These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9267#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 751 fasta sequence [TTGCCCCCCCTTCTCATTGTACCAGTTCTATGATACAGGTGTTTGATCAGTCACCTTCATCTAATGTTAATTTACATCATTCAATGAATCCAGTTAGTAAGAATAAATTGTTATCTAGTCAAAATAGCCTACCGAAGGGTCTACCTCCTCATTTGGAAACATTGCCACTTGAAGAACAACCATGGTTTCATCCGTTATTAACAAGATCAGAAGCTGAAGAACTAATACGCAATGAACCAGAAGGTAGTTTTCTTGTTCGTCCCAGTGAAACATGTCCTAATGATTTTTCGTTAACTATTAAACATAAATCCTTCTTACATATGAAAATTACACGAAATAGTACTGGTCAATTTATTCTAGGAGAATATAGTCAACCGTATGCAAGTGTTTCGCAAATGATTTATCATTATGCACGAACACTTGTTCCAGTACTTGGTGCCTATTCAGTTACACTGACACATCCTGTATGTAAACGTATCTAATCATCTTATTCTGTTATTAATTCTATTGTTCATCTCACTACTGCTGAATCCTGATGCAATGACTCTGGCTACTCCGTCAGTTTTTCTTGCCTTGTGACTTTTGTCTGCTGCTCCTTCTATCACTACTACCGCTTTATTTGTTTAAGAGTTTAGTGCTATCAATCTTTTATCAGTCGCTTACGTCCCTTTTTTGTGTACTGTTTTGTTGTTCCTTCTCTTCACTGATCCTCAGCTGATTATCACGTTTTCTGTTTATTTTCTTACTATTC] [+] EMBL CD069761 [TTGCCCCCCCTTCTCATTGTACCAGTTCTATGATACAGGTGTTTGATCAGTCACCTTCATCTAATGTTAATTTACATCATTCAATGAATCCAGTTAGTAAGAATAAATTGTTATCTAGTCAAAATAGCCTACCGAAGGGTCTACCTCCTCATTTGGAAACATTGCCACTTGAAGAACAACCATGGTTTCATCCGTTATTAACAAGATCAGAAGCTGAAGAACTAATACGCAATGAACCAGAAGGTAGTTTTCTTGTTCGTCCCAGTGAAACATGTCCTAATGATTTTTCGTTAACTATTAAACATAAATCCTTCTTACATATGAAAATTACACGAAATAGTACTGGTCAATTTATTCTAGGAGAATATAGTCAACCGTATGCAAGTGTTTCGCAAATGATTTATCATTATGCGCGAACACTTGTTCCAGTACTTGGTGGCTATTCAGTTACA ] [-] EMBL CD181590 [ AATTACACGAAATAGTACTGGTCAATTTATTCTAGGAGAATATAGTCAACCGTATGCAAGTGTTTCGCAAATGATTTATCATTATGCACAAACACTTGTTCCAGTACCTGGTGCCTATTCAGTTACACTGACACATCCTGTATGTAAACGTATCTAATCATCTTATTCTGTTATTAATTCTATTGTTCATCTCACTACTGCTGAATCCTGATGCAATGACTCTGGCTACTCCGTCAGTTTTTCTTGCCTTGTGACTTTTGTCTGCTGCTCCTTCTATCACTACTACCGCTTTATTTGTTTAAGAGTTTAGTGCTATCAATCTTTTATCAGTCGCTTACGTCCCTTTTTTGTGTACTGTTTTGTTGTTCCTTCTCTT ] [-] EMBL CD181445 [ aTACACGAAATAGTACTGGTCAA TTATTCTAGGAGAATATAGTCAACCGTATGCAAGTGTNTCGCAAATGATTTATCATTATGCACGAACACTTGTTCCAGTACTTGGTGCCTATTCAGTTACACTGACACATCCTGTATGTAAACGTATCTAATCATCTTATTCTGTTATTAATTCTATTGTTCATCTCACTACTGCTGAATCCTGATGCAATGACTCTGGCTACTCCGTCAGTTTTTCTTGCCTTGTGACTTTTGTCTGCTGCTCCTTCTATCACTACTACCGCTTTATTTGTTTAAGAGTTTAGTGCTATCAATCTTTTATCAGTCGCTTACGTCCCTTTTTTGTGTACTGTTTTGTTGTTCCTTCTCTTCACTGATCCTCAGCTGATTATCACGTTTTCTGTTTATTTTCTTACTATTC] [-] EMBL CD181355 [ tGTCAATTTATTCTAGGAGAATATAGTCAACCGTATGCAAGTGTTTCGCAAATGATTTATCATTATGCACGAACACTTGTTCCAGTACTTGGTGCCTATTCAGTTACACTGACACATCCTGTATGTAAACGTATCTAATCATCTTATTCTGTTATTAATTCTATTGTTCATCTCACTACTGCTGAATCCTGATGCAATGACTCTGGCTACTCCGTCAGTTTTTCTTGCCTTGTGACTTTTGTCTGCTGCTCCTTCTATCACTACTACCGCTTTATTTGTTTAAGAGTTTAGTGCTATCAATCTTTTATCAGTCGCTTACGTCCCTTTTTTGTGTACTGTTTTGTTGTTCCTTCTCTTCACTGATCCTCAGCTGATTATCACGTTT ] [-] EMBL CD066570 [ ATTATAGGAGAATATAGTCACCGGTATGCAAGTGTTTCGCAAATGATTTATCATTATGCACGAACACTTGTTCCAGTACTTGGTGCCTATTCAGTTACACTGACACATCCTGTATGTAAACGTATCTAATCATCTTATTCTGTTATTAATTCTATTGTTCATCTCACT ] [+] EMBL CD201167 [ TATAGTCAACCGTATGCAAGTGTTTCGCAAATGATCTATCATTATGCACGAACACTTGTTCCAGTACTTGGTGCCTATTCAGTTACACTGACACATCCTGTATGTAAACGTATCTAATCATCTTATTCTGTTATTAATTCTATTGTTCATCTCACTACTGCTGAATCCTGATGCAATG ] [-] EMBL CD181488 [ CACTGTTTCCAGTACTTAGTGCCTATTCAGTTACACTGACACATCCTGTATGTAAACGTATCTAATCATCTTATTCTGTTATTAATTCTATTGTTCATCTCACTACTGCTGAATCCTGATGCAATGACTCTGGCTACTCCGTCAGTTTTTCTTGCCTTGTGACTTTTGTCTGCTGCTCCTTCTATCACTACTACCGCTTTATTTGTTTAAGAGTTTAGTGCTATCAATCTTTTATCAGTCGCTTACGTCCCTTTTTTGTGTACTGTTTTGTTGTTCCTTCTCTTCACTGATCCTCAGCTGATTATCACGTTTTCTGTTTATTTTCTTACTATTC] [-] EMBL CD170300 [ AACGTATCTAATCATCTTATTCTGTTATTAATTCTATTGTTCATCTCACTACTGCTGAATCCTGATGCAATGACTCTGGCTACTCCGTCAGTTTTTCTTGCCTTGTGACTTTTGTCTGCTGCTCCTTCTATCACTACTACCGCTTTATTTGTTTAAGAGTTTAGTGCTATCAA ] consensusID : consensus_9267#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 375 fasta sequence [CGTCATTTGGAAACATTGCCACTTGAAGAACAACCATGGTTTCATCCGTTATTAACAAGATCAGAAGCTGAAGAACTAATACGCAATGAACCAGAAGGTAGTTTTCTTGTTCGTCCCAGTGAAACATGTCCTAATGATTTTTCGTTAACTATTAAACATAAATCCTTCTTACATATGAAAATTACACGAAATAGTACTGGTCAATTTATTCTAGGAGAATATAGTCAACCGTATGCAAGTGTTTCGCAAATGATTCATCATTATGCACGAACACTTGTTACAGTGTTTGGAGCGAACGCAGTTACGTTGAAGCATCAGAGAGGATATCATCTCTAAGATGCAGGTACATCAAGCTGACGAGTCACAAATAGGACG] [-] EMBL CD066569 [CGTCATTTGGAAACATTGCCACTTGAAGAACAACCATGGTTTCATCCGTTATTAACAAGATCAGAAGCTGAAGAACTAATACGCAATGAACCAGAAGGTAGTTTTCTTGTTCGTCCCAGTGAAACATGTCCTAATGATTTTTCGTTAACTATTAAACATAAATCCTTCTTACATATGAAAATTACACGAAATAGTACTGGTCAATTTATTCTAGGAGAATATAGTCAACCGTATGCAAGTGTTTCGCAAATGATTCATCATTATGCACGAACACTTGTTACAGTGTTTGGAGCGAACGCAGTTACGTTGAAGCATCAGAGAGGATATCATCTCTAAGATGCAGGTACATCAAGCTGACGAGTCACAAATAGGACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9267#0 TTGCCCCCCCTTCTCATTGTACCAGTTCTATGATACAGGTGTTTGATCAGTCACCTTCAT 60 consensus_9267#1 ------------------------------------------------------------ consensus_9267#0 CTAATGTTAATTTACATCATTCAATGAATCCAGTTAGTAAGAATAAATTGTTATCTAGTC 120 consensus_9267#1 ------------------------------------------------------------ consensus_9267#0 AAAATAGCCTACCGAAGGGTCTACCTCCTCATTTGGAAACATTGCCACTTGAAGAACAAC 180 consensus_9267#1 --------------------------CGTCATTTGGAAACATTGCCACTTGAAGAACAAC 34 * ******************************** consensus_9267#0 CATGGTTTCATCCGTTATTAACAAGATCAGAAGCTGAAGAACTAATACGCAATGAACCAG 240 consensus_9267#1 CATGGTTTCATCCGTTATTAACAAGATCAGAAGCTGAAGAACTAATACGCAATGAACCAG 94 ************************************************************ consensus_9267#0 AAGGTAGTTTTCTTGTTCGTCCCAGTGAAACATGTCCTAATGATTTTTCGTTAACTATTA 300 consensus_9267#1 AAGGTAGTTTTCTTGTTCGTCCCAGTGAAACATGTCCTAATGATTTTTCGTTAACTATTA 154 ************************************************************ consensus_9267#0 AACATAAATCCTTCTTACATATGAAAATTACACGAAATAGTACTGGTCAATTTATTCTAG 360 consensus_9267#1 AACATAAATCCTTCTTACATATGAAAATTACACGAAATAGTACTGGTCAATTTATTCTAG 214 ************************************************************ consensus_9267#0 GAGAATATAGTCAACCGTATGCAAGTGTTTCGCAAATGATTTATCATTATGCACGAACAC 420 consensus_9267#1 GAGAATATAGTCAACCGTATGCAAGTGTTTCGCAAATGATTCATCATTATGCACGAACAC 274 ***************************************** ****************** consensus_9267#0 TTGTTCCAGTACTTGGTGCCTATTCAGTTACACTGACACATCCTGTATGTAAACGTATCT 480 consensus_9267#1 TTGTTACAGTGTTTGGAGCGAACGCAGTTACGTTGAAGCATCAGAGAGGATATCATCTCT 334 ***** **** **** ** * ******* *** **** * * * * * *** consensus_9267#0 AATCATCTTATTCTGTTATTAATTCTATTGTTCATCTCACTACTGCTGAATCCTGATGCA 540 consensus_9267#1 AAGATGCAGGTAC----ATCAAGCTGACGAGTCACA--AATAGGACG------------- 375 ** * * * ** ** * *** * ** * consensus_9267#0 ATGACTCTGGCTACTCCGTCAGTTTTTCTTGCCTTGTGACTTTTGTCTGCTGCTCCTTCT 600 consensus_9267#1 ------------------------------------------------------------ consensus_9267#0 ATCACTACTACCGCTTTATTTGTTTAAGAGTTTAGTGCTATCAATCTTTTATCAGTCGCT 660 consensus_9267#1 ------------------------------------------------------------ consensus_9267#0 TACGTCCCTTTTTTGTGTACTGTTTTGTTGTTCCTTCTCTTCACTGATCCTCAGCTGATT 720 consensus_9267#1 ------------------------------------------------------------ consensus_9267#0 ATCACGTTTTCTGTTTATTTTCTTACTATTC 751 consensus_9267#1 ------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||