTCTGGTCCTCACGACCGTGAGCCTGCTACACCAGCTTCAGGT
TCTGGCCCAATACCAAGCCATTATTTCTCCACTCTTGGTATGAACCCAGGTTCCCCTCAT
CCTATCCCAAATATGGTCCCACATGGTCATCCTAGCCAATTTCATCACCATCCACTACTA
TCGTTGAATCGACTACCACATCTGATAGGTCAACCAGAGCTACGGATATTTGAAATGAAT
AAGCGATTACAACAGCGCAGCGACGTATGTCTGTACATGTTTTCCAAGACACTAACCTAT
TTTTAGGACTGTGATAGTTTGTGGTGGGAGTCATTTGCCACTGACTTTTTTGAAGATGAC
GCAACACTTACTCTTGCCTTTTTGACAGAAGAGGGTCCAAAAAGTTACAGTAAGCCTATC
TTATGTCACATTTCTCTTT

consensusID : consensus_9238#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 350
fasta sequence

                              [GCAACACTTACTCTTGCCTTTTTGACAGAAGAGGGTCCAAAAAGTTACACTATCGGGCGGACGCTCATTCCCCGTTATTTTCGTAGTATATTTGAAAGTGGATGCGGTGAGCTTTATTACAACCTTAGATTGAACCATGAATATTTTCATCATCCTAGCCAATTTCATCACCATCCACTACTATCGTTGAATCGACTACCACATCTGATAGGTCAACCAGAGCTACGGATATTTGAAATGAATAAGCGATTACAACAGCGCAGCGACGACTGTGATAGTTTGTGGTGGGAGTCATTTGCTACTGACTTTTTTGAAGATGACGCAACACTTACTCTTGCCTTTTTGACAGA]

[+] EMBL CD133729             [GCAACACTTACTCTTGCCTTTTTGACAGAAGAGGGTCCAAAAAGTTACACTATCGGGCGGACGCTCATTCCCCGTTATTTTCGTAGTATATTTGAAAGTGGATGCGGTGAGCTTTATTACAACCTTAGATTGAACCATGAATATTTTCATCATCCTAGCCAATTTCATCACCATCCACTACTATCGTTGAATCGACTACCACATCTGATAGGTCAACCAGAGCTACGGATATTTGAAATGAATAAGCGATTACAACAGCGCAGCGACGACTGTGATAGTTTGTGGTGGGAGTCATTTGCTACTGACTTTTTTGAAGATGACGCAACACTTACTCTTGCCTTTTTGACAGA]
[+] EMBL CD185532             [GCAACACTTACTCTTGCCTTTTTGACAGAAGAGGGTCCAAAAAGTTACACTATCGGGCGGACGCTCATTCCCCGTTATTTTCGTAGTATATTTGAAAGTGGATGCGGTGAGCTTTATTACAACCTTAGATTGAACCATGAATATTTTCATCATCCTAGCCAATTTCATCACCATCCACTACTATCGTTGAATCGACTACCACATCTGATAGGTCAACCAGAGCTACGGATATTTGAAATGAATAAGCGATTACAACAGCGCAGCGACGACTGTGATAGTTTGTGGTGGGAGTCATTTGCTACTGACTTTTTTGAAGATGACGCAACACTTACTCTTGCCTTTTTGACAG ]




>consensus_9238#2
GCAACACTTACTCTTGCCTTTTTGACAGAAGAGGGTCCAAAAAGTTACACTATCGGGCGG
ACGCTCATTCCCCGTTATTTTCGTAGTATATTTGAAAGTGGATGCGGTGAGCTTTATTAC
AACCTTAGATTGAACCATGAATATTTTCATCATCCTAGCCAATTTCATCACCATCCACTA
CTATCGTTGAATCGACTACCACATCTGATAGGTCAACCAGAGCTACGGATATTTGAAATG
AATAAGCGATTACAACAGCGCAGCGACGACTGTGATAGTTTGTGGTGGGAGTCATTTGCT
ACTGACTTTTTTGAAGATGACGCAACACTTACTCTTGCCTTTTTGACAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9238#0      GACGACTCCATTTTGGTTGGCTCGTTGAAGTCTGTCTATTCGGTTGTCCGTTTACCAACG 60
consensus_9238#1      ------------------------------------------------------------
consensus_9238#2      ------------------------------------------------------------
                                                                                  

consensus_9238#0      CTGGATCCCAATATCTCGGATTATCCGGAGAAGTTTTTGAATTTTCCACATGCAGTTGGC 120
consensus_9238#1      ------------------------------------------------------------
consensus_9238#2      ------------------------------------------------------------
                                                                                  

consensus_9238#0      TTCCCTTCCAAAACTCCAATGAACAGGATGCCTTCTGCGGTTGCGAGTGGTGGGTCTCAA 180
consensus_9238#1      ------------------------------------------------------------
consensus_9238#2      ------------------------------------------------------------
                                                                                  

consensus_9238#0      CCTCTCCATATGCAACCAGTTCACTCAGGCCCGGTGATATCAAGTTCTCTAAATTTGCCG 240
consensus_9238#1      ------------------------------------------------------------
consensus_9238#2      ------------------------------------------------------------
                                                                                  

consensus_9238#0      AACACCCTCCCACCTGGAATGCTCCATTCGGGCCATGGTATCCAAATGTCTGGTCCTCAC 300
consensus_9238#1      ------------------------------GGCCATGGTATCCAAATGTCTGGTCCTCAC 30
consensus_9238#2      ----------------------------------GCAACACTTACTCTTGCCTTTTTGAC 26
                                                             *   *    *    *  * **

consensus_9238#0      GACCGTGAGCCTGCTACACCAGCTTCAGGTTCTGGC-CCAATACCAAGCCATTATTTCTC 359
consensus_9238#1      GACCGTGAGCCTGCTACACCAGCTTCAGGTTCTGGC-CCAATACCAAGCCATTATTTCTC 89
consensus_9238#2      AGAAGAGGGTCCAAAAAGTTACACTATCGGGCGGACGCTCATTCCCCGTTATTTTCGTAG 86
                          * * * *    *    *   *   *  * * * *  ** **  *  *** *     

consensus_9238#0      CACTCTTGGTA-TGAACCCAGGTTCCCCTCATCCTATCCCAAATATGGTCCCACATG--- 415
consensus_9238#1      CACTCTTGGTA-TGAACCCAGGTTCCCCTCATCCTATCCCAAATATGGTCCCACATG--- 145
consensus_9238#2      TATATTTGAAAGTGGATGCGGTGAGCTTTATTACAACCTTAGATTGAACCATGAATATTT 146
                       *   ***  * ** *  * *    *  *  * * * *  * **     *    **    

consensus_9238#0      --GTCATCCTAGCCAATTTCATCACCATCCACTACTATCGTTGAATCGACTACCACATCT 473
consensus_9238#1      --GTCATCCTAGCCAATTTCATCACCATCCACTACTATCGTTGAATCGACTACCACATCT 203
consensus_9238#2      TCATCATCCTAGCCAATTTCATCACCATCCACTACTATCGTTGAATCGACTACCACATCT 206
                         *********************************************************

consensus_9238#0      GATAGGTCAACCAGAGCTACGGATATTTGAAATGAATAAGCGATTACAACAGCGCAGCGA 533
consensus_9238#1      GATAGGTCAACCAGAGCTACGGATATTTGAAATGAATAAGCGATTACAACAGCGCAGCGA 263
consensus_9238#2      GATAGGTCAACCAGAGCTACGGATATTTGAAATGAATAAGCGATTACAACAGCGCAGCGA 266
                      ************************************************************

consensus_9238#0      CG------------------------------------------ACTGTGATAGTTTGTG 551
consensus_9238#1      CGTATGTCTGTACATGTTTTCCAAGACACTAACCTATTTTTAGGACTGTGATAGTTTGTG 323
consensus_9238#2      CG------------------------------------------ACTGTGATAGTTTGTG 284
                      **                                          ****************

consensus_9238#0      GTGGGAGTCATTTGCTACTGACTTTTTTGAAGATGACGCAACACTTACTCTTGCCTTTTT 611
consensus_9238#1      GTGGGAGTCATTTGCCACTGACTTTTTTGAAGATGACGCAACACTTACTCTTGCCTTTTT 383
consensus_9238#2      GTGGGAGTCATTTGCTACTGACTTTTTTGAAGATGACGCAACACTTACTCTTGCCTTTTT 344
                      *************** ********************************************

consensus_9238#0      GACAGAAGAGGGTCCAAAAAGTTACACTATCG------------------------ 643
consensus_9238#1      GACAGAAGAGGGTCCAAAAAGTTACAGTAAGCCTATCTTATGTCACATTTCTCTTT 439
consensus_9238#2      GACAGA-------------------------------------------------- 350
                      ******