These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9260#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1015 fasta sequence [TCACCGGGTGATACAGAAGCAGGATC-ACTGGTAGCTAAATGGTGTCCACCCGGGTCTGCCATCTGAGTTTTATGCTATATTAAGAAGACAAGCGGAAGTCGTTGTTTCTGCGCGTGTTCCACGCCTTTCAAGATAATCCGTATCGTCCTGAACCTTACCATCGGAAGCTTGGTCCGTATACAGCTTACGTAGAGATGCTTGAAATGGTTAATACATACAGGGTTGGTACTAGTCAGGGTGAAACCCTGGAACTTTATGAAGCTTTAAGAAATTATGCTAAAATTTATCGTCCTTCTGGACCACATTCTCGAGCACTTACAAAGTATGAGCTGGCCTTAAATGAA-GCTGCTGCTCAGATTTGCCGATTTCAACCTGGTTTACTTTTTCATAAACGAGATCTGTATCATCTTGCTAAAGAAACAGTTGAACGTTCACAGACCCTCTTAAATACAGAGAGAAGACAACAAAATCAACAATTACAACAGCTGGCACAACAAGCACAACAACAACAAGCTCAAGCAAAACAAAATATGAATACTCAACGTCAAGCAAATCAAACAAATATGTCAAAACCAAAAGTCTCTCTTCCTATACCTCAACCCCCACGTACTACACCTCAAACTGTAGCAGTTGGAGGTCGTGTAGCTAGTTCTCAATTAGCTATGTTGGAATCTCGTGGTCTTTCTGCTATTCCACAATCAAATACAGCAGTATCAACAGCTAGTTCTATAACTTCTATTCATGAGAATTCTAATTCAGATAACCCACTTCTAACTTCAAATCTTCAAGGCTCAGGAGTAAATACGCTTCAGTCGAATAAACCGAGGGTAATGACTAATGATAACACGTAAGTGAGCGCTAAAATTGTCAGTGTCTTCCATTATAGAAATCTAGGTTTTTAGTAGTTTTAACATTGTGTACTGGTGTTTATAGCTATTGTAGCGATGAATTTTTGGTTAAAATACTGGGTTTCCAATCTATCAGCTGCATCCTCGAATTTCATTNCATATGTTTC] [-] EMBL CD202535 [TCACCGGGTGATACAGAAGCAGGATC ACTGGTAGCTAAATGGTGTCCACCCGGGTCTGCCATCTGAGTTTTATGCTATATTAAGAAGACAAGCGGAAGTCGTTGTTTCTGCGCGTGTTCCACGCCTTTCAAGATAATCCGTATCGTCCTGAACCTTACCATCGGAAGCTTGGTCCGTATACAGCTTACGTAGAGATGCTTGAAATGGTTAATACATACAGGGTTGGTACTAGTCAGGGTGAAACCCTGGAACTTTATGAAGCTTTAAGAAATTATGCTAAAATTTATCGTCCTTCTGGACCACATTCTCGAGCACTTACAAAGTATGAGCTGGCCTTAAATGAA GCTGCTGCTCAGATTTGCCGATTTCAACCTGGTTTACTTTTTCATAAACGAGATCTGTATCATCTTGCTAAAGAAACAGTTGAACGTTCACAGACCCTCTTAAATACAGAGAGAAGACAACAAAGTCAACAATTACAA ] [+] EMBL CD202332 [ CACCGGGTGATACAGAAGCAGGATCAACT GTAGCTAAATGGTGTCCACCC GGTCTGCCATCTGAGTTTTATGCTATATTAAGAAGACAAGCGGAAGTCGTTGTTTCTACGCGTGTTCCACGCTTTTC AGATAATCCGTATCGTCCTGAACCTTACCATCGGAAGCTTGGTCCGTATACAGCTTACGTAGAGATGCTTGAAATGGTTAATACATACAGGGTTGGTACTAGTCAGGGTGAAACCCTGGAACTTTATGAAGCTTTAAGAAATTATGCTAAAATTTATCGTCCTTCTGGACCACATTCTCGAGCACTTACAAAGTATGAGCTGGCCTTAAATGAA GCTGCTGCTCAGATTTGCCGATTTCAACCTGGTTTACTTTTTCATAAACGAGATCTGTATCATCTTGCTAAAGAAACGGTTGAACGTTCACAGACCCTCTT AATACAGAGAGAAGACAACAAAA ] [-] EMBL CD179482 [ GGGTGAAACCCTGGAACTTTATGAAGCTTTAAGAAATTATGCTAAAATTTATCGTCCTTCTGGACCACATTCTCGAGCACTTACAAAGTATGAGCTGGCCTTAAATGAA GCTGCTGTTCAGATTTGCCGATTTCAACCTGGTTTACTTCTTCATAAACGAGATCTGTATCATCTTGCTAAAGAAACAGTTGAACGTTCACAGACCCTCTTAAATACAGAGAGAAGACAACAAAATCAACAATTAC ] [+] EMBL CD116447 [ TTATGAAGCTTTAAGAAATTATGCTAAGATTTATCGTCCTTCTGGACCACATTCTCGAGCACTTACAAAGTATGAGCTGGCCTTAAATGAA GCTGCTGCTCAGATTTGCCGATTTCAACCTGGTTTACTTTTTCATAAACGAGATCTGTATCATCTTGCTAAAGAAACAGTTGAACGTTCACAGACCCTCTTAAATACAGAGAGAAGACAACAAAATCAACAATTACAACAGCTGGCACAACAAGCACAACAACA ] [-] EMBL CD123072 [ AAAGTATGAGCGGGCCTTAAATGAAGGCTGCTGCTCAGATTTGCCGATTTCAACGTGGTTTACTTTTTCATAAACGAGATCTGTATCATCTTGCTAAAGAAACAGTTGAACGTTCACAGACCCTCTTAAATACAGAGAGAAGACAACAAAATCAACAATTACAACAGCTGGCACAACAAGCACAACAACAACAAGCTCAAGCAAAACAAAATATGAATACTCAACGTCAAGCAAATCAAACAAATATGTCAAAACCAAAAGTCTCTCTTCCTATACCTCAACCCCCACGTACTACACCTCAAACTGTAGCAGTTGGAGGTCGTGTAGCTAGTTCTCAATTAGCTATGTTGGAATCTCGTGGTCTTTCTGCTATTCCACAATCAAATACAGCAGTATCAACAGCTAGTTCTATAACTTCTATTCATGAGAATTC ] [+] EMBL CD194643 [ GAA GCTGCTGCTCAGATTTGCCGATTTCAACCTGGTTTACTTTTTCATAAACGAGATCTGTATCATCTTGCTAAAGAAACAGTTGAACGTTCACAGACCCTCTTAAATACAGAGAGAAGACAACAAAATCA ] [+] EMBL CD194702 [ GAA GCTGCTGCTCAGATTTGCCGATTTCAACCTGGTTTACTTTTTCATAAACGAGATCTGTATCATCTTGCTAAAGAAACAGTTGAACGTTCACAGACCCTCTTAAATACAGAGAGAAGACAACAAAATCA ] [+] EMBL CD095122 [ CTGGTTTACTTTTTCATAAACGAGATCTGTATCATCTTGCTAAAGAAACAGTTGAACGTTCACAGACCCTCTTAAATACAGAGAGAAGACAACAAAATCAACAATTACAACAGCTGGCACAACAAGCACAACAACAACAAGCTCAAGCAAAACAAAATATGAATACTCAACGTCAAGCAAATCAAACAAATATGTCAAAACCAAAAGTCTCTCTTCCTATACCTCAACCCCCACGTACTACACCTCAAACTGTAGCAGTTGGAGGTCGTGTAGCTAGTTCTCAATTAGCTATGTTGGAATCTCGTGGTCTTTCTGCTATTCCACAATCAAATACAGCAGTATCAACAGCTAGTTCTATAACTTCTATTCATGAGAATTCTAATTCAGATAACCCACTTCTAACTTCAAATCTTCAAGGCTCAGGAGTAAATACGCTTCAGTCGAATAAACCGAGGGTAATGACTAATGATAACACGTAAGTGAGCGCTAAAATTGTCAGTGTCTTCCATTATAGAAATCTAGGTTTTTAGTAGTTTTAACATTGTGTACTGGTGTTTATAGCTATTGTAGCGATGAATTTTTGGTTAAAATACTGGGTTTCCAATCTATCAGCTGCATCCTCGAATTTCATTNCATATGTTTC] consensusID : consensus_9260#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 260 fasta sequence [TAGTTCTATAACTTCTATTCATGAGAATTCTAATTCAGATAACCCACTTCTAACTTCAAATCTTCAAGGCTCAGGAGTAAATACGCTTCAGTCGAATAAACCGAGGGTAATGACTAATGATAACACTGTTCAATACTTATCTAACCTTCCTATTGCCAAACGTGATTCGGCATACAAACTTTTGCCTAACGAAGAGGAAGCCATTCGCGTTGCCGCAGTGGATGTTTTATCAGATATGCCACAACTCCAAATCAAACCGA] [+] EMBL CD178939 [TAGTTCTATAACTTCTATTCATGAGAATTCTAATTCAGATAACCCACTTCTAACTTCAAATCTTCAAGGCTCAGGAGTAAATACGCTTCAGTCGAATAAACCGAGGGTAATGACTAATGATAACACTGTTCAATACTTATCTAACCTTCCTATTGCCAAACGTGATTCGGCATACAAACTTTTGCCTAACGAAGAGGAAGCCATTCGCGTTGCCGCAGTGGATGTTTTATCAGATATGCCACAACTCCAAATCAAACCGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9260#0 TCACCGGGTGATACAGAAGCAGGATCACTGGTAGCTAAATGGTGTCCACCCGGGTCTGCC 60 consensus_9260#1 ------------------------------------------------------------ consensus_9260#0 ATCTGAGTTTTATGCTATATTAAGAAGACAAGCGGAAGTCGTTGTTTCTGCGCGTGTTCC 120 consensus_9260#1 ------------------------------------------------------------ consensus_9260#0 ACGCCTTTCAAGATAATCCGTATCGTCCTGAACCTTACCATCGGAAGCTTGGTCCGTATA 180 consensus_9260#1 ------------------------------------------------------------ consensus_9260#0 CAGCTTACGTAGAGATGCTTGAAATGGTTAATACATACAGGGTTGGTACTAGTCAGGGTG 240 consensus_9260#1 ------------------------------------------------------------ consensus_9260#0 AAACCCTGGAACTTTATGAAGCTTTAAGAAATTATGCTAAAATTTATCGTCCTTCTGGAC 300 consensus_9260#1 ------------------------------------------------------------ consensus_9260#0 CACATTCTCGAGCACTTACAAAGTATGAGCTGGCCTTAAATGAAGCTGCTGCTCAGATTT 360 consensus_9260#1 ------------------------------------------------------------ consensus_9260#0 GCCGATTTCAACCTGGTTTACTTTTTCATAAACGAGATCTGTATCATCTTGCTAAAGAAA 420 consensus_9260#1 ------------------------------------------------------------ consensus_9260#0 CAGTTGAACGTTCACAGACCCTCTTAAATACAGAGAGAAGACAACAAAATCAACAATTAC 480 consensus_9260#1 ------------------------------------------------------------ consensus_9260#0 AACAGCTGGCACAACAAGCACAACAACAACAAGCTCAAGCAAAACAAAATATGAATACTC 540 consensus_9260#1 ------------------------------------------------------------ consensus_9260#0 AACGTCAAGCAAATCAAACAAATATGTCAAAACCAAAAGTCTCTCTTCCTATACCTCAAC 600 consensus_9260#1 ------------------------------------------------------------ consensus_9260#0 CCCCACGTACTACACCTCAAACTGTAGCAGTTGGAGGTCGTGTAGCTAGTTCTCAATTAG 660 consensus_9260#1 ------------------------------------------------------------ consensus_9260#0 CTATGTTGGAATCTCGTGGTCTTTCTGCTATTCCACAATCAAATACAGCAGTATCAACAG 720 consensus_9260#1 ------------------------------------------------------------ consensus_9260#0 CTAGTTCTATAACTTCTATTCATGAGAATTCTAATTCAGATAACCCACTTCTAACTTCAA 780 consensus_9260#1 -TAGTTCTATAACTTCTATTCATGAGAATTCTAATTCAGATAACCCACTTCTAACTTCAA 59 *********************************************************** consensus_9260#0 ATCTTCAAGGCTCAGGAGTAAATACGCTTCAGTCGAATAAACCGAGGGTAATGACTAATG 840 consensus_9260#1 ATCTTCAAGGCTCAGGAGTAAATACGCTTCAGTCGAATAAACCGAGGGTAATGACTAATG 119 ************************************************************ consensus_9260#0 ATAACACGTAAGTGAGCGCTAAAATTGTCAGTGTCTTCCATTATAGAAATCTAGGTT--T 898 consensus_9260#1 ATAACACT-------GTTCAATACTTATCTAACCTTCCTATTGCC-AAACGTGATTCGGC 171 ******* * * * * ** ** * * *** *** * * consensus_9260#0 TTAGTAGTTTTAACATTGTGTACTGGTGTTTATAGCTATTGTAGCGATGAATTTTTGGTT 958 consensus_9260#1 ATACAAACTTTTGCCTAACGAAGAGGAAGCCATTCGCGTTGCCGCAGTGGATGTTTTATC 231 ** * *** * * * * ** ** *** ** ** ** *** * consensus_9260#0 AAA-ATACTGGGTTTCCAATCTATCAGCTGCATCCTCGAATTTCATTNCATATGTTTC 1015 consensus_9260#1 AGATATGCCACAACTCCAAATCA--AACCGA--------------------------- 260 * * ** * ***** * * * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||