These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9266#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 982 fasta sequence [AATTCCGATTAAAGTTATTGACTTTCACAATTCCTTTTTTTTCCCAATAATTCATCATTCTAACCAAATCAAAAGCGTAAACG-TTAAAAGAAAAAAAATTGAAGAAAAATGTAAATGTGTACGGTGTACGACAGCTAATGCCTGTTCACACACACACA-ACACACACTCACCTATAACAAACAAAATCGTTTATTCTATTTATTCAATATATTTACATTGTATCCTAATCAGATTCAATATGATGATTCGTAGAATGATTATTTCATTATTTGTTTATTTTGATTATTTTAATAAACTGCTCATAATTCATTCTATATACATGGTGATTATTTTTATTGATCATTGAATCATTTAAATCTGGCGCTTCTTTTTTTATTTAAAAAAACAAAACAATAAATGAACTATTGATTTAAACATTGAATAGAAATCATCTTGATCATGATGATGATGATGGAGACGCCTACATTGTTATAACCATATAACTTTACTATCATTATAAGTAGTATTATTCTTTTGTCATATTAACGATAACAATCTTTTACCTCAAAAATGATTCTTCCCCCCCTCTTTCTCTCTCCTTTTATCTCCATTCGTCATTATTGTTTACAATGAAGAAAGATACTGAAAAAGACAAAAAAAAATTTAATCCGATAGGATGGGGGATAATTTGGTGAATTTTTTCAAATACATTAATCCTAGAAAAAAAAAAGATACAAAATACATGATATTGTTGGTTATATTGATGTTTGAACTCTATTAGTCTCATTATTGAAATCATATTCGACTCAATATATCATATGTACTAAACTTATCAAAAACGAATATACCTTTCACTGCTGCTTTCCTTTCTGTTTAATGACTAGATATAATATAATACTTTTGTTTGTTTAATTATCTACAATCAGATGATTTCTATATGGATAAACTGCTGAATTGATTNTGCAATCATTATCATTACTGGTATGNAATTTCTTTTTTTTTG] [-] EMBL CD066457 [AATTCCGATTAAAGTTATTGACTTTCACAATTCCTTTTTTTTCCCAATAATTCATCATTCTAACCAAATCAAAAGCGTAAACG TTAAAAGAAAAAAAATTGAAGAAAAATGTAAATGTGTACGGTGTACGACAGTTAATGCCTGTTCACACACACACATACACACACTCACNTATAACAAACAAAATCGTTTATTCTATTTATTCAATATATTTACATTGTATCCTAATCAGATTCAATATGATGATTCGTAGAATGATTATTTCATTATTTGTTTATTTTGATTATTTTAATAAACTGCTCATAATTCATTCTATATACATGGTGATTATTTTTATTGATCATTGAATCATTTAAATCTGGCGCTTCTTTTTTTATTTAAAAAAACAAAACAATAAATGAACTATTGATTTAAACATTGAATAGAAATCATCTTGATCATGATGATGATGATGGAGACGCCTACATTGTTATAACCATATAACTTTACTATCATTATAAGTAGTATTATTCTTTTGTCATATTAACGATAACAATCTTTTACCTCAAAAATGATTCTTCCCCCCCT ] [+] EMBL AI976947 [ CAAATCAAAAGCGTAAACGCTTAAAACAAAAAAAATTGAAGAAAAATGTAAATGTGTACGGTGTACGACAGCTAATGCCTGTTCACACACAC ACACACACTCACCTATAACAAACAAAATCGTTTATTCTATTTATTCAATATATTTACATTGTATCCTAATCAGATTCAATATGATGATTCGTAGAATGATTATTTCATTATTTGTTTATTTTGATTATTTTAATAAACTGCTCATAATTCATTCTATATACATGGTGATTATTTTTATTGATCATTGAATCATTTAAATCTGGCGCTTCTTTTTTTATTTAAAAAAACAAAACAATAAATGAACTATTGATTTAAACATTGAATAGAAATCATCTTGATCATGATGATGATGATGGAGACGCCTACATTGTTATAACCATATAACTTTACTATCATTATAAGNAGNATTATTCTTTTGTCATATTAACGATAACAAT ] [+] EMBL CD082859 [ AATGTAAATGTGTACGGTGTACGACAGCTAATGCCTGTTCACACACACACACACACACACTCACCTATAACAAACAAAATCGTTTATTCTATTTATTCAATATATTTACATTGTATCCTAATCAGATTCAATATGATGATTCGTAGAATGATTATTTCATTATTTGTTTATTTTGATTATTTTAATAAACTGCTCATAATTCATTCTATATACATGGTGATTATTTTTATTGATCATTGAATCATTTAAATCTGGCGCTTCTTTTTTTATTTAAAAAAACAAAACAATAAATGAACTATTGATTTAAACATTGAATAGAAATCATCTTGATCATGATGATGATGATGGAGACGCCTACATTGTTATAACCATATAACTTTACTATCATTATAAGTAGTATTATTCTTTTGTCATATTAACGATAACAATCTTTTACCTCAAAAATGATTCTTCCCCCCCTCTTTCTCTCTCCTTTTATCTCCATTCGTCATTATTGTTTACAATGAAGAAAGATACTnng ] [+] EMBL CD078368 [ TTAAATCTGGCGCTTCTTTTTTTATTTAAAAAAACAAAACAATAAATGAACTATTGATTTAAACATTGAATAGAAATCATCTTGATCATGATGATGATGATGGAGACGCCTACATTGTTATAACCATATAACTTTACTATCATTATAAGTAGTATTATTCTTTTGTCATATTAACGATAACAATCTTTTACCTCAAAAATGATTCTTCCCCCCCTCTTTCTCTCTCCTTTTATCTCCATTCGTCATTATTGTTTACAATGAAGAAAGATACTGAAAAAGACAAAAAAAAATTTAATCCGATAGGATGGGGGATAATTTGGTGAATTTTTTCAAATACATTAATCCTAGAAAAAAAAAAGATACAAAATACATGATATTGTTGGTTATATTGATGTTTGAACTCTATTAGTCTCATTATTGAAATCATATTCGACTCAATATATCATATGTACTAAACTTATCAAAAACGAATATACCTTTCACTGCTGCTTTCCTTTCTGTTTAATGACTAGATATAATATAATACTTTTGTTTGTTTAATTATCTACAATCAGATGATTTCTATATGGATAAACTGCTGAATTGATTNTGCAATCATTATCATTACTGGTATGNAATTTCTTTTTTTTTG] [+] EMBL CD078282 [ TTAAATCTGGCGCTTCTTTTTTTATTTAAAAAAACAAAACAATAAATGAACTATTGATTTAAACATTGAATAGAAATCATCTTGATCATGATGATGATGATGGAGACGCCTACATTGTTATAACCATATAACTTTACTATCATTATAAGTAGTATTATTCTTTTGTCATATTAACGATAACAATCTTTTACCTCAAAAATGATTCTTCCCCCCCTCTTTCTCTCTCCTTTTATCTCCATTCGTCATTATTGTTTACAATGAAGAAAGATACTGAAAAAGACAAAAAAAAATTTAATCCGATAGGATGGGGGATAATTTGGTGAATTTTTTCAAATACATTAATCCTAGAAAAAAAAAAGATACAAAATACATGATATTGTTGGTTATATTGATGTTTGAACTCTATTAGTCTCATTATTGAAATCATATTCGACTCAATATATCATATGTACTAAACTTATCAAAAACGAATATACCTTTCACTGCTGCTTTCCTTTCTGTTTAATGACTAGATATAATATAATACTTTTGTTTGTTTAATTATCTACAATCAGATGATTTCTATATGGATAAACTGCTGAATTGATTNTGCAATCATTATCATTACTGNTATGNAATTTCTTTTTTTTT ] [+] EMBL CD083819 [ ATAGGATGGGGGATAATTTGGTGAATTTTTTCAAATACTTTAATCCTAGAAAAAAAAAAGATACAAAATACTTGATATGGTGGGTTAT ] [-] EMBL CD076445 [ ganTAATTTGGTGAATTTTTTCAAATACATTAATCCTAGAAAAAAAAAAGATACAAAATACATGATATTGTTGGTTATATTGATGTTTGAACTCTATTAGTCTCATTATTGAAATCATATTCGACTCAATATATCATATGTACTAAACTTATCAAAAACGAATATACCTTTCACTGCTGCTTTCCTTTCTGTTTAATGACTAGATATAATATAATACTTTTGTTTGTTTAATTATCTACAATCAGATGATTTCTATATGGATAAACTGCTGAATTGATTTTGCAATCATTATCATTACT ] [-] EMBL CD072928 [ AAAAAAAAAGATCCAAAATACATGATATTGTTGGTTATATTGATGTNTGAACTCTATTAGTCTCATTATTGAAATCATATTCGACTCAATATATCATATGTACTAAACTTATCAAAAACGAATATACCTTTCACTGCTGCTTTCCTTTCTGTTTAATGACTAGATATAATATAATACTTTTGTTTGTTTAATTATCTACAATCAGATGATTTCTATATGGATAAACTGCTGAATTGATTTTGCAATCATTATCATTACT ] consensusID : consensus_9266#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 185 fasta sequence [ACGAGGGTTACCATTCTGATGTTGGAGCGGCCTACATTGTTATAACCATATAACTTTACTATCATTATAAGTAGTATTATTCTTTTGTCATATTAACGATAACAATCTTTTACCTCAAAAATGATTCTTCCCCCCCTCTTTCTCTCTCCTTTTATCTCCATTCGTCATTATTGTTTACAATGAAG] [+] EMBL CD083818 [ACGAGGGTTACCATTCTGATGTTGGAGCGGCCTACATTGTTATAACCATATAACTTTACTATCATTATAAGTAGTATTATTCTTTTGTCATATTAACGATAACAATCTTTTACCTCAAAAATGATTCTTCCCCCCCTCTTTCTCTCTCCTTTTATCTCCATTCGTCATTATTGTTTACAATGAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9266#0 AATTCCGATTAAAGTTATTGACTTTCACAATTCCTTTTTTTTCCCAATAATTCATCATTC 60 consensus_9266#1 ------------------------------------------------------------ consensus_9266#0 TAACCAAATCAAAAGCGTAAACGTTAAAAGAAAAAAAATTGAAGAAAAATGTAAATGTGT 120 consensus_9266#1 ------------------------------------------------------------ consensus_9266#0 ACGGTGTACGACAGCTAATGCCTGTTCACACACACACAACACACACTCACCTATAACAAA 180 consensus_9266#1 ------------------------------------------------------------ consensus_9266#0 CAAAATCGTTTATTCTATTTATTCAATATATTTACATTGTATCCTAATCAGATTCAATAT 240 consensus_9266#1 ------------------------------------------------------------ consensus_9266#0 GATGATTCGTAGAATGATTATTTCATTATTTGTTTATTTTGATTATTTTAATAAACTGCT 300 consensus_9266#1 ------------------------------------------------------------ consensus_9266#0 CATAATTCATTCTATATACATGGTGATTATTTTTATTGATCATTGAATCATTTAAATCTG 360 consensus_9266#1 ------------------------------------------------------------ consensus_9266#0 GCGCTTCTTTTTTTATTTAAAAAAACAAAACAATAAATGAACTATTGATTTAAACATTGA 420 consensus_9266#1 ------------------------------------------------------------ consensus_9266#0 ATAGAAATCATCTTGATCATGATGATGATGATGGAGACGCCTACATTGTTATAACCATAT 480 consensus_9266#1 ---------ACGAGGGTTACCATTCTGATGTTGGAGCGGCCTACATTGTTATAACCATAT 51 * * * * ** ***** ***** ********************** consensus_9266#0 AACTTTACTATCATTATAAGTAGTATTATTCTTTTGTCATATTAACGATAACAATCTTTT 540 consensus_9266#1 AACTTTACTATCATTATAAGTAGTATTATTCTTTTGTCATATTAACGATAACAATCTTTT 111 ************************************************************ consensus_9266#0 ACCTCAAAAATGATTCTTCCCCCCCTCTTTCTCTCTCCTTTTATCTCCATTCGTCATTAT 600 consensus_9266#1 ACCTCAAAAATGATTCTTCCCCCCCTCTTTCTCTCTCCTTTTATCTCCATTCGTCATTAT 171 ************************************************************ consensus_9266#0 TGTTTACAATGAAGAAAGATACTGAAAAAGACAAAAAAAAATTTAATCCGATAGGATGGG 660 consensus_9266#1 TGTTTACAATGAAG---------------------------------------------- 185 ************** consensus_9266#0 GGATAATTTGGTGAATTTTTTCAAATACATTAATCCTAGAAAAAAAAAAGATACAAAATA 720 consensus_9266#1 ------------------------------------------------------------ consensus_9266#0 CATGATATTGTTGGTTATATTGATGTTTGAACTCTATTAGTCTCATTATTGAAATCATAT 780 consensus_9266#1 ------------------------------------------------------------ consensus_9266#0 TCGACTCAATATATCATATGTACTAAACTTATCAAAAACGAATATACCTTTCACTGCTGC 840 consensus_9266#1 ------------------------------------------------------------ consensus_9266#0 TTTCCTTTCTGTTTAATGACTAGATATAATATAATACTTTTGTTTGTTTAATTATCTACA 900 consensus_9266#1 ------------------------------------------------------------ consensus_9266#0 ATCAGATGATTTCTATATGGATAAACTGCTGAATTGATTNTGCAATCATTATCATTACTG 960 consensus_9266#1 ------------------------------------------------------------ consensus_9266#0 GTATGNAATTTCTTTTTTTTTG 982 consensus_9266#1 ---------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||