These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9275#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 937 fasta sequence [CATCATCATTCAAGAATTAAATCAATTGCATTTATTACTCATTTAAGTGCATTTGGTTTAAAGAATAAACGACGTCTATCACAATTAACAACCAAAAAATTGCATAAACTAAAATCAAATCCTACTAGTCCTAATGATGATTATAACAATAATCATAATTATTATAATAAATCTGGTCAATTAAATCCATTACCAATTACAGAAGTTTATGAATCAGAAAGTTATCATAATCCAAATATTATATCAGATAATTTTAATTTGAACACAATAGAATCATTTGATAATGATTACTTTTTATATAGTTTACAAACAGCTGTATTCAATGGTTTTGTTCCATCAAATCCATTAAATCAACAATATACATATCATGATTATTATAGAATGCCAGGTCGTCAGACAATACCAACTACAACTGCAATAACATCAATACTTCATGAAAAGTTCAACCAATCATCATTTGGTGAAGATTTAAGTTTAGGCAACAATCAATTAACAACACCATCAACTGGATATTATGCATCGAATAGAAGTTCTAGAGTATTTTCACCTGAGTACAATATTAATAGTAATGATAACAGTAATCGTTTTAAATTTCCCCCACCTGGTCCACCAGTTGCTGGTTGGGTTAACCAATTTATTATCAGAACAAACACGCTTGAAAATTCATTGCCTTCATTATCTAATGTGAATACAAAAACATCATCATCGTCACCAGTGACAAACATAATATCGTTGAATGAAAGGCGAACACATCAGTTACAACAACAACAACAGCAACAGAAAAACACTTCTTTCTCTTCATCATTACATAATACACCTTCAAATCATTCACCAATCACAGCGATTGATATTATTGGTTTATCGAGTTCTATTACTATACCAAGTAGATCTATTTCATCTGTACCACCATCTCCACAAAACACAGCCAACAGATATG] [+] EMBL CD187071 [CATCATCATTCAAGAATTAAATCAATTGCATTTATTACTCATTTAAGTGCATTTGGTTTAAAGAATAAACGACGTCTATCACAATTAACAACCAAAAAATTGCATAAACTAAAATCAAATCCTACTAGTCCTAATGATGATTATAACAATAATCATAATTATTATAATAAATCTGGTCAATTAAATCCATTACCAATTACAGAAGTTTATGAATCAGAAAGTTATCATAATCCAAATATTATATCAGATAATTTTAATTTGAACACAATAGAATCATTTGATAATGATTACTTTTTATATAGTTTACAAACAGCTGTATTCAATGGTTTTGTTCCATCAAATCCATTAAATCAACAATATACATATCATGATTATTATAGAATGCCAGGTCGTCAGACAATACCAACTACAACTGCAATAACATCAATACTTCATGAAAAGTTCAACCAATCATCATTTGGTGAAGATTTAAGT ] [+] EMBL CD116522 [ TGATAATGATTACTTTTTATATAGTTTACAAACAGCTGTATTCAATGGTTTTGTTCCATCAAATCCATTAAATCAACAATATACATATCATGATTATTATAGAATGCCAGGTCGTCAGACAATACCAACTACAACTGCAATAACATCAATACTTCATGAAAAGTTCAACCAATCATCATTTGGTGAAGATTTAAGTTTAGGCAACAATCAATTAACAACACCATCAACTGGATATTATGCATCGAATAGAAGTTCTAGAGTATTTTCACCTGAGTACAATATTAATAGTAATGATAACAGTAATCGTTTTAAATTTCCCCCACCTGGTCCACCAGTTGCTGGTTGGGTTAACCAATTTATTATCAGAACAAACACGCTTGAAAATTCATTGCCTTCATTATCTAATGTGAATACAAAAACATCATCATCGTCACCAGTGACAAACATAATATCGTTGAATGAAAGGCGAACACATCAGTTACAACAACAACAACAGCAACAGAAAAACACTTCTTTCTCTTCATCATTACATAATACACCTTCAAATCATTCACCAATCACAGCGATTGATATTATTGGTTTATCGAGTTCTATTACTATACCAAGTAGATCTATTTCATCTGTACCACCATCTCCACAA ] [-] EMBL CD060284 [ ATTGTGCATCGAATAGAAGTTCTAGAGTATTTTCACCTGAGTACAATATTAATAGTAATGATAACAGTAATCGTTTTAAATTTCCCCCACCTGGTCCACCAGTTGCTGGTTGGGTTAACCAATTTATTATCAGAACAAACACGCTTGAAAATTCATTGCCTTCATTATCTAATGTGAATACAAAAACATCATCATCGTCACCAGTGACAAACATAATATCGTTGAATGAAAGGCGAACACATCAGTTACAACAACAACAACAGCAACAGAAAAACACTTCTTTCTCTTCATCATTACATAATACACCTTCAAATCATTCACCAATCACAGCGATTGATATTATTGGTTTATCGAGTTCTATTACTATACCAAGTAGATCTATTTCATCTGTACCACCATCTCCACTAAACACAGCCAACAGATATG] consensusID : consensus_9275#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 662 fasta sequence [ATCATAATGGTGACAGTTGAGAGAGGAAGAGTAAGAGTAAGTAGAACATAGAAAACAGATATTGAGAATAATCTTTAAAAATGCAGTTCAGATAAATAAAAAAAATATGAGTATTAATAAGAGACAGAAGAACACAAATAAAAGAAAGCGAGGAAACAAGAGAAGAGAGCGTGTACAGTTTACGCAATAATAATCATGATAAAATCCGTCGAAGTACAGTGACAGTATGTGAGTATACACAAACGCACACAGAGACAGGTTGAGAAAATTAAATAGAGAATAATAACACTACAGACATACAGCGATTATCTATCTATATAACTAGAAGACAATCGATAATTAGTAAGCAATAACAGATGAGATAACGAATGGAACAACAACAACAACCACACACACAGACGAAAATAGCCAAAACAATAATCAAGTTTGACAAGATCACAATGTATATTACTACTATTTAATTAGTAGGTGTATTATAGCAAAGCCAATATCATTGGTACTAATAGCAGAAGTATGTACATAGGTATGATGCATAAATAAGCAATAATAATAATAATCTAATTGCACTGGAAAAAAAACAATTCATAATCATAAAGGTACAGGATAAGAACTAAAGAATATTAATATTCAAGTACAGACTACATAGACGATACGAAAAACAT] [+] EMBL CD139405 [ATCATAATGGTGACAGTTGAGAGAGGAAGAGTAAGAGTAAGTAGAACATAGAAAACAGATATTGAGAATAATCTTTAAAAATGCAGTTCAGATAAATAAAAAAAATATGAGTATTAATAAGAGACAGAAGAACACAAATAAAAGAAAGCGAGGAAACAAGAGAAGAGAGCGTGTACAGTTTACGCAATAATAATCATGATAAAATCCATCGAAGTACAGTGACAGTATGTGAGTATACACAAACGCACACAGAGACAGGTTGAGAAAATTAAATAGAGAATAATAACACTACAGATATACAGCGATTATCTATCTATATAACTAGAAGACAATCGATAATTAGTAAGCAATAACAGATGAGATAACGAATGGAACAACAACAACAACCACACACACAGACGAAAATAGCCAAAACAATAATCAAGTTTGACAAGATCACAATGTATATTA ] [+] EMBL CD179104 [ AGTAGAACATAGAAAACAGATATTGAGAATAATCTTTAAAAATGCAGTTCAGATAAATAAAAAAGATATGAGTATTAATAAGAGACAGAAGAACACAAATAAAAGAAAGCGAGGAAACAAGAGAAGAGAGCGTGTACAGTTTACGCAATAATAATCATGATAAAATCCGTCGAAGTACAGTGACAGTATGTGAGTATACACAAACGCACACAGAGACAGGTTGAGAAAATTAAATAGAGAATAATAACACTACAGACATACAGCGATTATCTATCTATATAACTAGAAGACAATCGATAATTAGTAAGCAATAACAGATGAGATAACGAATGGAACAACAACAACAACCACACACGCAGACGAAAATAGCCAAAACAATAATCAAGTTTGACAAGATCACAATGTATATTACTACTATTTAATTAGTAGGTG ] [+] EMBL CD067357 [ GTGTACAGTTTACGCAATAATAATCATGATAAAATCCGTCGAAGTACAGTGACAGTATGTGAGTATACACAAACGCACACAGAGACAGGTTGAGAAAATTAAATAGAGAATAATAACACTACAGACATACAGCGATTATCTATCTATATAACTAGAAGACAATCGATAATTAGTAAGCAATAACAGATGAGATAACGAATGGAACAACAACAACAACCACACACACAGACGAAAATAGCCAAAACAATAATCAAGTTTGACAAGATCACAATGTATATTACTACTATTTAATTAGTAGGTGTATTATAGCAAAGCCAATATCATTGGTACTAATAGCAGAAGTATGTACATAGGTATGATGCATAAATAAGCAATAATAATAATAATCTAATTGCACTGGAAAAAAAACAATTCATAATCATAAAGGTACAGGATAAGAACTAAAGAATATTAATATTCAAGTACAGACTACATAGACGATACGAAAAACAT] [+] EMBL CD066971 [ GTGTACAGTTTACGCAATAATAATCATGATAAAATCCGTCGAAGTACAGTGACAGTATGTGAGTATACACAAACGCACACAGAGACAGGTTGAGAAAATTAAATAGAGAATAATAACACTACAGACATACAGCGATTATCTATCTATATAACTAGAAGACAATCGATAATT ] consensusID : consensus_9275#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 255 fasta sequence [TGATGAAGAGAAAGAAGTGTTTTTCTGTTGCTGTTGTTGTTGTTGTTCCATTCGTTATCTCATCTGTTATTGCTTACTAATTATCGATTGTCTTCTAGTTATATAGATAGATAATCGCTGTATGTCTGTAGTGTTATTATTCTCTATTTAATTTTCTCAACCTGTCTCTGTGTGCGTTTGTGTATACTCACATACTGTCACTGTACTTCGACGGATTTTATCATGATTATTATTGCGTAAACTGTACACGCTCTC] [+] EMBL CD199276 [TGATGAAGAGAAAGAAGTGTTTTTCTGTTGCTGTTGTTGTTGTTGTTCCATTCGTTATCTCATCTGTTATTGCTTACTAATTATCGATTGTCTTCTAGTTATATAGATAGATAATCGCTGTATGTCTGTAGTGTTATTATTCTCTATTTAATTTTCTCAACCTGTCTCTGTGTGCGTTTGTGTATACTCACATACTGTCACTGTACTTCGACGGATTTTATCATGATTATTATTGCGTAAACTGTACACGCTCTC] [+] EMBL CD199251 [TGATGAAGAGAAAGAAGTGTTTTTCTGTTGCTGTTGTTGTTGTTGTTCCATTCGTTATCTCATCTGTTATTGCTTACTAATTATCGATTGTCTTCTAGTTATATAGATAGATAATCGCTGTATGTCTGTAGTGTTATTATTCTCTATTTAATTTTCTCAACCTGTCTCTGTGTGCGTTTGTGTATACTCACATACTGTCACTGTGCTTCGACGGATTTTATCATGATTAT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9275#0 CATCATCATTCAAGAATTAAATCAATTGCATTTATTACTCATTTAAGTGCATTTGGTTTA 60 consensus_9275#1 ------------------------------------------------------------ consensus_9275#2 ------------------------------------------------------------ consensus_9275#0 AAGAATAAACGACGTCTATCACAATTAACAACCAAAAAATTGCATAAACTAAAATCAAAT 120 consensus_9275#1 ----------------------------------------------------------AT 2 consensus_9275#2 ------------------------------------------------------------ consensus_9275#0 CCTACTAGTCCTAATGATGATTATAACAATAATCATAATTATTATAATAAATCTGGTCAA 180 consensus_9275#1 CATAATGGTGACAGTTGAGAGAGGAAGAGTAAGAGTAAGTAGAACATAGAAAACAGATAT 62 consensus_9275#2 ------------------------------------------------------------ consensus_9275#0 TTAAATCCATTACCAATTACAGAAGTTT-ATGAATCAGAAAGTTATCATAATCCAAATAT 239 consensus_9275#1 TGAGAATAATCTTTAAAAATGCAGTTCAGATAAATAAAAAAAATATGAGTATT--AATAA 120 consensus_9275#2 ------------------------------------------------------------ consensus_9275#0 TATATCAGATAATTTTAATTTGAACACAATAGAATCATTTGATAATGATTACTTTTTATA 299 consensus_9275#1 GAGA-CAGAAGAACACAAATAAAAGAAAGCGAGGAAACAAGAGAA-GAGAGCG---TGTA 175 consensus_9275#2 ------------------------------------------------------------ consensus_9275#0 TAGTTTACAAACAGCTGTATTCAATGGTTTTGTTCCATCAAATCCATTAAATCAACAATA 359 consensus_9275#1 CAGTTTAC--GCAATAATAATCA-TGATAAAATCCGTCGAAGTACAGTGA--CAGTA-TG 229 consensus_9275#2 ------------------------------------------------------------ consensus_9275#0 TACATAT-CATGATTATTATAGAATGCCAGGTCGTCAGACAATACCAACTACAACTGCAA 418 consensus_9275#1 TGAGTATACACAAACGC-ACACAGAGACAGGTTG----AGAAAATTAAATAGAG----AA 280 consensus_9275#2 ------------------------------------------------------------ consensus_9275#0 TAACATCAATACTTCATGAAAAGTTCAACCAATCATCATTTGGTGAAGATTTAAGTTTAG 478 consensus_9275#1 TAATAACACTAC------AGACATACAGCGATTATCTATCT-------ATATAA--CTAG 325 consensus_9275#2 ------------------------------------------------------------ consensus_9275#0 GCAACAATCAATTAACAACACCATCAACTGGATATTATGCATCGAATAGAAGTTCTAGAG 538 consensus_9275#1 AAGACAATCGATAATTAGTA--AGCAATAACAGATGAGATAACGAATGGAACAACAACAA 383 consensus_9275#2 ------------------------------------------------------------ consensus_9275#0 TATTTTCACCTGAGTACAATATTAATAGTAATGATAACAGTAATCGTTTTAAATTTCCCC 598 consensus_9275#1 CAACCACACACACAGACGAAA---ATAGCCAAAACAATAATCAA-GTTTGACAAGATCAC 439 consensus_9275#2 -------------------------TGATGAAGAGAAAGAAGTGTTTTTCTGTTGCTGTT 35 * * * ** *** consensus_9275#0 CACCTGGTCCACCAGTTGCTGGTTGGGTTAACCAATTTATTATCAGAACAAACACGCTTG 658 consensus_9275#1 AATGTATATTACTACT-----ATTTAATTAGTAGGTGTATTAT---AGCAAAGCC----- 486 consensus_9275#2 GTTGTTGTTGTTCCATTCGTTATCTCATCTGTTATTGCTTACTAATTATCGATTGTCTTC 95 * * * * * * * * consensus_9275#0 AAAATTCATTGCCTT-CATTATCTAATGTGAATACAAAAACATCAT-CATCG-TCACCAG 715 consensus_9275#1 -AATATCATTGGTAC-TAATAGCAGAAGTATGTACATAGGTATGATGCATAAATAAGCAA 544 consensus_9275#2 TAGTTATATAGATAGATAATCGCTG-TATGTCTGTAGTGTTATTATTCTCTATTTAATTT 154 * ** * * * * * * * ** ** * * * consensus_9275#0 TGACAAACATAATATCGTTGAA-TGAAAGGCGAACACATCA--GTTACAACAACA-ACAA 771 consensus_9275#1 TAATAATAATAATCTAATTGCACTGGAAAAAAAACAATTCATAATCATAAAGGTACAGGA 604 consensus_9275#2 TCTCAACCTGTCTCTGTGTGCGTTTGTGTATACTCACAT----ACTGTCACTGTACTTCG 210 * ** * * ** * ** * * * consensus_9275#0 CAGCAACAGAAAAACACTTCTTTCTCTTCATC-ATTACATAATACACCTTCAAATCATTC 830 consensus_9275#1 TAAGAACTAAAGAATATTAATATTCAAGTACAGACTACATAGACGATACGAAAAACAT-- 662 consensus_9275#2 ACGGATTTTATCATGATTATTATT---GCGTAAACTGTACACGCTCTC------------ 255 * * * * * * * * * * * consensus_9275#0 ACCAATCACAGCGATTGATATTATTGGTTTATCGAGTTCTATTACTATACCAAGTAGATC 890 consensus_9275#1 ------------------------------------------------------------ consensus_9275#2 ------------------------------------------------------------ consensus_9275#0 TATTTCATCTGTACCACCATCTCCACAAAACACAGCCAACAGATATG 937 consensus_9275#1 ----------------------------------------------- consensus_9275#2 ----------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||