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Schistosoma mansoni
cluster # 9260 cluster # 9260       Sequences # 9       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9260#0 length = 1015 sequences # 8  
consensus_9260#1 length = 260 sequences # 1  

consensusID : consensus_9260#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 1015
fasta sequence
                              [TCACCGGGTGATACAGAAGCAGGATC-ACTGGTAGCTAAATGGTGTCCACCCGGGTCTGCCATCTGAGTTTTATGCTATATTAAGAAGACAAGCGGAAGTCGTTGTTTCTGCGCGTGTTCCACGCCTTTCAAGATAATCCGTATCGTCCTGAACCTTACCATCGGAAGCTTGGTCCGTATACAGCTTACGTAGAGATGCTTGAAATGGTTAATACATACAGGGTTGGTACTAGTCAGGGTGAAACCCTGGAACTTTATGAAGCTTTAAGAAATTATGCTAAAATTTATCGTCCTTCTGGACCACATTCTCGAGCACTTACAAAGTATGAGCTGGCCTTAAATGAA-GCTGCTGCTCAGATTTGCCGATTTCAACCTGGTTTACTTTTTCATAAACGAGATCTGTATCATCTTGCTAAAGAAACAGTTGAACGTTCACAGACCCTCTTAAATACAGAGAGAAGACAACAAAATCAACAATTACAACAGCTGGCACAACAAGCACAACAACAACAAGCTCAAGCAAAACAAAATATGAATACTCAACGTCAAGCAAATCAAACAAATATGTCAAAACCAAAAGTCTCTCTTCCTATACCTCAACCCCCACGTACTACACCTCAAACTGTAGCAGTTGGAGGTCGTGTAGCTAGTTCTCAATTAGCTATGTTGGAATCTCGTGGTCTTTCTGCTATTCCACAATCAAATACAGCAGTATCAACAGCTAGTTCTATAACTTCTATTCATGAGAATTCTAATTCAGATAACCCACTTCTAACTTCAAATCTTCAAGGCTCAGGAGTAAATACGCTTCAGTCGAATAAACCGAGGGTAATGACTAATGATAACACGTAAGTGAGCGCTAAAATTGTCAGTGTCTTCCATTATAGAAATCTAGGTTTTTAGTAGTTTTAACATTGTGTACTGGTGTTTATAGCTATTGTAGCGATGAATTTTTGGTTAAAATACTGGGTTTCCAATCTATCAGCTGCATCCTCGAATTTCATTNCATATGTTTC]

[-] EMBL CD202535             [TCACCGGGTGATACAGAAGCAGGATC ACTGGTAGCTAAATGGTGTCCACCCGGGTCTGCCATCTGAGTTTTATGCTATATTAAGAAGACAAGCGGAAGTCGTTGTTTCTGCGCGTGTTCCACGCCTTTCAAGATAATCCGTATCGTCCTGAACCTTACCATCGGAAGCTTGGTCCGTATACAGCTTACGTAGAGATGCTTGAAATGGTTAATACATACAGGGTTGGTACTAGTCAGGGTGAAACCCTGGAACTTTATGAAGCTTTAAGAAATTATGCTAAAATTTATCGTCCTTCTGGACCACATTCTCGAGCACTTACAAAGTATGAGCTGGCCTTAAATGAA GCTGCTGCTCAGATTTGCCGATTTCAACCTGGTTTACTTTTTCATAAACGAGATCTGTATCATCTTGCTAAAGAAACAGTTGAACGTTCACAGACCCTCTTAAATACAGAGAGAAGACAACAAAGTCAACAATTACAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CD202332             [ CACCGGGTGATACAGAAGCAGGATCAACT GTAGCTAAATGGTGTCCACCC GGTCTGCCATCTGAGTTTTATGCTATATTAAGAAGACAAGCGGAAGTCGTTGTTTCTACGCGTGTTCCACGCTTTTC AGATAATCCGTATCGTCCTGAACCTTACCATCGGAAGCTTGGTCCGTATACAGCTTACGTAGAGATGCTTGAAATGGTTAATACATACAGGGTTGGTACTAGTCAGGGTGAAACCCTGGAACTTTATGAAGCTTTAAGAAATTATGCTAAAATTTATCGTCCTTCTGGACCACATTCTCGAGCACTTACAAAGTATGAGCTGGCCTTAAATGAA GCTGCTGCTCAGATTTGCCGATTTCAACCTGGTTTACTTTTTCATAAACGAGATCTGTATCATCTTGCTAAAGAAACGGTTGAACGTTCACAGACCCTCTT AATACAGAGAGAAGACAACAAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL CD179482             [                                                                                                                                                                                                                                            GGGTGAAACCCTGGAACTTTATGAAGCTTTAAGAAATTATGCTAAAATTTATCGTCCTTCTGGACCACATTCTCGAGCACTTACAAAGTATGAGCTGGCCTTAAATGAA GCTGCTGTTCAGATTTGCCGATTTCAACCTGGTTTACTTCTTCATAAACGAGATCTGTATCATCTTGCTAAAGAAACAGTTGAACGTTCACAGACCCTCTTAAATACAGAGAGAAGACAACAAAATCAACAATTAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CD116447             [                                                                                                                                                                                                                                                              TTATGAAGCTTTAAGAAATTATGCTAAGATTTATCGTCCTTCTGGACCACATTCTCGAGCACTTACAAAGTATGAGCTGGCCTTAAATGAA GCTGCTGCTCAGATTTGCCGATTTCAACCTGGTTTACTTTTTCATAAACGAGATCTGTATCATCTTGCTAAAGAAACAGTTGAACGTTCACAGACCCTCTTAAATACAGAGAGAAGACAACAAAATCAACAATTACAACAGCTGGCACAACAAGCACAACAACA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CD123072             [                                                                                                                                                                                                                                                                                                                                AAAGTATGAGCGGGCCTTAAATGAAGGCTGCTGCTCAGATTTGCCGATTTCAACGTGGTTTACTTTTTCATAAACGAGATCTGTATCATCTTGCTAAAGAAACAGTTGAACGTTCACAGACCCTCTTAAATACAGAGAGAAGACAACAAAATCAACAATTACAACAGCTGGCACAACAAGCACAACAACAACAAGCTCAAGCAAAACAAAATATGAATACTCAACGTCAAGCAAATCAAACAAATATGTCAAAACCAAAAGTCTCTCTTCCTATACCTCAACCCCCACGTACTACACCTCAAACTGTAGCAGTTGGAGGTCGTGTAGCTAGTTCTCAATTAGCTATGTTGGAATCTCGTGGTCTTTCTGCTATTCCACAATCAAATACAGCAGTATCAACAGCTAGTTCTATAACTTCTATTCATGAGAATTC                                                                                                                                                                                                                                                                        ]
[+] EMBL CD194643             [                                                                                                                                                                                                                                                                                                                                                      GAA GCTGCTGCTCAGATTTGCCGATTTCAACCTGGTTTACTTTTTCATAAACGAGATCTGTATCATCTTGCTAAAGAAACAGTTGAACGTTCACAGACCCTCTTAAATACAGAGAGAAGACAACAAAATCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CD194702             [                                                                                                                                                                                                                                                                                                                                                      GAA GCTGCTGCTCAGATTTGCCGATTTCAACCTGGTTTACTTTTTCATAAACGAGATCTGTATCATCTTGCTAAAGAAACAGTTGAACGTTCACAGACCCTCTTAAATACAGAGAGAAGACAACAAAATCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CD095122             [                                                                                                                                                                                                                                                                                                                                                                                      CTGGTTTACTTTTTCATAAACGAGATCTGTATCATCTTGCTAAAGAAACAGTTGAACGTTCACAGACCCTCTTAAATACAGAGAGAAGACAACAAAATCAACAATTACAACAGCTGGCACAACAAGCACAACAACAACAAGCTCAAGCAAAACAAAATATGAATACTCAACGTCAAGCAAATCAAACAAATATGTCAAAACCAAAAGTCTCTCTTCCTATACCTCAACCCCCACGTACTACACCTCAAACTGTAGCAGTTGGAGGTCGTGTAGCTAGTTCTCAATTAGCTATGTTGGAATCTCGTGGTCTTTCTGCTATTCCACAATCAAATACAGCAGTATCAACAGCTAGTTCTATAACTTCTATTCATGAGAATTCTAATTCAGATAACCCACTTCTAACTTCAAATCTTCAAGGCTCAGGAGTAAATACGCTTCAGTCGAATAAACCGAGGGTAATGACTAATGATAACACGTAAGTGAGCGCTAAAATTGTCAGTGTCTTCCATTATAGAAATCTAGGTTTTTAGTAGTTTTAACATTGTGTACTGGTGTTTATAGCTATTGTAGCGATGAATTTTTGGTTAAAATACTGGGTTTCCAATCTATCAGCTGCATCCTCGAATTTCATTNCATATGTTTC]


>consensus_9260#0 TCACCGGGTGATACAGAAGCAGGATCACTGGTAGCTAAATGGTGTCCACCCGGGTCTGCC ATCTGAGTTTTATGCTATATTAAGAAGACAAGCGGAAGTCGTTGTTTCTGCGCGTGTTCC ACGCCTTTCAAGATAATCCGTATCGTCCTGAACCTTACCATCGGAAGCTTGGTCCGTATA CAGCTTACGTAGAGATGCTTGAAATGGTTAATACATACAGGGTTGGTACTAGTCAGGGTG AAACCCTGGAACTTTATGAAGCTTTAAGAAATTATGCTAAAATTTATCGTCCTTCTGGAC CACATTCTCGAGCACTTACAAAGTATGAGCTGGCCTTAAATGAAGCTGCTGCTCAGATTT GCCGATTTCAACCTGGTTTACTTTTTCATAAACGAGATCTGTATCATCTTGCTAAAGAAA CAGTTGAACGTTCACAGACCCTCTTAAATACAGAGAGAAGACAACAAAATCAACAATTAC AACAGCTGGCACAACAAGCACAACAACAACAAGCTCAAGCAAAACAAAATATGAATACTC AACGTCAAGCAAATCAAACAAATATGTCAAAACCAAAAGTCTCTCTTCCTATACCTCAAC CCCCACGTACTACACCTCAAACTGTAGCAGTTGGAGGTCGTGTAGCTAGTTCTCAATTAG CTATGTTGGAATCTCGTGGTCTTTCTGCTATTCCACAATCAAATACAGCAGTATCAACAG CTAGTTCTATAACTTCTATTCATGAGAATTCTAATTCAGATAACCCACTTCTAACTTCAA ATCTTCAAGGCTCAGGAGTAAATACGCTTCAGTCGAATAAACCGAGGGTAATGACTAATG ATAACACGTAAGTGAGCGCTAAAATTGTCAGTGTCTTCCATTATAGAAATCTAGGTTTTT AGTAGTTTTAACATTGTGTACTGGTGTTTATAGCTATTGTAGCGATGAATTTTTGGTTAA AATACTGGGTTTCCAATCTATCAGCTGCATCCTCGAATTTCATTNCATATGTTTC



consensusID : consensus_9260#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 260
fasta sequence
                              [TAGTTCTATAACTTCTATTCATGAGAATTCTAATTCAGATAACCCACTTCTAACTTCAAATCTTCAAGGCTCAGGAGTAAATACGCTTCAGTCGAATAAACCGAGGGTAATGACTAATGATAACACTGTTCAATACTTATCTAACCTTCCTATTGCCAAACGTGATTCGGCATACAAACTTTTGCCTAACGAAGAGGAAGCCATTCGCGTTGCCGCAGTGGATGTTTTATCAGATATGCCACAACTCCAAATCAAACCGA]

[+] EMBL CD178939             [TAGTTCTATAACTTCTATTCATGAGAATTCTAATTCAGATAACCCACTTCTAACTTCAAATCTTCAAGGCTCAGGAGTAAATACGCTTCAGTCGAATAAACCGAGGGTAATGACTAATGATAACACTGTTCAATACTTATCTAACCTTCCTATTGCCAAACGTGATTCGGCATACAAACTTTTGCCTAACGAAGAGGAAGCCATTCGCGTTGCCGCAGTGGATGTTTTATCAGATATGCCACAACTCCAAATCAAACCGA]


>consensus_9260#1 TAGTTCTATAACTTCTATTCATGAGAATTCTAATTCAGATAACCCACTTCTAACTTCAAA TCTTCAAGGCTCAGGAGTAAATACGCTTCAGTCGAATAAACCGAGGGTAATGACTAATGA TAACACTGTTCAATACTTATCTAACCTTCCTATTGCCAAACGTGATTCGGCATACAAACT TTTGCCTAACGAAGAGGAAGCCATTCGCGTTGCCGCAGTGGATGTTTTATCAGATATGCC ACAACTCCAAATCAAACCGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9260#0      TCACCGGGTGATACAGAAGCAGGATCACTGGTAGCTAAATGGTGTCCACCCGGGTCTGCC 60
consensus_9260#1      ------------------------------------------------------------
                                                                                  

consensus_9260#0      ATCTGAGTTTTATGCTATATTAAGAAGACAAGCGGAAGTCGTTGTTTCTGCGCGTGTTCC 120
consensus_9260#1      ------------------------------------------------------------
                                                                                  

consensus_9260#0      ACGCCTTTCAAGATAATCCGTATCGTCCTGAACCTTACCATCGGAAGCTTGGTCCGTATA 180
consensus_9260#1      ------------------------------------------------------------
                                                                                  

consensus_9260#0      CAGCTTACGTAGAGATGCTTGAAATGGTTAATACATACAGGGTTGGTACTAGTCAGGGTG 240
consensus_9260#1      ------------------------------------------------------------
                                                                                  

consensus_9260#0      AAACCCTGGAACTTTATGAAGCTTTAAGAAATTATGCTAAAATTTATCGTCCTTCTGGAC 300
consensus_9260#1      ------------------------------------------------------------
                                                                                  

consensus_9260#0      CACATTCTCGAGCACTTACAAAGTATGAGCTGGCCTTAAATGAAGCTGCTGCTCAGATTT 360
consensus_9260#1      ------------------------------------------------------------
                                                                                  

consensus_9260#0      GCCGATTTCAACCTGGTTTACTTTTTCATAAACGAGATCTGTATCATCTTGCTAAAGAAA 420
consensus_9260#1      ------------------------------------------------------------
                                                                                  

consensus_9260#0      CAGTTGAACGTTCACAGACCCTCTTAAATACAGAGAGAAGACAACAAAATCAACAATTAC 480
consensus_9260#1      ------------------------------------------------------------
                                                                                  

consensus_9260#0      AACAGCTGGCACAACAAGCACAACAACAACAAGCTCAAGCAAAACAAAATATGAATACTC 540
consensus_9260#1      ------------------------------------------------------------
                                                                                  

consensus_9260#0      AACGTCAAGCAAATCAAACAAATATGTCAAAACCAAAAGTCTCTCTTCCTATACCTCAAC 600
consensus_9260#1      ------------------------------------------------------------
                                                                                  

consensus_9260#0      CCCCACGTACTACACCTCAAACTGTAGCAGTTGGAGGTCGTGTAGCTAGTTCTCAATTAG 660
consensus_9260#1      ------------------------------------------------------------
                                                                                  

consensus_9260#0      CTATGTTGGAATCTCGTGGTCTTTCTGCTATTCCACAATCAAATACAGCAGTATCAACAG 720
consensus_9260#1      ------------------------------------------------------------
                                                                                  

consensus_9260#0      CTAGTTCTATAACTTCTATTCATGAGAATTCTAATTCAGATAACCCACTTCTAACTTCAA 780
consensus_9260#1      -TAGTTCTATAACTTCTATTCATGAGAATTCTAATTCAGATAACCCACTTCTAACTTCAA 59
                       ***********************************************************

consensus_9260#0      ATCTTCAAGGCTCAGGAGTAAATACGCTTCAGTCGAATAAACCGAGGGTAATGACTAATG 840
consensus_9260#1      ATCTTCAAGGCTCAGGAGTAAATACGCTTCAGTCGAATAAACCGAGGGTAATGACTAATG 119
                      ************************************************************

consensus_9260#0      ATAACACGTAAGTGAGCGCTAAAATTGTCAGTGTCTTCCATTATAGAAATCTAGGTT--T 898
consensus_9260#1      ATAACACT-------GTTCAATACTTATCTAACCTTCCTATTGCC-AAACGTGATTCGGC 171
                      *******        *  * * * ** **      * * ***    ***  *   *    

consensus_9260#0      TTAGTAGTTTTAACATTGTGTACTGGTGTTTATAGCTATTGTAGCGATGAATTTTTGGTT 958
consensus_9260#1      ATACAAACTTTTGCCTAACGAAGAGGAAGCCATTCGCGTTGCCGCAGTGGATGTTTTATC 231
                       **  *  ***  * *   * *  **     **     ***  **  ** ** ***  * 

consensus_9260#0      AAA-ATACTGGGTTTCCAATCTATCAGCTGCATCCTCGAATTTCATTNCATATGTTTC 1015
consensus_9260#1      AGATATGCCACAACTCCAAATCA--AACCGA--------------------------- 260
                      * * ** *      *****   *  * * *                            




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)