These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9240#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1212 fasta sequence [TTTCTACCTATTTTGTTGCCACTCACAAAAGAACTTTTATTTTCTCCTCAGTGGGAGCTTAAAGAGTCTGGTATTTTGGTCCTTGGTGCTATTGCAGAAGGTTAGTTCATTATAGTAAATGACTTCGTTAAGGTTGTATGAAGGGAATGATTCCATACCTTCCAGAGTTATGTCCGTTCCTCATTGGTTGTCTGTCGGATGATAGGCCTCTCATACGTAGTATAACTTGTTGGACATTAAGCCGGTATTCTCATTGGATCGTCGGACAACCTCATGAGCAATACTTCAAACCTTTGATGGTTGAGCTCCTCAAAAGAATTTTGGATTGCAACAAACGTGTTCAGGAGGCAGCCTGTTCTGCTTTCGCTACCCTAGAAGAAGAAGCTTGTACAGATCTCGTCCCATATCTGGACCTCATCTTACGAACTCTCGTGTATGCACTTAAGCAATATCAACACAAAAACTTGTTTATTTTGTATGATGCTATAGGTACACTTGCAGATTCTGTTGGTCATCATCTCAACCGACCGGATTTCATAGAGATGCTTATGCCGCCGCTTTTTGAGAAGTGGAACGTTTTACGAGATGACGAAAAAGACTTATTCCCCCTTCTGGAATGCCTTTCTAGCATGGCTACTGCTTTAGGAACAGGTTTCCTACCTTACTGCGCTCCTGTGTTTAGTCGGTGTGTTAATNTAATTGATAGAACAATACAACTCAGCAAGCTACATGCTCAACAACCAGAAGTATATGAACCACCAGACAAAGACTTTATGGTGATTTCTCTGGATCTCCTAAGTGGTCTTATGGAAGGTCTTGGATCTCAGATGGAACATTTAGTATCAAGTAGCCCTTTGGTAAAGTTACTGTGTGAAGCAGCTCAAGACGTCCAACCAGACGTCCGCCAGAGTAGTTTTGCTCTCTTGGGTGACTTAACAAAGGCATGCTTTGCCTACATCCAGCCTCAGATTGGTCAGTTTATGACGATTTTGGCTAATAATCTCAGTTCTGAGCATATATCTGTTAGTAACAATGCTATTTGGGCAATCGGAGAAATTTGTATTCAATTGGGTGAAGGGATGACACCGTTCGCTTCTTTGTTCATTCATCCCTTGATAGAAATTATCAATCGTCAAAGTACACCTAAGACACTCCACGAAAATACTGCGATAACTATTGGACGTCTTGGTTTTGTTTGTCCTGGTGAATTGG] [-] EMBL CD114779 [TTTCTACCTATTTTGTTGCCACTCACAAAAGAACTTTTATTTTCTCCTCAGTGGGAGCTTAAAGAGTCTGGTATTTTGGTCCTTGGTGCTATTGCAGAAGGTTAGTTCATTATAGTAAATGACTTCGTTAAGGTTGTATGAAGGGAATGATTCCATACCTTCCAGAGTTATGTCCGTTCCTCATTGGTTGTCTGTCGGATGATAGGCCTCTCATACGTAGTATAACTTGTTGGACATTAAGCCGGTATTCTCATTGGATCGTCGGACAACCTCATGAGCAATACTTCAAACCTTTGATGGTTGAGCTCCTCAAAAGAATTTTGGATTGCAACAAACGTGTTCAGGAGGCAGCCTGTTCTGCTTTCGCTACCCTAGAAGAAGAAGCTTGTACAGATCTCGTCCCATATCTGGACCTCATCTTACGAA ] [-] EMBL CD113641 [ AAGCTTGTACAGATCTCGTCCCATATCTGGACCTCATCTTACGAACTCTCGTGTATGCACTTAAGCAATATCAACACAAAAACTTGTTTATTTTGTATGATGCTATAGGTACACTTGCAGATTCTGTTGGTCATCATCTCAACCGACCGGATTTCATAGAGATGCTTATGCCGCCGCTTTTTGAGAAGTGGAACGTTTTACGAGATGACGAAAAAGACTTATTCCCCCTTCTGGAATGCCTTTCTAGCATGGCTACTGCTTTAGGAACAGGTTTCCTACCTT ] [-] EMBL CD192284 [ AAAACTTGTTTATTTTGTATGATGCTATAGGTACACTTGCAGATTCTGTTGGTCATCATCTCAACCGACCGGATTTCATAGAGATGCTTATGCCGCCGCTTTTTGAGAAGTGGAACGTTTTACGAGATGACGAAAAAGACTTATTCCCCCTTCTGGAATGCCTTTCTAGCATGGCTACTGCTTTAGGAACAGGTTTCCTACCTTACTGCGCTCCTGTGTTTAGTCGGT ] [-] EMBL CD120942 [ TACTGCTNTAGGAACAGGTTTCCTACCTTACTGCGCTCCTGTGTTTAGTCGGTGTGTTAATNTAATTGATAGAACAATACAACTCAGCAAGCTACATGCTCAACAACCAGAAGTATATGAACCACCAGACAAAGACTTTATGGTGATTTCTCTGGATCTCCTAAGTGGTCTTATGGAAGGTCTTGGATCTCAGATGGAACATTTAGTATCAAGTAGCCCTTTGGTAAAGTTACTGTGTGAAGCAGCTCAAGACGTCCAACCAGACGTCCGCCAGAGTAGTTTTGCTCTCTTGGGTGACTTAACAAAGGCATGCTTTGCCTACATCCAGCCTCAGATTGGTCAGTTTATGACGATTTTGGCTAATAATCTCAGTTCTGAGCATATATCTGTTAGTAACAATGCTATTTGGGCAATCGGAGAAATTTGTATTCAATTGGGTGAAGGGATGACACCGTTCGCTTCTTTGTTCATTCATCCCTTGATAGAAATTATCAATCGTCAAAGTACACCTAAGACACTCCACGAAAATACTGCGATAACTATTGGACGTCTTGGTTTTGTTTGTCCTGGTGAATTGG] [+] EMBL SMW819 [ TGGTGATTTCTCTGGATCTCCTAAGTGGTCTTATGGAAGGTCTTGGATCTCAGATGGAACATTTAGTATCAAGTAGCCCTTTGGTAAAGTTACTGTGTGAAGCAGCTCAAGACGTCCAACCAGACGTCCGCCAGAGTAGTTTTGCTCTCTTGGGTGACTTAACAAAGGCATGCTTTGCCTACATCCAGCCTCAGATTGGTCAGTTTATGACAATTTTGGCTAATAATCTCAGTTCTGAGCATATATCTGTTAGTAACAATGCTATTTGGGCAATCGGAGAAATTTGTATTCAATTGGGTGAAGGGATGACACCGTTCGCTTCTTTGTTCATTCATCCCTTGATAGAAATTATCAATCGNCAAAGTAC ] consensusID : consensus_9240#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 681 fasta sequence [CATGTGAATTCTGGCTTTCGCTTTCTGAGCAACCCGTGTGCCACCAAGCTCTGTCGCCGTATATTGGGCGACTTATCCCAGTCTTAGTTTGTGGAATGAAGTATTCTGAAAGTGACATGGTGTTACTTCGAAATGATTTAGAAGAAGATGCTCATCTGCCTGACAAGGAATGCGATATTCGCCCGCGGTTTCATAAGACAAAAAACAAACTTTTCTCTCCAGAGGACGATGACGAAGATGAAGACGACGATTATGTTTCCAACTGGACTCTCAGAAAATGTTCTGCTGCTGCCCTTGATGTGTTGGCTAGTGTGTTCCACACAGATTTTCTACCTATTTTGTTGCCACTCACAAAAGAACTTTTATTTTCTCCTCAGTGGGAGCTTAAAGAGTCTGGTATTTTGGTCCTTGGTGCTATTGCAGAAGGTTGTATGAAGGGAATGATTCCATACCTTCCAGAGTTATGTCCGTTCCTCATTGGTTGTCTGTCGGATGATAGGCCTCTCATACGTAGTATAACTTGGTGGACATTAAGCCGGTATTCTCATTGGATCGTCGGACAACCTCATNGAGC-ATACTTCANACCTTTGATGGTTGAGCTCCTCAAAAGAATTTTGGATTGCAACAAACGTGTTCAGGAGGCAGCCTGTTCTGCTTTCGCTACCCTAGAAGAAGAAGCTT] [+] EMBL CD156738 [CATGTGAATTCTGGCTTTCGCTTTCTGAGCAACCCGTGTGCCACCAAGCTCTGTCGCCGTATATTGGGCGACTTATCCCAGTCTTAGTTTGTGGAATGAAGTATTCTGAAAGTGACATGGTGTTACTTCGAAATGATTTAGAAGAAGATGCTCATCTGCCTGACAAGGAATGCGATATTCGCCCGCGGTTTCATAAGACAAAAAACAAACTTTTCTCTCCAGAGGACGATGACGAAGATGAAGACGACGATTATGTTTCCAACTGGACTCTCAGAAAATGTTCTGCTGCTGCCCTTGATGTGTTGGCTAGTGTGTTCCACACAGATTTTCTACCTATTTTGTTGCCACTCACAAAAGAACTTTTATTTTCTCCTCAGTGGGAGCTTAAAGAGTCTGGTATTTTGGTCCTTGGTGCTATTGCAGAAGGTTGTATGAAGGGAATGATTCCATACCTTCCACAGTTATGTCCGTTCCTCATTGGTTGTCTGTCGGATGATAGGCCTCTCATACGTAGTATAACTTGGTGGACATTAAGCCGGTATTCTCATTGGATCGTCGGACAACCTCATNGAGC ATACTTCANACCTTTGATGGTTG ] [+] EMBL CD142627 [ CTGCTGCTGCCCTTGATGTGTTGGCTAGTGTGTTCCACACAGATTTTCTACCTATTTTGTTGCCACTCACAAAAGAACTTTTATTTTCTCCTCAGTGGGAGCTTAAAGAGTCTGGTATTTTGGTCCTTGGTGCTATTGCAGAAGGTTGTATGAAGGGAATGATTCCATACCTTCCAGAGTTATGTCCGTTCCTCATTGGTTGTCTGTCGGATGATAGGCCTCTCATACGTAGTATAACTTTGTGGACATT ] [-] EMBL CD180388 [ AGTGTGTTCCACACAGATTTTCTACCTATTTTGTTGCCACTCACAAAAGAACTTTTATTTTCTCCTCAGTGGGAGCTTAAAGAGTCTGGTATTTTGGTCCTTGGTGCTATTGCAGAAGGTTGTATGAAGGGAATGATTCCATACCTTCCAGAGTTATGTCCGTTCCTCATTGGTTGTCTGTCGGATGATAGGCCTCTCATACGTAGTATAACTTGTTGGACATTAAGCCGGTATTCTCATTGGATCGTCGGACAACCTCAT GAGCAATACTTCAAACCTTTGATGGTTGAGCTCCTCAAAAGAATTTTGGATTGCAACAAACGTGTTCAGGAGGCAGCCTGTTCTGCTTTCGCTACCCTAGAAGAAGAAGCTT] consensusID : consensus_9240#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 573 fasta sequence [TGTGTTGGCTAGTGTGTTCCACACAGATTTTCTACCTATTTTGTTGCCACTCACAAAAGAACTTTTATTTTCTCCTCAGTGGGAGCTTAAAGAGTCTGGTATTTTGGTCCTTGGTGCTATTGCAGAAGGTTAGTTCATTATAGTAAATGACTTCGTTAAGGTTGTATGAAGGGAATGATTCCATACCTTCCAGAGTTATGTCCGTTCCTCATTGGTTGTCTGTCGGATGATAGGCCTCTCATACGTAGTATAACTTGTAGGACATTAAGCCGGTATTCTCATTGGATCGTCGGACAACCTCATGAGCAATACTTCAAACCTTTGATGGTTGAGGTAAGTCAACCTTTAGACTTAATTGTTGTAGCTCCTCAAAAGAATTTTGGATTGCAACAAACGTGTTCAGGAGGCAGCCTGTTCTGCTTTCGCTACCCTAGAAGAAGAAGCTTGTACAGATCTCGTCCCATATCTGGACCTCATCTTACGAACTCTCGTGTATGCACTTAAGCAATATCAACACAAAAACTTGTTTATTTTGTATGATGCTATAGGTACACTTGCAGATTCTGTTGGTCA] [+] EMBL CD066061 [TGTGTTGGCTAGTGTGTTCCACACAGATTTTCTACCTATTTTGTTGCCACTCACAAAAGAACTTTTATTTTCTCCTCAGTGGGAGCTTAAAGAGTCTGGTATTTTGGTCCTTGGTGCTATTGCAGAAGGTTAGTTCATTATAGTAAATGACTTCGTTAAGGTTGTATGAAGGGAATGATTCCATACCTTCCAGAGTTATGTCCGTTCCTCATTGGTTGTCTGTCGGATGATAGGCCTCTCATACGTAGTATAACTTGTAGGACATTAAGCCGGTATTCTCATTGGATCGTCGGACAACCTCATGAGCAATACTTCAAACCTTTGATGGTTGAGGTAAGTCAACCTTTAGACTTAATTGTTGTAGCTCCTCAAAAGAATTTTGGATTGCAACAAACGTGTTCAGGAGGCAGCCTGTTCTGCTTTCGCTACCCTAGAAGAAGAAGCTTGTACAGATCTCGTCCCATATCTGGACCTCATCTTACGAACTCTCGTGTATGCACTTAAGCAATATCAACACAAAAACTTGTTTATTTTGTATGATGCTATAGGTACACTTGCAGATTCTGTTGGTCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9240#0 ------------------------------------------------------------ consensus_9240#2 ------------------------------------------------------------ consensus_9240#1 CATGTGAATTCTGGCTTTCGCTTTCTGAGCAACCCGTGTGCCACCAAGCTCTGTCGCCGT 60 consensus_9240#0 ------------------------------------------------------------ consensus_9240#2 ------------------------------------------------------------ consensus_9240#1 ATATTGGGCGACTTATCCCAGTCTTAGTTTGTGGAATGAAGTATTCTGAAAGTGACATGG 120 consensus_9240#0 ------------------------------------------------------------ consensus_9240#2 ------------------------------------------------------------ consensus_9240#1 TGTTACTTCGAAATGATTTAGAAGAAGATGCTCATCTGCCTGACAAGGAATGCGATATTC 180 consensus_9240#0 ------------------------------------------------------------ consensus_9240#2 ------------------------------------------------------------ consensus_9240#1 GCCCGCGGTTTCATAAGACAAAAAACAAACTTTTCTCTCCAGAGGACGATGACGAAGATG 240 consensus_9240#0 ------------------------------------------------------------ consensus_9240#2 ----------------------------------------------------------TG 2 consensus_9240#1 AAGACGACGATTATGTTTCCAACTGGACTCTCAGAAAATGTTCTGCTGCTGCCCTTGATG 300 consensus_9240#0 --------------------------TTTCTACCTATTTTGTTGCCACTCACAAAAGAAC 34 consensus_9240#2 TGTTGGCTAGTGTGTTCCACACAGATTTTCTACCTATTTTGTTGCCACTCACAAAAGAAC 62 consensus_9240#1 TGTTGGCTAGTGTGTTCCACACAGATTTTCTACCTATTTTGTTGCCACTCACAAAAGAAC 360 ********************************** consensus_9240#0 TTTTATTTTCTCCTCAGTGGGAGCTTAAAGAGTCTGGTATTTTGGTCCTTGGTGCTATTG 94 consensus_9240#2 TTTTATTTTCTCCTCAGTGGGAGCTTAAAGAGTCTGGTATTTTGGTCCTTGGTGCTATTG 122 consensus_9240#1 TTTTATTTTCTCCTCAGTGGGAGCTTAAAGAGTCTGGTATTTTGGTCCTTGGTGCTATTG 420 ************************************************************ consensus_9240#0 CAGAAGGTTAGTTCATTATAGTAAATGACTTCGTTAAGGTTGTATGAAGGGAATGATTCC 154 consensus_9240#2 CAGAAGGTTAGTTCATTATAGTAAATGACTTCGTTAAGGTTGTATGAAGGGAATGATTCC 182 consensus_9240#1 CAGA--------------------------------AGGTTGTATGAAGGGAATGATTCC 448 **** ************************ consensus_9240#0 ATACCTTCCAGAGTTATGTCCGTTCCTCATTGGTTGTCTGTCGGATGATAGGCCTCTCAT 214 consensus_9240#2 ATACCTTCCAGAGTTATGTCCGTTCCTCATTGGTTGTCTGTCGGATGATAGGCCTCTCAT 242 consensus_9240#1 ATACCTTCCAGAGTTATGTCCGTTCCTCATTGGTTGTCTGTCGGATGATAGGCCTCTCAT 508 ************************************************************ consensus_9240#0 ACGTAGTATAACTTGTTGGACATTAAGCCGGTATTCTCATTGGATCGTCGGACAACCTCA 274 consensus_9240#2 ACGTAGTATAACTTGTAGGACATTAAGCCGGTATTCTCATTGGATCGTCGGACAACCTCA 302 consensus_9240#1 ACGTAGTATAACTTGGTGGACATTAAGCCGGTATTCTCATTGGATCGTCGGACAACCTCA 568 *************** ******************************************* consensus_9240#0 TGAGCAATACTTCAAACCTTTGATGGTTGAG----------------------------- 305 consensus_9240#2 TGAGCAATACTTCAAACCTTTGATGGTTGAGGTAAGTCAACCTTTAGACTTAATTGTTGT 362 consensus_9240#1 TNGAGCATACTTCANACCTTTGATGGTTGAG----------------------------- 599 * ******** **************** consensus_9240#0 --CTCCTCAAAAGAATTTTGGATTGCAACAAACGTGTTCAGGAGGCAGCCTGTTCTGCTT 363 consensus_9240#2 AGCTCCTCAAAAGAATTTTGGATTGCAACAAACGTGTTCAGGAGGCAGCCTGTTCTGCTT 422 consensus_9240#1 --CTCCTCAAAAGAATTTTGGATTGCAACAAACGTGTTCAGGAGGCAGCCTGTTCTGCTT 657 ********************************************************** consensus_9240#0 TCGCTACCCTAGAAGAAGAAGCTTGTACAGATCTCGTCCCATATCTGGACCTCATCTTAC 423 consensus_9240#2 TCGCTACCCTAGAAGAAGAAGCTTGTACAGATCTCGTCCCATATCTGGACCTCATCTTAC 482 consensus_9240#1 TCGCTACCCTAGAAGAAGAAGCTT------------------------------------ 681 ************************ consensus_9240#0 GAACTCTCGTGTATGCACTTAAGCAATATCAACACAAAAACTTGTTTATTTTGTATGATG 483 consensus_9240#2 GAACTCTCGTGTATGCACTTAAGCAATATCAACACAAAAACTTGTTTATTTTGTATGATG 542 consensus_9240#1 ------------------------------------------------------------ consensus_9240#0 CTATAGGTACACTTGCAGATTCTGTTGGTCATCATCTCAACCGACCGGATTTCATAGAGA 543 consensus_9240#2 CTATAGGTACACTTGCAGATTCTGTTGGTCA----------------------------- 573 consensus_9240#1 ------------------------------------------------------------ consensus_9240#0 TGCTTATGCCGCCGCTTTTTGAGAAGTGGAACGTTTTACGAGATGACGAAAAAGACTTAT 603 consensus_9240#2 ------------------------------------------------------------ consensus_9240#1 ------------------------------------------------------------ consensus_9240#0 TCCCCCTTCTGGAATGCCTTTCTAGCATGGCTACTGCTTTAGGAACAGGTTTCCTACCTT 663 consensus_9240#2 ------------------------------------------------------------ consensus_9240#1 ------------------------------------------------------------ consensus_9240#0 ACTGCGCTCCTGTGTTTAGTCGGTGTGTTAATNTAATTGATAGAACAATACAACTCAGCA 723 consensus_9240#2 ------------------------------------------------------------ consensus_9240#1 ------------------------------------------------------------ consensus_9240#0 AGCTACATGCTCAACAACCAGAAGTATATGAACCACCAGACAAAGACTTTATGGTGATTT 783 consensus_9240#2 ------------------------------------------------------------ consensus_9240#1 ------------------------------------------------------------ consensus_9240#0 CTCTGGATCTCCTAAGTGGTCTTATGGAAGGTCTTGGATCTCAGATGGAACATTTAGTAT 843 consensus_9240#2 ------------------------------------------------------------ consensus_9240#1 ------------------------------------------------------------ consensus_9240#0 CAAGTAGCCCTTTGGTAAAGTTACTGTGTGAAGCAGCTCAAGACGTCCAACCAGACGTCC 903 consensus_9240#2 ------------------------------------------------------------ consensus_9240#1 ------------------------------------------------------------ consensus_9240#0 GCCAGAGTAGTTTTGCTCTCTTGGGTGACTTAACAAAGGCATGCTTTGCCTACATCCAGC 963 consensus_9240#2 ------------------------------------------------------------ consensus_9240#1 ------------------------------------------------------------ consensus_9240#0 CTCAGATTGGTCAGTTTATGACGATTTTGGCTAATAATCTCAGTTCTGAGCATATATCTG 1023 consensus_9240#2 ------------------------------------------------------------ consensus_9240#1 ------------------------------------------------------------ consensus_9240#0 TTAGTAACAATGCTATTTGGGCAATCGGAGAAATTTGTATTCAATTGGGTGAAGGGATGA 1083 consensus_9240#2 ------------------------------------------------------------ consensus_9240#1 ------------------------------------------------------------ consensus_9240#0 CACCGTTCGCTTCTTTGTTCATTCATCCCTTGATAGAAATTATCAATCGTCAAAGTACAC 1143 consensus_9240#2 ------------------------------------------------------------ consensus_9240#1 ------------------------------------------------------------ consensus_9240#0 CTAAGACACTCCACGAAAATACTGCGATAACTATTGGACGTCTTGGTTTTGTTTGTCCTG 1203 consensus_9240#2 ------------------------------------------------------------ consensus_9240#1 ------------------------------------------------------------ consensus_9240#0 GTGAATTGG 1212 consensus_9240#2 --------- consensus_9240#1 --------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||