cluster # 9256

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Schistosoma mansoni
cluster # 9256 cluster # 9256 Sequences # 9 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9256#0 length = 506 sequences # 7

consensus_9256#1 length = 293 sequences # 1
consensus_9256#2 length = 290 sequences # 1

consensusID : consensus_9256#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 506
fasta sequence

                              [CGAGAGTTCAC-TCGCTC-ACCTTAGGATTCTCTCCTCGACTACCTGTGTCGGTTTGCGGTACGGGTAGTTAAGTACTCACTAGAAGCTTTTCTCGGCAGTGTGACATCAGACGCTTCGCTACTAAATTTCGCTCCCCATCACAGCTTGTCCTTAAAGTGAAAAGCATTTGACTCTTCACCAGACTTACTGCTTGGACATTCTAATCCAACAGAATGCACATCTT-AGCCTCCTGCGTCCCTCCATTGCTCAAACGCACTTAACTAGTACAGGAATCTCAACCTGTTATCCATCGTCTACGCCTCTCGGCCTCGACTTAGGTCCCGACTAACCCTGGGAGGACGAGCCTTCCCCAGGAAACCTTAGTCATTCGGTGGATAGGATTCTCACCTATCTTTCGCTACTCATACCGGCATTCTCACTTCTAAGCGCTCCACAAGTCCTCACGATCTTGCTTCACCGCCCTTAGAACGCTCTCCTATCACGCGACCTAATGGTCGCATCCATGG]

[+] EMBL CD087814             [CGAGAGTTCACATCGCTCGACCTTAGGATTCTCTCCTCGACTACCTGTGTCGGTTTGCGGTACGGGTAGTTAAGTACTCACTAGAAGCTTTTCTCGGCAGTGTGACATCAGACGCTTCGCTACTAAATTTCGCTCCCCATCACAGCTTGTCCTTAAAGTGAAAAGCATTTGACTCTTCACCAGACTTACTGCTTGGACATTCTAATCCAACAGAATGCACATCTT AGCCTCCTGCGTCCCTCCATTGCTCAAACGCACTTAACTAGTACAGGAATCTCAACCTGTTATCCATCGTCTACGCCTCTCGGCCTCGACTTAGGTCCCGACTAACCCTGGGAGGACGAGCCTTCCCCAGGAAACCTTAGTCATTCGGTGGATAGGATTCTCACCTATCTTTCGCTACTCATACCGGCATTCTCACTTCTAAGCGCTCCACAAGTCCTCACGATCTTGCTTCACCGCCCTTAGAACGCTCTCCTATCACGCGACCTAATGGTCGCATCCATG ]
[+] EMBL CD087786             [ GAGAGTTCAC TCGCTC ACCTTAGGATTCTCTCCTCGACTACCTGTGTCGGTTTGCGGTACGGGTAGTTAAGTACTCACTAGAAGCTTTTCTCGGCAGTGTGACATCAGACGCTTCGCTACTAAATTTCGCTCCCCATCACAGCTTGTCCTTAAAGTGAAAAGCATTTGACTCTTCACCAGACTTACTGCTTGGACATTCTAATCCAACAGAATGCACATCTT AGCCTCCTGCGTCCCTCCATTGCTCAAACGCACTTAACTAGTACAGGAATCTCAACCTGTTATCCATCGTCTACGCCTCTCGGCCTCGACTTAGGTCCCGACTAACCCTGGGAGGACGAGCCTTCCCCAGGAAACCTTAGTCATTCGGTGGATAGGATTCTCACCTATCTTTCGCTACTCATACCGGCATTCTCACTTCTAAGCGCTCCACAAGTCCTCACGATCTTGCTTCACCGNCCTTAGAACGCTCTCCTATCACGCGAACTAATGGTCGCATCCATG ]
[+] EMBL CD087921             [ GAGAGTTCAC TCGCTC ACCTTAGGATTCTCTCCTCGACTACCTGTGTCGGTTTGCGGTACGGGTAGTTAAGTACTCACTAGAAGCTTTTCTCGGCAGTGTGACATCAGACGCTTCGCTACTAAATTTCGCTCCCCATCACAGCTTGTCCTTAAAGTGAAAAGCATTTGACTCTTCACCAGACTTACTGCTTGGACATTCTAATCCAACAGAATGCACATCTTNAGCCTCCTGCGTCCCTTCATTGCTCAAACGC                                                                                                                                                                                                                                                            ]
[-] EMBL CD087943             [                                                                                                                                                                                                                                                           AAACGCACTTAACTAGTACAGGAATCTCAACCTGTTATCCATCGTCTACGCCTCTCGGCCTCGACTTAGGTCCCGACTAACCCTGGGAGGACGAGCCTTCCCCAGGAAACCTTAGTCATTCGGTGGATAGGATTCTCACCTATCTTTCGCTACTCATACCGCCATTCTCACTTCTAAGCGCTCCACAAGTCCTCACGATCTTGCTTCACCGCCCTTAGAACGCTCTCCT TCCCACAGCATCATGctatg        ]
[-] EMBL CD087875             [                                                                                                                                                                                                                                                                                     TCAACCTGTTATCCATCGTCTACGCCTCTCGGCCTCGACTTAGGTCCCGACTAACCCTGGGAGGACGAGCCATCCCCAGGAAACCTTAGTCATTCGGTGGATAGGATTCTCACCTATCTTTCGCTACTCATACCGGCATTCTCACTTCTAAGCGCTCCACAAGTCCTCACGATCTTGCTTCACCGCCCTTAGAACGCTCTCCTATCACGCGACCTAATGGTCGCATCCATGG]
[-] EMBL CD087893             [                                                                                                                                                                                                                                                                                      CAACCTGTTATCCATCGTCTACGCCTCTCGGCCTCGACTTAGGTCCCGACTAACCCTGGGAGGACGAGCCTTCCCCAGGAAACCTTAGTCATTCGGTGGATAGGATTCTCACCTATCTTTCGCTACTCATACCGGCATTCTCACTTCTAAGCGCTCCACAAGTCCTCACGATCTTGCTTCACCGCCCTTAGAACGCTCTCCTATCACGCGACCTAATGGTCGCATCCATGG]
[-] EMBL CD087807             [                                                                                                                                                                                                                                                                                                                                                                                           AGGATTCTCACCTATCTTTCGCTACTCATACCGGCATTCTCACTCCTAAGCGCTCCACAAGTCCTCACGATCTTGCTTCACCGCCCTTAGAACGCTCTCCTATCACGCGAACTAAAGGTtagta      ]




>consensus_9256#0
CGAGAGTTCACTCGCTCACCTTAGGATTCTCTCCTCGACTACCTGTGTCGGTTTGCGGTA
CGGGTAGTTAAGTACTCACTAGAAGCTTTTCTCGGCAGTGTGACATCAGACGCTTCGCTA
CTAAATTTCGCTCCCCATCACAGCTTGTCCTTAAAGTGAAAAGCATTTGACTCTTCACCA
GACTTACTGCTTGGACATTCTAATCCAACAGAATGCACATCTTAGCCTCCTGCGTCCCTC
CATTGCTCAAACGCACTTAACTAGTACAGGAATCTCAACCTGTTATCCATCGTCTACGCC
TCTCGGCCTCGACTTAGGTCCCGACTAACCCTGGGAGGACGAGCCTTCCCCAGGAAACCT
TAGTCATTCGGTGGATAGGATTCTCACCTATCTTTCGCTACTCATACCGGCATTCTCACT
TCTAAGCGCTCCACAAGTCCTCACGATCTTGCTTCACCGCCCTTAGAACGCTCTCCTATC
ACGCGACCTAATGGTCGCATCCATGG

consensusID : consensus_9256#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 293
fasta sequence

                              [CCATCGTTCAAACATGATTAACTAGTACAGGAATATCAACCTGTTATCCATCGCCTACGCCTTGCGGCCTCGGCTTAGGTCCCGACTAACCCTGGGAGGACGAGCCTTCCCCAGGAAACCTTAGTCATTCGGTGGATCAGATTCTCACTGATCTTTCGCTACTCATACCGGCATTCTCACTTCTAAGCGCTCCACAAGTCCTTGCGATCTTGCTTCGTTGCCCTTAGAACGCTCTCCTATCACTCGACCTTACGGTCGAATCCACAATTTCGGTAACATGCTTAGCCCCGGTA]

[-] EMBL CD087648             [CCATCGTTCAAACATGATTAACTAGTACAGGAATATCAACCTGTTATCCATCGCCTACGCCTTGCGGCCTCGGCTTAGGTCCCGACTAACCCTGGGAGGACGAGCCTTCCCCAGGAAACCTTAGTCATTCGGTGGATCAGATTCTCACTGATCTTTCGCTACTCATACCGGCATTCTCACTTCTAAGCGCTCCACAAGTCCTTGCGATCTTGCTTCGTTGCCCTTAGAACGCTCTCCTATCACTCGACCTTACGGTCGAATCCACAATTTCGGTAACATGCTTAGCCCCGGTA]




>consensus_9256#1
CCATCGTTCAAACATGATTAACTAGTACAGGAATATCAACCTGTTATCCATCGCCTACGC
CTTGCGGCCTCGGCTTAGGTCCCGACTAACCCTGGGAGGACGAGCCTTCCCCAGGAAACC
TTAGTCATTCGGTGGATCAGATTCTCACTGATCTTTCGCTACTCATACCGGCATTCTCAC
TTCTAAGCGCTCCACAAGTCCTTGCGATCTTGCTTCGTTGCCCTTAGAACGCTCTCCTAT
CACTCGACCTTACGGTCGAATCCACAATTTCGGTAACATGCTTAGCCCCGGTA

consensusID : consensus_9256#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 290
fasta sequence

                              [TCGGTTTGCGGTACGGGCACCTCTCACCTCGCTAGAGGCTTTTCTTGGCAGTGTGGAATCAGGAACTTCGGTACTCTATTTCCCTCGCCATCACAGCTCCGCCTTTCGGCAAGCGGATTTGCCTACTTGCCAGCCTAACTGCTTGGACGCCCACAACCAGTCGCGCGCTTGCCCTATCCTCCTGCGTCCCCCCATGGCTCAAACGGTGAGGAGGTGGTACAGGAATCTCTACCCGTTGTCCATCGCCTACGCCTTTCGGCCTCGGCTTAGGTCCCGACTAACCCTGAGCG]

[+] EMBL CD163575             [TCGGTTTGCGGTACGGGCACCTCTCACCTCGCTAGAGGCTTTTCTTGGCAGTGTGGAATCAGGAACTTCGGTACTCTATTTCCCTCGCCATCACAGCTCCGCCTTTCGGCAAGCGGATTTGCCTACTTGCCAGCCTAACTGCTTGGACGCCCACAACCAGTCGCGCGCTTGCCCTATCCTCCTGCGTCCCCCCATGGCTCAAACGGTGAGGAGGTGGTACAGGAATCTCTACCCGTTGTCCATCGCCTACGCCTTTCGGCCTCGGCTTAGGTCCCGACTAACCCTGAGCG]




>consensus_9256#2
TCGGTTTGCGGTACGGGCACCTCTCACCTCGCTAGAGGCTTTTCTTGGCAGTGTGGAATC
AGGAACTTCGGTACTCTATTTCCCTCGCCATCACAGCTCCGCCTTTCGGCAAGCGGATTT
GCCTACTTGCCAGCCTAACTGCTTGGACGCCCACAACCAGTCGCGCGCTTGCCCTATCCT
CCTGCGTCCCCCCATGGCTCAAACGGTGAGGAGGTGGTACAGGAATCTCTACCCGTTGTC
CATCGCCTACGCCTTTCGGCCTCGGCTTAGGTCCCGACTAACCCTGAGCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9256#0      CGAGAGTTCACTCGCTCACCTTAGGATTCTCTCCTCGACTACCTGTGTCGGTTTGCGGTA 60
consensus_9256#1      ------------------------------------------------------------
consensus_9256#2      ------------------------------------------------------------
                                                                                  

consensus_9256#0      CGGGTAGTTAAGTACTCACTAGAAGCTTTTCTCGGCAGTGTGACATCAGACGCTTCGCTA 120
consensus_9256#1      ------------------------------------------------------------
consensus_9256#2      ------------------------------------------------------------
                                                                                  

consensus_9256#0      CTAAATTTCGCTCCCCATCACAGCTTGTCCTTAAAGTGAAAAGCATTTGACTCTTCACCA 180
consensus_9256#1      ------------------------------------------------------------
consensus_9256#2      ------------------------------------------------------------
                                                                                  

consensus_9256#0      GACTTACTGCTTGGACATTCTAATCCAACAGAATGCACATCTTAGCCTCCTGCGTCCCTC 240
consensus_9256#1      -----------------------------------------------------------C 1
consensus_9256#2      ------------------------------------------------------------
                                                                                  

consensus_9256#0      CATTG--CTCAAACGCACTTAACTAGTACAGGAATCTCAACCTGTTATCCATCGTCTACG 298
consensus_9256#1      CATCG--TTCAAACATGATTAACTAGTACAGGAATATCAACCTGTTATCCATCGCCTACG 59
consensus_9256#2      --TCGGTTTGCGGTACGGGCACCTCTCACCTCGCTAG-AGGCTTTTCTTGGCAGTGTGGA 57
                        * *   *           * **   **     *   *  ** ** *     *  *   

consensus_9256#0      CCTCTCGGCCTCGACTTAGGTCCCGACTAACCCTGGGAGGACGAGCCTTCCCCAGGAAAC 358
consensus_9256#1      CCTTGCGGCCTCGGCTTAGGTCCCGACTAACCCTGGGAGGACGAGCCTTCCCCAGGAAAC 119
consensus_9256#2      ATCAGGAACTTCGGTACTCTATTTCCCTCGCCATCACAGCTCCGCCTTTCGGCAAGCGGA 117
                              * ***             **  ** *   **  *   * ***  ** *    

consensus_9256#0      CTTAGTCATTCGGTGGATAGGATTCTCACCTATCTTTCGCTACTCATACCGGCATTCTCA 418
consensus_9256#1      CTTAGTCATTCGGTGGATCAGATTCTCACTGATCTTTCGCTACTCATACCGGCATTCTCA 179
consensus_9256#2      TTTGCCTACTTGCCAGCCTAACTGCTTGGACGCCCACAACCAGTCGCGCGCTTGCCCTAT 177
                       **    * * *   *      * **       *     * * **   *       **  

consensus_9256#0      CTTCTAAGCGCTCCACAAGTCCTCACGATCTTGCTTCACCGCCCTTAGAACGCTCTCCTA 478
consensus_9256#1      CTTCTAAGCGCTCCACAAGTCCTTGCGATCTTGCTTCGTTGCCCTTAGAACGCTCTCCTA 239
consensus_9256#2      CCTCCT-GCGTCCCCCCATGGCTCA-AACGGTGAGGAGGTGGTACAGGAATCTCTACCCG 235
                      * **   ***  ** * *   **    *   **       *      ***      **  

consensus_9256#0      TCACGCGAC-CTAATGG-TCGCATCCATGG--------------------------- 506
consensus_9256#1      TCACTCGAC-CTTACGG-TCGAATCCACAATTTCGGTAACATGCTTAGCCCCGGTA- 293
consensus_9256#2      TTGTCCATCGCCTACGCCTTTCGGCCTCGGCTTAGGT--CCCGACTAACCCTGAGCG 290
                      *    *  * *  * *  *     **