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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9287#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1010 fasta sequence
[GCCATTTATTCGGCACGCAGGGAGACGATTTATTAATCATTGATGTTAATGTAAAAACTGCATAAAAAAGATTATTCATAGTTATTTGAATAAATGGTGTTCTAAAAATTTTGATAATGATGAGATCGTAATTACCATTTTGTCACTGTATCCAAGTGAATACTCATACATATTATATATATATATATATATATATATATATATATATATAGTATTATAATCTTGATTTCCAGTTATTTTCATTGAAATAAGTGTGCATATTATTAAGCTATAACTTCATCGTAATGATAGATAGCAAGAGTAATTATTTGTGTTATTTCTAACTAAATATATACCTATTATTATTATTACTACACATTGTGTTCACATTCAGATCAATGATTACCTGTAACTACTATAGTTCTTCCTGTCAATTTGTGTGTACGTGTGTGTGTGTGTATATGTCATACAAAATTAATTTCATATAGAAGAAAATTGTATTTTTATTAAATTTTACTGTAATAAGAATAATACTCATAACTGCTCCCATCAGATTCTTTTTGCTCTAATGTTTTTTTTCTTTTTTTGTTAATTCTCGTTTGTTTTCTCGTTTTTTTAGATAAATTACAGTGTTTCTCCCATAGTTATTTTTTTTTCGGAAAAACAAAAAAAAATTATTTTTGGGCTGTGTTGTATTTTAATTAATAATTATTATTATCATTGAATAAAAATTGAAATTTTTTGCACCTTTTCCACGTATATGATTATTAGTTCACTGTCAAGAAGGTGTCCAGTAGAGAACGATAGAAAAGAAAAAAAAGTGAGGAGTATAATGTGCAAAAAGAGAGTGAGAGGGAGGGAGACGGGTGACTATTCATTGAAACACTATTGATTTATTATCATAATTTCATTTCTT-AAAAAAACAGT-AAAATCAAACT-ATCACTT-ATCTCAC-ATCAGAT-ATCATTCTTTC-TCA-TTCGTT--ACTTTTCATTA-CA-TTCTCTCTATCTC--TTTTTTG-ATA--CTATGTACGAATAATT]
[+] EMBL CD081792 [GCCATTTATTCGGCACGCAGGGAGACGATTTATTAATCATTGATGTTAATGTAAAAACTGCATAAAAAAGATTATTCATAGTTATTTGAATAAATGGTGTTCTAAAAATTTTGATAATGATGAGATCGTAATTACCATTTTGTCACTGTATCCAAGTGAATACTCATACATATTATATATATATATATATATATATATATATATATATATAGTATTATAATCTTGATTTCCAGTTATTTTCATTGAAATAAGTGTGCATATTATTAAGCTATAACTTCATCGTAATGATAGATAGCAAGAGTAATTATTTGTGTTATTTCTAACTAAATATATACCTATTATTATTATTACTACACATTGTGTTCACATTCAGATCAATGATTACCTGTAACTACTATAGTTCTTCCTGTCAATTTGTGTGTACGTGTGTGTGTGTGTATATGTCATACAAAATTAATTTCATATAGAAGAAAATTGTATTTTTATTAAATTTTACTGTAATAAGAATAATACTCATAACTGCTCCCATCAGATTCTTTTTGCTCTAATGTTTTTTTTCTTTTTTTGTTAATTCTCGTTTGTTTTCTCGTTTTTTTAGATAAATTACAGTGTTTCTCCCATAGTTATTTTTTTTTCGGAAAAACAAAAAAAAATTATTTTTGGGCTGTGTTGTATTTTAATTAATAATTATTATTATCATTGAATAAAAATTGAAATTTTTTGCACCTTTTCCACGTATATGATTATTAGTTCACTGTCAAGAAGGTGTCCAGTAGAGAACGATAGAAAAGAAAAAAAAGTGAGGAGTATAATGTGCAAAAAGAGAGTGAGAGGGAGGGAGACGGGTGACTATTCATTGAAACACTATTGATTTATTATCATAATTTCATTTCTT AAAAAAACAGT AAAATCAAACT ATCACTT ATCTCAC ATCAGAT ATCATTCTTTC TCA TTCGTT ACTTTTCATTA CA TTCTCTCTATCTC TTTTTTG ATA CTATGTACGAATAATT]
[-] EMBL CD075523 [ TATATATATATATATATATATATATATATATATAGTATTATAATCTTGATTTCCAGTTATTTTCATTGAAATAAGTGTGCATATTATTAAGCTATAACTTCATCGTAATGATAGATAGCAAGAGTAATTATTTGTGTTATTTCTAACTAAATATATACCTATTATTATTATTACTACACATTGTGTTCACATTCAGATCAATGATTACCTGTAACTACTATAGTTCTTCCTGTCAATTTGTGTGTACGTGTGTGTGTGTGTATATGTCATACAAAATTAATTTCATATAGAAGAAAATTGTATTTTTATTAAATTTTACTGTAATAAGAATAATACTCATAACTGCTCCCATCAGATTCTTTTTGCTCTAATGTTTTTTTTCTTTTTTTGTTAATTCTCGTTTGTTTTCTCGTTTTTTTAGATAAATTACAGTGTTTCTCCCATAGTTATTTTTTTTTCGGAAAAACAAAAAAAAATTATTTTTGGGCTGTGTTGTATTTTAATTAATAATTATTATTATCATTGAATAAAAATTGAAATTTTTTGCACCTTTTCCACGTATATGATTATTAGTTCACTGTCAAGAAGGTGTCCAGTAGAGAACGATAGAAAAGAAAAAAAAGTGAGGAGTATAATGTGCAGAGAGAGAGTGAGAGGGAGGGAGACGGGTGACTATTCATTGAAACACTATTGATTTATTATCATAATTTCATTTCTTAAAAAAAACAGTAAAAATCAAACTAATCACTTAATCTCACAATCAGATGTTCATTCTTTCTTCAGTTCGTTAAATTTTTCATTACCATTTCTCTCTATCTCTTTTTTTTGTATACCCTATGTAaaggga ]
consensusID : consensus_9287#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 773 fasta sequence
[TGAAGAGCATACTCCCTTACTACAAAGTGATACAATTCAAAACCATCATGTTTGTAGCGATAGTGCCATACATAATTCCCCCCTGATATCAGGACGTTCTGAAATTCATTTTTCATTACAAGTTGATGATGATGAAATGTTACGTTCAGATTTAGTTGATCTAAAACAATCATCTGGTCGATCAAGTTCAAGTCCACCGGCCATTGAATCTTTAAATACTTGTAATGATTTAAATAATGATCCTTTCAATATATTTCCATCAACATCATCATCACATTTAATTCAACAAAAGTTATCTCCAAATTCATTAGCATCATCTATTGAATCAAAAACAAATATGCTTGAATTACCTCAAATGGCGATCACAGTTACACCAACTATATTATCAGCGCCACCAAAAATGATAACTGAAGATACAGGAGACGATTTATTAATCACTGATGTTAATGTAAAAACTGCATAAAAAAGATTATTCATAGTTATTTGAATAAATGGTGTTCTAAAAATTTTGATAATGATGAGATCGTAATTCCCATTTTGTCACTGTATCCAAGTGAATACTCATACATATTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAGTATTATAATCTTGATTTCCAGTTATTTTCATTGAAATAAGTGTGCATATTATTAAGCTATAACTTCATCGTAATGATAGATAGCAAGAGTAATTATTTGTGTTATTTCTAACTAAATATATACCTATTATTAT]
[+] EMBL CD161446 [TGAAGAGCATACTCCCTTACTACAAAGTGATACAATTCAAAACCATCATGTTTGTAGCGATAGTGCCATACATAATTCCCCCCTGATATCAGGACGTTCTGAAATTCATTTTTCATTACAAGTTGATGATGATGAAATGTTACGTTCAGATTTAGTTGATCTAAAACAATCATCTGGTCGATCAAGTTCAAGTCCACCGGCCATTGAATCTTTAAATACTTGTAATGATTTAAATAATGATCCTTTCAATATATTTCCATCAACATCATCATCACATTTAATTCAACAAAAGTTATCTCCAAATTCATTAGCATCATCTATTGAATCAAAAACAAATATGCTTGAATTACCTCAAATGGCGATCACAGTTACACCAACTATATTATCAGCGCCACCAA ]
[-] EMBL CD161546 [ GAAGAGCATACTCCCTTACTACAAAGTGATACAATTCAAAACCATCATGTTTGTAGCGATAATGCCATACATAATTCCCCCCTGATATCAGGACGTTCTGAAATTCATTTTTCATTACAAGTTGATGATGATGAAATGTTACATTCAGATTTAGTTGATCTAAAACAATCATCTGGTCGATCAAGTTCAAGTCCACCGGCCATTGAATCTTTAAATACTTGTAATGATTTAAATAATGATCCTTTCAATATATTTCCATCAACATCATCATCACATTTAATTCAACAAAAGTTATCTCCAAATTCATTAGCATCATCTATTGAATCAAAAACAAATATGCTTGAATTACCTCAAATGGCGATCACAGTTACACCAACTATATTATCAGCGCCACCAAA ]
[-] EMBL CD076706 [ TGGTCGATCAAGTTCAAGTCCACCGGCCATTGAATCTTTAAATACTTGTAATGATTTAAATAATGATCCTTTCAATATATTTCCATCAACATCATCATCACATTTAATTCAACAAAAGTTATCTCCAAATTCATTAGCATCATCTATTGAATCAAAAACAAATATGCTTGAATTACCTCAAATGGCGATCACAGTTACACCAACTATATTATCAGCGCCCCCAAAAATGATAACTGAAGATACAGGAGACGATTTATTAATCACTGATGTTAATGTAAAAACTGCATAAAAAAGATTATTCATAGTTATTTGAATAAATGGTGTTCTAAAAATTTTGATAATGATGAGATCGTAATTCCCATTTTGTCACTGTATCCAAGTGAATACTCATACATATTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAGTATTATAATCTTGATTTCCAGTTATTTTCATTGAAATAAGTGTGCATATTATTAAGCTATAACTTCATCGTAATGATAGATAGCAAGAGTAATTATTTGTGTTATTTCTAACTAAATATATACCTATTATTAT]
consensusID : consensus_9287#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 747 fasta sequence
[CAANAATTTTGCACGAGGGTTCTTTCTAACTAAATATATACCTATTATTATTATTACTACACATTGTGTTCACATTCAGATCAATGATTACCTGTAACTACTATAGTTCTTCCTGTCAATTTGTAAGTGTGTACGTGTGTGTGTGTGTATATGTCATACAAAATTAATTTCATATAG-AAGAAAATTGTATTTTTATTAAATTTTACTGTAATAAGAATAATACTCATAACTGCTCCCATCAGATTCTTTTTGCTCTAATGTTTTTTTTCTTTTTTTGTTAATTCTCGTTTGTTTTCTCGTTTTTTTAGATAAATTACAGTGTTTCTCCCATAGTTATTTTTTTTTCGGAAAAACAAAAAAAAATTATTTTTGGGCTGTGTTGTATTTTAATTAATAATTATTATTATCATTGAATAAAAATTGAAATTTTTTGCACCTTTTCCATGTATATGATTATTAGTTCACTGTCAAGAAGGTGTCCAGTAGAGAACGATAGAAAAGAAAAAAAAAGTGAGGAGTATAATGTGCAGAGAGAGAATGACAGGGAGGGAGACGGGTGACTATTCATTGAAACACTATTGATTTATTATCATAATTTCATTTCTTAAAAAAAACAGTAAAAATCAAACTAATCACTTAATCTCACAATCAGATATTCATTCTTTCTTCAGTTCGTTTACTTTTTCATTACCATTTCTCTCTATCTCTTTTTTTTGTATACCTATGTAAACGAAATAAATTTCTGTG]
[+] EMBL CD079562 [CAANAATTTTGCACGAGGGTTCTTTCTAACTAAATATATACCTATTATTATTATTACTACACATTGTGTTCACATTCAGATCAATGATTACCTGTAACTACTATAGTTCTTCCTGTCAATTTGTAAGTGTGTACGTGTGTGTGTGTGTATATGTCATACAAAATTAATTTCATATAGCAAGAAAATTGTATTTTTATTAAATTTTACTGTAATAAGAATAATACTCATAACTGCTCCCATCAGATTCTTTTTGCTCTAATGTTTTTTTTCTTTTTTTGTTAATTCTCGTTTGTTTTCTCGTTTTTTTAGATAAATTACAGTGTTTCTCCCATAGTTATTTTTTTTTCGGAAAAACAAAAAAAAATTATTTTTGGGCTGTGTTGTATTTTAATTAATAATTATTATTATCATTGAATAAAAATTGAAATTTTTTGCACCTTTTCCATGTATATGATTATTAGTTCACTGTCAAGAAGGTGTCCAGTAGAGAACGATAGAAAAGAAAAAAAAAGTGAGGAGTATAATGTGCAGAGAGAGAATGACAGGGAGGGAGACGGGTGACTATTCATTGAAACACTATTGATTTATTATCATAATTTCATTTCTTAAAAAAAACAGTAAAAATCAAACTAATCACTTAATCTCACAATCAGATATTCATTCTTTCTTCAGTTCGTTTACTTTTTCATTACCATTTCTCTCTATCTCTTTTTTTTGNATACCTATGTAAACGAAATANATCTCTG ]
[-] EMBL CD073828 [ TTGTGTTCACATTCAGATCAATGATTACCTGTAACTACTATAGTTCTTCCTGTCAATTTGTAAGTGTGTACGTGTGTGTGTGTGTATATGTCATACAAAATTAATTTCATATAG AAGAAAATTGTATTTTTATTAAATTTTACTGTAATAAGAATAATACTCATAACTGCTCCCATCAGATTCTTTTTGCTCTAATGTTTTTTTTCTTTTTTTGTTAATTCTCGTTTGTTTTCTCGTTTTTTTAGATAAATTACAGTGTTTCTCCCATAGTTATTTTTTTTTCGGAAAAACAAAAAAAAATTATTTTTGGGCTGTGTTGTATTTTAATTAATAATTATTATTATCATTGAATAAAAATTGAAATTTTTTGCACCTTTTCCATGTATATGATTATTAGTTCACTGTCAAGAAGGTGTCCAGTAGAGAACGATAGAAAAGAAAAAAAAAGTGAGGAGTATAATGTGCAGAGAGAGAATGAGAGGGAGGGAGACGGGTGACTATTCATTGAAACACTATTGATTTATTATCATAATTTCATTTCTTAAAAAAAACAGTAAAAATCAAACTAATCACTTAATCTCACAATCAGATATTCATTCTTTCTTCAGTTCGTTTACTTTTTCATTACCATTTCTCTCTATCTCTTTTGTTTGTATACCTATGTAAAAAAAATAAATTTCTGT ]
[+] EMBL CD092088 [ CAATGATTACCTGTAACTACTATAGTTCTTCCTGTCAATTTGTAAGTGTGTACGTGTGTGTGTGTGTATATGTCATACAAAATTAATTTCATATAG AAGAAAATTGTATTTTTATTAAATTTTACTGTAATAAGAATAATACTCATA ]
[-] EMBL CD185174 [ AATCACTTAATCTCACAATCAGATATTCATTCTTTCTTCAGTTCGTTTACTTTTTCATTACCATTTCTCTCTATCCCTTTTTTTTGTATACCTATGTAAACGAAATAAATTTCTGTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9287#0 GCCATTTATTCGGCACGCAGGGAGACGATTTATTAATCATTGATGTTAATGTAAAAACTG 60
consensus_9287#2 ------------------------------------------------------------
consensus_9287#1 ------------------------------------------------------------
consensus_9287#0 CATAAAAAAGATTATTCATAGTTATTTGAATAAATGGTGTTCTAAAAATTTTGATAATGA 120
consensus_9287#2 ------------------------------------------------------------
consensus_9287#1 ------------------------------------------------------------
consensus_9287#0 TGAGATCGTAATTACCATTTTGTCACTGTATCCAAGTGAATACTCATACATATTATATAT 180
consensus_9287#2 ------------------------------------------------------------
consensus_9287#1 ------------------------------------------------------------
consensus_9287#0 ATATATATATATATATATATATATATATATAGTATTATAATCTTGATTTCCAGTTATTTT 240
consensus_9287#2 ------------------------------------------------------------
consensus_9287#1 ------------------------------------------------------------
consensus_9287#0 CATTGAAATAAGTGTGCATATTATTAAGCTATAACTTCATCGTAATGATAGATAGCAAGA 300
consensus_9287#2 -------------------------------------------------------CAANA 5
consensus_9287#1 -------------------------------------------------TGAAGAGCATA 11
* *
consensus_9287#0 GTAAT-TATTTGTGTTATTTCTAACTAAATATATACCTATTATTAT---TATTACTACAC 356
consensus_9287#2 ATTTTGCACGAGGGTTCTTTCTAACTAAATATATACCTATTATTAT---TATTACTACAC 62
consensus_9287#1 CTCCCTTACTACAAAGTGATACAATTCAAAACCATCATGTTTGTAGCGATAGTGCCATAC 71
* * * ** * ** * * * ** ** ** * * * **
consensus_9287#0 ATTGTGTTCACATTCAGATCAATGATTACCTGTAACTACTATAGTTCTTCCTGTCAATTT 416
consensus_9287#2 ATTGTGTTCACATTCAGATCAATGATTACCTGTAACTACTATAGTTCTTCCTGTCAATTT 122
consensus_9287#1 ATAAT-TCCCCCCTGATATCAG-GACGTTCTGAAATT----CATTTTTCATTACAAGTTG 125
** * * * * * * **** ** *** ** * * ** * * * **
consensus_9287#0 GT----GTGTACGTGTGTGTGTGTGTATATGTCATACAAAATTAATTTCATATAGAAGAA 472
consensus_9287#2 GTAAGTGTGTACGTGTGTGTGTGTGTATATGTCATACAAAATTAATTTCATATAGAAGAA 182
consensus_9287#1 ATGATGATGAAATGTTACGTTCAGATTTAGTTGATCTAAAACAATCATCTGGTCGATCAA 185
* ** * * ** * ** * ** **** * ** * ** **
consensus_9287#0 AATTGTATTT-----TTATTAAATTTTACTGTAATAAGAATAAT---ACTCATAACTGCT 524
consensus_9287#2 AATTGTATTT-----TTATTAAATTTTACTGTAATAAGAATAAT---ACTCATAACTGCT 234
consensus_9287#1 GTTCAAGTCCACCGGCCATTGAATCTTTAAATACTTGTAATGATTTAAATAATGATCCTT 245
* * *** *** ** ** * *** ** * * ** * *
consensus_9287#0 CCCATCAGATTCTTTTTGCTCTAATGTTTTTTTTCTTTTTTTGTTAATTCTC-----GTT 579
consensus_9287#2 CCCATCAGATTCTTTTTGCTCTAATGTTTTTTTTCTTTTTTTGTTAATTCTC-----GTT 289
consensus_9287#1 TCAATATATTTCCATCAACATCATCATCACATTTAATTCAACAAAAGTTATCTCCAAATT 305
* ** *** * * * * *** ** * ** ** **
consensus_9287#0 TGTTTTCTCGTTTTTTTAGATAAATTACAGTGTTTCTCCCATAGTTATTTTTTTTTCGGA 639
consensus_9287#2 TGTTTTCTCGTTTTTTTAGATAAATTACAGTGTTTCTCCCATAGTTATTTTTTTTTCGGA 349
consensus_9287#1 CATTAGCATCATCTATTGAATCAAAAACAAATATGCTTGAATTACCTCAAATGGCGATCA 365
** * * * ** ** ** *** * ** ** * *
consensus_9287#0 AAAACAAAAAAAAATTATTTTTGG-GCTGTGTTGTATTTTAATTAATAATTATTATTATC 698
consensus_9287#2 AAAACAAAAAAAAATTATTTTTGG-GCTGTGTTGTATTTTAATTAATAATTATTATTATC 408
consensus_9287#1 CAGTTACACCAACTATATTATCAGCGCCACCAAAAATGATAACTGAAGATACAGGAGACG 425
* * * ** **** * * ** ** *** * * ** *
consensus_9287#0 ATTGAATAAAAATTGAAATTTTTTGCACCTTTTCCACGTATATGATTATT---AGTTCAC 755
consensus_9287#2 ATTGAATAAAAATTGAAATTTTTTGCACCTTTTCCATGTATATGATTATT---AGTTCAC 465
consensus_9287#1 ATTTATTAATCACTGATGTTAAT-GTAAAAACTGCATAAAAAAGATTATTCATAGTTATT 484
*** * *** * *** ** * * * * ** * * ******* ****
consensus_9287#0 TGTCAAGAAGGTGTCCAGTAGAGAACGATAGAAAAGAAAAAAAA-GTGAGGAGT----AT 810
consensus_9287#2 TGTCAAGAAGGTGTCCAGTAGAGAACGATAGAAAAGAAAAAAAAAGTGAGGAGT----AT 521
consensus_9287#1 TGAATAAATGGTGTTCTAAAAATTTTGATAATGATGAGATCGTAATTCCCATTTTGTCAC 544
** * * ***** * * * **** * ** * * * * *
consensus_9287#0 AATGTGCAAAAAGAGAGTGAGAGGGAGGG-AGACGGGTGACTATTCATTGAAACAC-TAT 868
consensus_9287#2 AATGTGCAGAGAGAGAATGACAGGGAGGG-AGACGGGTGACTATTCATTGAAACAC-TAT 579
consensus_9287#1 TGTATCCAAGTGAATACTCATACATATTATATATATATATATATATATATATATATATAT 604
* * ** * * * * * * * * * *** ** * * * ***
consensus_9287#0 TGATTTATTATCATAATTTCATTTCT-TAAAAAAA-CAGTAAAA-TCAAACTA-TCACTT 924
consensus_9287#2 TGATTTATTATCATAATTTCATTTCT-TAAAAAAAACAGTAAAAATCAAACTAATCACTT 638
consensus_9287#1 ATATATATATATATATATATATATATATATATATAGTATTATAATCTTGATTT-CCAGTT 663
** *** *** * ** * * ** * * * * ** ** * * ** **
consensus_9287#0 A-TCTCACA-TCAGATAT-CATTCTTTCTC--ATTCGTTA--CTTTTCATTACA--TTCT 975
consensus_9287#2 AATCTCACAATCAGATATTCATTCTTTCTTCAGTTCGTTTACTTTTTCATTACCATTTCT 698
consensus_9287#1 ATTTTCAT--TGAAATAAGTGTGCATATTATTAAGCTATAACTTCATCGTAATGATAGAT 721
* * *** * * *** * * * * * * * ** * * *
consensus_9287#0 CTCTATCTCTTTTTTG---ATAC-TATGTACGAATAATT--------------- 1010
consensus_9287#2 CTCTATCTCTTTTTTTTGTATACCTATGTAAACGAAATAAATTTCTGTG----- 747
consensus_9287#1 AGCAAGAGTAATTATT--TGTGTTATTTCTAACTAAATATATACCTATTATTAT 773
* * ** * * * ***
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||