These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9276#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1222 fasta sequence [AATGGACATTTTGAATCATATTTCCACATAAACCATGCATCTGAGCTTGCTGAGCACTAGGTAGTACACAGTTTGACATCACAGTGCTTTGAGGTTGATAGCGTGGATCATGCTGAAATATATCGGAGCAATATATAGTTTGTAAATGCGGATTGATAGACGAATATTCAGCAGGAATACGTGTGCTATATTCTATGGAGGGTCGGAAATGTGTTACAGAAACTGGATGCACGCCGAGACTGACCCGTTGAGAGTCCGCCTTTTGTTGATTAAACGTGCTGATACCGGTTATTTTAGTGCAAACCTGATCTTGAGTTGCAGTTACGTCTCTACAGTCCGCTGCAGATTCATGTAGTTGAGTAACCTCATGTACATTCTCTGGGATGCTTAACTTTGTAACCGCTACATCTTTAACGTCGATAGAACCACACGACTCTTTAGTGCGTACAGGAGATGGGACCCGCAGTGTTTTTTTATCGGTAGATGAATCAATGTCAGATACATTTTGTCGGACAGCAGAATACCGTTTTGGAACTCTTTCTCCACGTCTTACTTGTTCACGGATGTGACTTGAGTGCTTTATTACCCGAGGTTTGTAAACTCTGCTACTTTTTGTGTTTACTGGAGCCACG-TTAATAACCTGTTTCTTATGAACATAT-TGATGGTTTGAGACTGGGTGGTTTGACGAGTCTCCTCTATTTCTTCTGGGAAGATTGAAGCTGGATGTGTAGTACGAATGGTTTGAACCCTGTTGATGTTTATGATGTGAGTCATATGTGCTAGTTGGATAGACAGGCTTCGTATCAAGAGTTTGAGTAGGGTGACTACGACGCACATTGGGACCAGATACATAATCTTCTTTTATGAGCCTTGAAGAAACCTGAGTTTGAAACTCGTCCGTAACTGAATCTTTCCGTGTGGAAAAATTGCGTTCATGGCAGTCACTCTTTGAAAAGCGACCATAACCACTGTACCTAATGCTGGAGTATGTGATGCTTTTTCCTTGGGTTCCAGTAGAACTTTTTTGGCTTTCGTTACCGCATAACACACTGCTTCGCACTTTAGTACCGGTTACTTGACTCGGTTGATGTGAAGAATGGTATGTCTTATTAGTCTCGACGGGAATGGAGGTTGTCATAGGGACGTTACTTCGATTATTAGATTCAGACCTGTTGTCAGATGGGCATATGTTTTCTTTACGAATATCGTACCCATACCTCCA] [-] EMBL CD146193 [AATGGACATTTTGAATCATATTTCCACATAAACCATGCATCTGAGCTTGCTGAGCACTAGGTAGTACACAGTTTGACATCACAGTGCTTTGAGGTTGATAGCGTGGATCATGCTGAAATATATCGGAGCAATATATAGTTTGTAAATGCGGATTGATAGACGAATATTCAGCAGGAATACGTGTGCTATATTCTATGGAGGGTTGGAAATGTGTTACAGAAACCGGATGCACGCCGAGACTGACCCGTTGAGAGTCCGCTTTTTGTTGATTAAACGTGCTGATACCGGTTATTTTAGTGCAAACCTGATCTTGAGTTGCAGTTACGTCTCTACAGTCCGCTGCAGATTCATGTAGTTGAGTAACCTCATGTACATTCTCTGGGATGCTTAACTTTGTAACCGCTACATCTTTAACGTCGATAGAACCACACGACT ] [-] EMBL BG931472 [ TCGGAAATGTGTTACAGAAACTGGATGCACGCCGAGACTGACCCGTTGAGAGTCCGCCTTTTGTTGATTAAACGTGCTGATACCGGTTATTTTAGTGCAAACCTGATCTTGAGTCGCAGTTACGTCTCTACAGTCCGCTGCAGATTCATGTAGTTGAGCAACATCATGTACATTCTCTGGGATGCTTAACTTTGTAACCGCTACATCTCTAACGTCGATAGAACCACACGACTCTTTAGTGCGTACAGGAGATGGGAC ] [-] EMBL BG931464 [ TCGGAAATGTGTTACAGAAACTGGATGCACGCCGAGACTGACCCGTTGAGAGTCCGCCTTTTGTTGATTAAACGTGCTGATACCGGTTATTTTAGTGCAAACCTGATCTTGAGTTGCAGTTACGTCTCTACAGTCCGCTGCAGATTCATGTAGTTGAGTAACCTCATGTACATTCTCTGGGATGCTTAACTTTGTAACCGCTACATCTTTAACGTCGATAGAACCACACGACTCTTTAGTGCGTACAGGAGATGGGAC ] [-] EMBL CD114812 [ TCTCTGGGATGCTTAACTTTGTAACCGCTACATCTTTAACGTCGATAGAACCACACGACTCTTTAGTGCGTACAGGAGATGGGAGCCGCAGTGTTTTTTTATCGGTAGATGAATCAATGTCAGATACATTTTGTCGGACAGCAGAATACCGTTTTGGAACTCTTTCTCCACGTCTTACTTGTTCACGGATGTGACTTGAGTGCTTTATTACCCGAGGTTTGTAAACTCTGCTACTTTTTGTGTTTACTGGAGCCACG TTAATAACCTGTTTCTTATGAACATAT TGATGGTTTGAGACTGGGTGGTTTGACGAGTCTCCTCTATTTCTTCTGGGAAGATTGAAGCTGGATGTGTAGTACGAATGGTTTGAACCCTGTTGATGTTTATGATGTGAGTCATATGTGCTAGTTGGATAGACAGGCTTCGTATCAAGAGTTTGAGTAGGGTGACTACGACGCACATTGGGACCAGATACATAATCT ] [+] EMBL CD156268 [ GTCGATAGAACCACACGACTCTTTAGTGCGTACAGGAGATGGGAGCCGCAGTGTTTTTTTATCGGTAGATGAATCAATGTTAGATACATTTTGTCGGACAGCAGAATACCGTTTTGGAACTCTTTCTCCACGTCTTACTTGTTCACGGATGTGACTTGAGTGCTTTATTACCCGAGGTTTGTAAACTCTGCTACTTTTTGTGTTTACTGGAGCCACG TTAATAACCTGTTTCTTATGAACATAT TGATGGTTTGAGACTGGGTGGTTTGACGAGTCTCCTCTATTTCTTCTGGGAAGATTGAAGCTGGATGTGTAGTATGAATGGTTTGAACCCTGTTGATGTTTATGATGTGAGTCATATGTGCTAGTTGGATAGACAGGCTTCGTATCAAGAGTTTGAGTAGGGTGACTACGACGCACATTGGGACCAGATACATAATCTTCTTTTATGAGCCTTGAAGAAACCTGAGTTTGAAACTCGTCCGTAACTGAATCTTTCCGTGTGGAAAAATTGCGTTCATGGCAGTCACTCTTTGAAAAGCGACCATAACCACTGTACCTAATGCTGGAGTATGTGATGCTTTTTCCTTGGGTTCCAGTAGAACTTTTTTGGCTTT ] [-] EMBL CD181327 [ TGTGNTTACT GAG CACGTTTTATAACCTGTTTC TATG ACATATGNNAT GTTTGAGACTGGGT GTTTGACGAGTCTCTNCTATTTCTTCTGGGAAGATTGAAGCTGGATGTGTAGTACGAATGGTTTGAACCCTGTTGATGTTTATGATGTGAGTCATATGTGCTAGTTGGATAGACAGGCTTCGTATCAAGAGTTTGAGTAGGGTGACTACGACGCACATTGGGACCAGATACATAATCTTCTTTTATGAGCCTTGAAGAAACCTGAGTTTGAAACTCGTCCGTAACTGAATCTTTCCGTGTGGAAAAATTGCGTTCATGGCAGTCACTCTTTGAAAAGCGACCATAACCACTGTACCTAATGCTGGAGTATGTGATGCTTTTTCCTTGGGTTCCAGTAGAACTTTTTTGGCTTTCGTTACCGCATAACACACTGCTTCGCACTTTAGTACCGG ] [+] EMBL CD202410 [ ATGATGAGAGTCATATGCGCTAGTGGGATACACACGCTTCGTATCAAGAGTTTGAGTAGGGAGTCTACCACGCACTTTGGGACCAGACACATAATCTTCTTTTATGAGCCTGGAAAAAACCTGAGTTGGAAACTCGTCCGTAACTGAATCTTTCCGTGTGGAAAAATGGCGTTCATGGCAGTCACTCTTTGAAAAGCGACCATAACCACTGTACCTAATGCTGGAGTATGTGATGCTTTTTCCTTGGGTTCCAGTAGAACTTTTTTGGCTTTCGTTACCGCATAACACACTGCTTCGCACTTTAGTACCGGTTACTTGACTCGGTTGATGTGAAGAATGGTATGTCTTATTAGTCTCGACGGGAATGGAGGTTGTCATAGGGACGTTAC ] [-] EMBL CD140703 [ GTGACTACGACGCACATTGGGACCAGATACATAATCTTCTTTTATGAGCCTTGAAGAAACCTGAGTTTGAAACTCGTCCGTAACTGAATCTTTCCGTGTGGAAAAATTTCGTTCATGGCAGTCACTCTTTGAAAAGCGACCATAACCACTGTACCTAATGCTGGAGTATGTGATGCTTTTTCCTTGGGTTCCAGTAGAGCTTTTTTGGCTTTCGTTACCGCATAACACACTGCTTCGCACTTTAGTACCGGTTACTTGACTCGGTTGATGTGAAGAATGGTATGTCTTATTAGTCTCGACGGGAATGGAGGTTGTCATAGGGACGTTACTTCGATTATTAGATTCAGACCTGTTGTCAGATGGGCATATGTTTTCTTTACGAATATCGTACCCATACCTCCA] consensusID : consensus_9276#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 478 fasta sequence [CTTTTGTTGATTAAACGTGCTGATACCGGTATTTTAGTGCAAACCTGATCTTGAGTTGCAGTACGTCTCTACAGTCCGCTGCAGAATCATGTAGTTGAGTAACCTCATGTACAATCTCTGGGATGCTTAACTTTGTAACCGCTACATCTTTAACGTCGATAGAACCACACGACTCTTTAGTGCGTACAGGAGATGGGAGCCGCAGTGTTTTTTTATCGGTAGATGAATCAATGTTAGATACATTTGTCGGACAGCAGAATACCGTTTTGGAACTCTTTCTCCACGTCTTACTTGTTCACGGATGTGACTTGAGTGCTTTATTACCCGAGGTTTGTAAACTCTGCTACCTTTTGTGTTTACTGGAGCCACGTTAATAACCTTTTTCTTATGAACATATTGATGGTTTGAGACTGGGTGGTTTGACGAGTCTCCTCTATTCCTTCTGGGAAGATTGAAGCTGGATGTGNTAACGTGCCGA] [-] EMBL AW061392 [CTTTTGTTGATTAAACGTGCTGATACCGGTATTTTAGTGCAAACCTGATCTTGAGTTGCAGTACGTCTCTACAGTCCGCTGCAGAATCATGTAGTTGAGTAACCTCATGTACAATCTCTGGGATGCTTAACTTTGTAACCGCTACATCTTTAACGTCGATAGAACCACACGACTCTTTAGTGCGTACAGGAGATGGGAGCCGCAGTGTTTTTTTATCGGTAGATGAATCAATGTTAGATACATTTGTCGGACAGCAGAATACCGTTTTGGAACTCTTTCTCCACGTCTTACTTGTTCACGGATGTGACTTGAGTGCTTTATTACCCGAGGTTTGTAAACTCTGCTACCTTTTGTGTTTACTGGAGCCACGTTAATAACCTTTTTCTTATGAACATATTGATGGTTTGAGACTGGGTGGTTTGACGAGTCTCCTCTATTCCTTCTGGGAAGATTGAAGCTGGATGTGNTAACGTGCCGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9276#0 AATGGACATTTTGAATCATATTTCCACATAAACCATGCATCTGAGCTTGCTGAGCACTAG 60 consensus_9276#1 ------------------------------------------------------------ consensus_9276#0 GTAGTACACAGTTTGACATCACAGTGCTTTGAGGTTGATAGCGTGGATCATGCTGAAATA 120 consensus_9276#1 ------------------------------------------------------------ consensus_9276#0 TATCGGAGCAATATATAGTTTGTAAATGCGGATTGATAGACGAATATTCAGCAGGAATAC 180 consensus_9276#1 ------------------------------------------------------------ consensus_9276#0 GTGTGCTATATTCTATGGAGGGTCGGAAATGTGTTACAGAAACTGGATGCACGCCGAGAC 240 consensus_9276#1 ------------------------------------------------------------ consensus_9276#0 TGACCCGTTGAGAGTCCGCCTTTTGTTGATTAAACGTGCTGATACCGGTTATTTTAGTGC 300 consensus_9276#1 -------------------CTTTTGTTGATTAAACGTGCTGATACCGGT-ATTTTAGTGC 40 ****************************** ********** consensus_9276#0 AAACCTGATCTTGAGTTGCAGTTACGTCTCTACAGTCCGCTGCAGATTCATGTAGTTGAG 360 consensus_9276#1 AAACCTGATCTTGAGTTGCAGT-ACGTCTCTACAGTCCGCTGCAGAATCATGTAGTTGAG 99 ********************** *********************** ************* consensus_9276#0 TAACCTCATGTACATTCTCTGGGATGCTTAACTTTGTAACCGCTACATCTTTAACGTCGA 420 consensus_9276#1 TAACCTCATGTACAATCTCTGGGATGCTTAACTTTGTAACCGCTACATCTTTAACGTCGA 159 ************** ********************************************* consensus_9276#0 TAGAACCACACGACTCTTTAGTGCGTACAGGAGATGGGACCCGCAGTGTTTTTTTATCGG 480 consensus_9276#1 TAGAACCACACGACTCTTTAGTGCGTACAGGAGATGGGAGCCGCAGTGTTTTTTTATCGG 219 *************************************** ******************** consensus_9276#0 TAGATGAATCAATGTCAGATACATTTTGTCGGACAGCAGAATACCGTTTTGGAACTCTTT 540 consensus_9276#1 TAGATGAATCAATGTTAGATACATTT-GTCGGACAGCAGAATACCGTTTTGGAACTCTTT 278 *************** ********** ********************************* consensus_9276#0 CTCCACGTCTTACTTGTTCACGGATGTGACTTGAGTGCTTTATTACCCGAGGTTTGTAAA 600 consensus_9276#1 CTCCACGTCTTACTTGTTCACGGATGTGACTTGAGTGCTTTATTACCCGAGGTTTGTAAA 338 ************************************************************ consensus_9276#0 CTCTGCTACTTTTTGTGTTTACTGGAGCCACGTTAATAACCTGTTTCTTATGAACATATT 660 consensus_9276#1 CTCTGCTACCTTTTGTGTTTACTGGAGCCACGTTAATAACCTTTTTCTTATGAACATATT 398 ********* ******************************** ***************** consensus_9276#0 GATGGTTTGAGACTGGGTGGTTTGACGAGTCTCCTCTATTTCTTCTGGGAAGATTGAAGC 720 consensus_9276#1 GATGGTTTGAGACTGGGTGGTTTGACGAGTCTCCTCTATTCCTTCTGGGAAGATTGAAGC 458 **************************************** ******************* consensus_9276#0 TGGATGTGTAGTACGAATGGTTTGAACCCTGTTGATGTTTATGATGTGAGTCATATGTGC 780 consensus_9276#1 TGGATGTGNTA-ACGTGCCGA--------------------------------------- 478 ******** *** * consensus_9276#0 TAGTTGGATAGACAGGCTTCGTATCAAGAGTTTGAGTAGGGTGACTACGACGCACATTGG 840 consensus_9276#1 ------------------------------------------------------------ consensus_9276#0 GACCAGATACATAATCTTCTTTTATGAGCCTTGAAGAAACCTGAGTTTGAAACTCGTCCG 900 consensus_9276#1 ------------------------------------------------------------ consensus_9276#0 TAACTGAATCTTTCCGTGTGGAAAAATTGCGTTCATGGCAGTCACTCTTTGAAAAGCGAC 960 consensus_9276#1 ------------------------------------------------------------ consensus_9276#0 CATAACCACTGTACCTAATGCTGGAGTATGTGATGCTTTTTCCTTGGGTTCCAGTAGAAC 1020 consensus_9276#1 ------------------------------------------------------------ consensus_9276#0 TTTTTTGGCTTTCGTTACCGCATAACACACTGCTTCGCACTTTAGTACCGGTTACTTGAC 1080 consensus_9276#1 ------------------------------------------------------------ consensus_9276#0 TCGGTTGATGTGAAGAATGGTATGTCTTATTAGTCTCGACGGGAATGGAGGTTGTCATAG 1140 consensus_9276#1 ------------------------------------------------------------ consensus_9276#0 GGACGTTACTTCGATTATTAGATTCAGACCTGTTGTCAGATGGGCATATGTTTTCTTTAC 1200 consensus_9276#1 ------------------------------------------------------------ consensus_9276#0 GAATATCGTACCCATACCTCCA 1222 consensus_9276#1 ---------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||