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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9288#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1075 fasta sequence
[CGAGGACCACCTGAGTTTGGCGCAATGCTTAGAATGCGTGCCCATATTAAGCGAATCGTTAGAAAAGTGATGAGTTCATGTGACTATTTAGAGGTTGATACTCCAATCCTCACTTCAACAGATTGTGAAGGTACTGGTCAGATGTTCGAAGTTCAAGCACCTGCACTTAATGAGACTAGGGAATCTGATAGTTCAAGTGTATATTTAACCGGTAGTGCTCAAATGCATTTGGAATCTCTTGCTTTGGGTTTAAGTAAGGTTTATACATTGAATCCAACATTTCGAGCTGAGAATTCAAATACAAGATATCATCTTGCAGAATTTTATATGCTTGAAGCAGAGTCGATTTACTTAGATAATATTGATTCATTATGTATAGAAATTGAAATGCTTATTAAAAAGATATTAAATGAATGTTTAGAAGTTTATCCTATCTCAGAATGTAATGAACTCAATGCTTTACAAAATGATTTACTGTTGATTCGAACATTCCTTGGTAGTCAATCTGAATCTGATAGTCATTGCAAACGTTTGCTAATTGATTCTGCTCTGGAGCTAAGAGATGTTTTGGAAACAATGCTGAAACAACCGTTTATTCGCATTTCTTATTTTGAAGCCATGAAGTACTTGAATAAAGAAATGGATACAGTTGATCTTACTACTTCAAGACCTCGGGATCTGAACAAAAAAGAGGAGCACAGAATCCTAGATTGGG-TTGGAGGGAATCGTCCTGTCTTTATTACTCATT-TT-CCCATGGAACTTAAACCATTTTACT-GTCAGTCAGTTGACGGTATTAAAGCTGAGTGTGCTGATTTGTTATTTCCAGGGATCGGTGAACTAGTTGGGGCCAGCGTCCGTGAGAATGTTGCTTCTCGTTTACAAACACGCATGAAGTCCAATCGTTCGACAAATCAGTCGGATTGGTACATTAATTTACGTGGTACTGGTAGTGTTCCTCAT-GGTGGTTTTGGTCTTGGCTTTGAGCGCC-TATGCAGTTTG-TTTGGGGATAGCT-ACATTCGAGAT-C-ATAGCA-TCCCAAG-AATACGAATAAAATTATTGTCTAAAAAAAAAAAAAAAA]
[+] EMBL CD082130 [CGAGGACCACCTGAGTTTGGCGCAATGCTTAGAATGCGTGCCCATATTAAGCGAATCGTTAGAAAAGTGATGAGTTCATGTGACTATTTAGAGGTTGATACTCCAATCCTCACTTCAACAGATTGTGAAGGTACTGGTCAGATGTTCGAAGTTCAAGCACCTGCACTTAATGAGACTAGGGAATCTGATAGTTCAAGTGTATATTTAACCGGTAGTGCTCAAATGCATTTGGAATCTCTTGCTTTGGGTTTAAGTAAGGTTTATACATTGAATCCAACATTTCGAGCTGAGAATTCAAATACAAGATATCATCTTGCAGAATTTTATATGCTTGAAGCAGAGTCGATTTACTTAGATAATATTGATTCATTATGTATAGAAATTGAAATGCTTATTAAAAAGATATTAAATGAATGTTTAGAAGTTTATCCTATCTCAGAATGTAATGAACTCAATGCTTTACAAAATGATTTACTGTTGATTCGAACATTCCTTGGTAGTCAATCTGAATCTGATAGTCATTGCAAACGTTTGCTAATTGATTCTGCTCTGGAGCTAAGAGATGTTTTGGAAAC ATGCTGAAAC ACCGTTTATTCGC ]
[+] EMBL CD082090 [ cgaggaCAAATACAAGATATCATCTTGCAGAATTTTATATTCTTGAAGTAGAGTCGACTTACTTAGATAATATTGATTCATTATGTATAGAAATTGAAATGCTTATTAAAAAGATATTAAATGAATGTTTAGAAGTTTATCCTATCTCAGAATGTAATGAACTCAATGCTTTACAAAATGATTTACTGTTGATTCGAACATTCCTTGGTAGTCAATCTGAATCTGATAGTCATTGCAAACGTTTGCTAATTGATTCTGCTCTGGAGCTAAGAGATGTTTTGGAAACAATGCTGAAACAACCGTTTATTCGCATTTCTTATTTTGAAGCCATGAAGTACTTGAATAAAGAAATGGATACAGTTGATCTTACTACTTCAAGACCTCGGGATCTGAACAAAAAAGAGGAGCACAGAATCCTAGATTGGG TTGGAGGGAATCGTCCTGTCTTTATTACTCATT TT CCCATGGAACTTAAACCATTTTACT GTCAGTCAGTTGACGGTATTAAAGCTGAGTGTGCTGATTTGTTATTTCCAGGGATCGGTGAACTAGTTGGGGCCAGCGTCCGTGAGAATGTTGCTTCTCGTTTAC AACACGCATGAAGTCCAATCGTTCGACAAATCAGTCGGATTGGTACATTAATTTACGTGGTACTGGTAGTNGTCCTCATGGGTGGTNTTGGTCTTGGCTTTGAGCGCC TATGCAGTTTG TTTGGGGATAGCT ACATTCGAGAT C ATAGCA TCCCAAG AATACGAAT ]
[+] EMBL AI740370 [ TAATGAACTCAATGCTTTACAAAATGATTTACTGTTGATTCGAACATTCCTTGGTAGTCAATCTGAATCTGATAGTCATTGCAAACGTTTGTTAATTGATTCTGCTCTGGAGCTAAGAGATGTTTTGGAAACAATGCTGAAACAACCGTTTATTCGCATTTCTTATTTTGAAGCCATGAAGTACTTGAATAAAGAAATGGATACAGTTGATCTTACTACTTCAAGACCTCGGGATCTGAACAAAAAAGAGGAGCACAGAATCCTAGATTGGG TTGGAGGGAATCGTCCTGTCTTTATTACTCATT TT CCCATGGAACTTAAACCATTTTACT GTCAGTCAGTTGACGGTATTAAAGCTGAGTGTGCTGATTTGTTATTTCCAGGGATCGGTGAACTAGTTGGGGCCAGCGTCCGTGAGAATGTTGCTTCTCGTTTACAAACACGCATGAAGTCCAATCGTTCGACAAATCAGTCGGATTGGAACATTAATTTACGGGGGACTGGTAGTGTTCCTCAT GGGGGTTTGGGTCTGGGCTTg ]
[-] EMBL CD075745 [ GCAAACGTTTGCTAATTGATTCTGCTCTGGAGCTAAGAGATGTTTTGGAAACAATGCTGAAACAACCGTTTATTCGCATTTCTTATTTTGAAGCCATGAAGTACTTGAATAAAGAAATGGATACAGTTGATCTTACTACTTCAAGACCTCGGGATCTGAACAAAAAAGAGGAGCACAGAATCCTAGATTGGG TTGGAGGGAATCGTCCTGTCTTTATTACTCATT TT CCCATGGAACTTAAACCATTTTACT GTCAGTCAGTTGACGGTATTAAAGCTGAGTGTGCTGATTTGTTATTTCCGGGGATCGGTGAACTAGTTGGGGCCAGCGTCCGTGAGAATGTTGCTTCTCGTTTACAAACACGCATGAAGTCCAATCGTTCGACAAATCAGTCGGATTGGTACATTAATTTACGTGGTACTGGTAGTGTTCCTCAT GGTGGTTTTGGTCTTGGCTTTGAGCGCCTTATGCAGTTTGTTTTGGGGATAGCTAACATTCGAGATACAATAGCATTCCCAAGAAATACGAATAAAA ]
[-] EMBL CD075705 [ AGCTAAGAGATGTTTTGGAAACAATGCTGAAACAACCGTTTATTCGCATTTCTTATTTTGAAGCCATGAAGTACTTGAATAAAGAAATGGATACAGTTGATCTTACTACTTCAAGACCTCGGGATCTGAACAAAAAAGAGGAGCACAGAATCCTAGATTGGG TTGGAGGGAATCGTCCTGTCTTTATTACTCATT TT CCCATGGAACTTAAACCATTTTACT GTCAGTCAGTTGACGGTATTAAAGCTGAGTGTGCTGATTTGTTATTTCCAGGGATCGGTGAACTAGTTGGGGCCAGCGTCCGTGAGAATGTTGCTTCTCGTTTACAAACACGCATGAAGTCCAATCGTTCGACAAATCAGTCGGATTGGTACATTAATTTACGTGGTACTGGTAGTGTTCCTCAT GGTGGTTTTGGTCTTGGCTTTGAGCGCCTTATGCAGTTTGTTTTGGGGATAGCTAACATTCGAGATACAATAGCATTCCCAAGAAATACGAATAAAA ]
[+] EMBL CD189480 [ ATGTTTTGGAAACAATGCTGAAACAACCGTTTATTCGCATTTCTTATTTTGAAGCCATGAAGTACTTGAATAAAGAAATGGATACAGTTGATCTTACTACTTCAAGACCTCGGGATCTGAACAAAAAAGAGGAGCACAGAATCCTAGATTGGG TTGGAGGGAATCGTCCTGTCTTTATTACTCATT TT CCCATGGAACTTAAACCATTTTACT GTCAGTCAGTTGACGGTATTAAAGCTGAGTGTGCTGA ]
[-] EMBL CD190086 [ TGTTTTGGAAACAATGCTGAAACAACCGTTTATTCGCATTTCTTATTTTGAAGCCATGAAGTACTTGAATAAAGAAATGGATACAGTTGATCTTACTACTTCAAGACCTCGGGATCTGAACAAAAAAGAGGAGCACAGAATCCTAGATTGGG TTGGAGGGAATCGTCCTGTCTTTATTACTCATT TT CCCATGGAACTTAAACCATTTTACT GTCAGTCAGTTGACGGTATTAAAGCTGAGTGTGCTGAT ]
[-] EMBL AI395409 [ GATTGGGTTTGGAGGAAATCGCCCTGTCAGTATTACGTATTGTTCCCCATGAAACTTAAACCAGTTGACTGGCCAGTCAGTTGACGGTATTAAAGCTGAGTGTGCTGATTTGTTATTTCCAGGGATCGGTGAACGAGTTGGGGCCAGCGTCCGTGAGAATGTTGCTTCTCGTTGACAAACACGCATGAAGTCCAATCGTTCGACAAATCAGTCGGATTGGTACATTAATTTACGTGGTACTGGTAGTGTTCCTCAT GGTGGTTTTGGTCTTGGCTTTGAGCGCCTTATGCAGTTTGTTTTGGGGATAGCTAACATTCGAGATACAATAGCATTCCCAAGAAATACGAATAAAATTATTGTCTAAAAAAAAAAAAAAAA]
consensusID : consensus_9288#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 180 fasta sequence
[CAGCGTNCGTGAGAATGTTGCTTTTCGGTTACAAACACGCATGAGTCCAATCGTTCGACATGGCAGTCGGATTGGGACATGATTTACGTGTAACTGGTNNGTGTTCCTCATGGTGGTTTTGGTCTTGGCTTTGAGCGCCTTATGCAGTTTGTTTTGGGGATAGCTAACATTCGAGATACA]
[-] EMBL AI026213 [CAGCGTNCGTGAGAATGTTGCTTTTCGGTTACAAACACGCATGAGTCCAATCGTTCGACATGGCAGTCGGATTGGGACATGATTTACGTGTAACTGGTNNGTGTTCCTCATGGTGGTTTTGGTCTTGGCTTTGAGCGCCTTATGCAGTTTGTTTTGGGGATAGCTAACATTCGAGATACA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9288#0 CGAGGACCACCTGAGTTTGGCGCAATGCTTAGAATGCGTGCCCATATTAAGCGAATCGTT 60
consensus_9288#1 ------------------------------------------------------------
consensus_9288#0 AGAAAAGTGATGAGTTCATGTGACTATTTAGAGGTTGATACTCCAATCCTCACTTCAACA 120
consensus_9288#1 ------------------------------------------------------------
consensus_9288#0 GATTGTGAAGGTACTGGTCAGATGTTCGAAGTTCAAGCACCTGCACTTAATGAGACTAGG 180
consensus_9288#1 ------------------------------------------------------------
consensus_9288#0 GAATCTGATAGTTCAAGTGTATATTTAACCGGTAGTGCTCAAATGCATTTGGAATCTCTT 240
consensus_9288#1 ------------------------------------------------------------
consensus_9288#0 GCTTTGGGTTTAAGTAAGGTTTATACATTGAATCCAACATTTCGAGCTGAGAATTCAAAT 300
consensus_9288#1 ------------------------------------------------------------
consensus_9288#0 ACAAGATATCATCTTGCAGAATTTTATATGCTTGAAGCAGAGTCGATTTACTTAGATAAT 360
consensus_9288#1 ------------------------------------------------------------
consensus_9288#0 ATTGATTCATTATGTATAGAAATTGAAATGCTTATTAAAAAGATATTAAATGAATGTTTA 420
consensus_9288#1 ------------------------------------------------------------
consensus_9288#0 GAAGTTTATCCTATCTCAGAATGTAATGAACTCAATGCTTTACAAAATGATTTACTGTTG 480
consensus_9288#1 ------------------------------------------------------------
consensus_9288#0 ATTCGAACATTCCTTGGTAGTCAATCTGAATCTGATAGTCATTGCAAACGTTTGCTAATT 540
consensus_9288#1 ------------------------------------------------------------
consensus_9288#0 GATTCTGCTCTGGAGCTAAGAGATGTTTTGGAAACAATGCTGAAACAACCGTTTATTCGC 600
consensus_9288#1 ------------------------------------------------------------
consensus_9288#0 ATTTCTTATTTTGAAGCCATGAAGTACTTGAATAAAGAAATGGATACAGTTGATCTTACT 660
consensus_9288#1 ------------------------------------------------------------
consensus_9288#0 ACTTCAAGACCTCGGGATCTGAACAAAAAAGAGGAGCACAGAATCCTAGATTGGGTTGGA 720
consensus_9288#1 ------------------------------------------------------------
consensus_9288#0 GGGAATCGTCCTGTCTTTATTACTCATTTTCCCATGGAACTTAAACCATTTTACTGTCAG 780
consensus_9288#1 ------------------------------------------------------------
consensus_9288#0 TCAGTTGACGGTATTAAAGCTGAGTGTGCTGATTTGTTATTTCCAGGGATCGGTGAACTA 840
consensus_9288#1 ------------------------------------------------------------
consensus_9288#0 GTTGGGGCCAGCGTCCGTGAGAATGTTGCTTCTCGTTTACAAACACGCATGAAGTCCAAT 900
consensus_9288#1 --------CAGCGTNCGTGAGAATGTTGCTTTTCGGTTACAAACACGCATGA-GTCCAAT 51
****** **************** *** **************** *******
consensus_9288#0 CGTTCGACAAATCAGTCGGATTGGTACATTAATTTACGTGGTACTGGTAG-TGTTCCTCA 959
consensus_9288#1 CGTTCGACATGGCAGTCGGATTGGGACAT-GATTTACGTGTAACTGGTNNGTGTTCCTCA 110
********* ************ **** ********* ****** *********
consensus_9288#0 TGGTGGTTTTGGTCTTGGCTTTGAGCGCCT-ATGCAGTTTGTTT-GGGGATAGCTA-CAT 1016
consensus_9288#1 TGGTGGTTTTGGTCTTGGCTTTGAGCGCCTTATGCAGTTTGTTTTGGGGATAGCTAACAT 170
****************************** ************* *********** ***
consensus_9288#0 TCGAGATCATAGCATCCCAAGAATACGAATAAAATTATTGTCTAAAAAAAAAAAAAAAA 1075
consensus_9288#1 TCGAGAT-ACA------------------------------------------------ 180
******* * *
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||