Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 9290 cluster # 9290       Sequences # 9       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9290#0 length = 918 sequences # 9  

consensusID : consensus_9290#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 918
fasta sequence
                              [CCTCCGAGCCAANAATTCGGCACGAGGAGAGTCCATTAATGGTATTGAAATGACTGTGACATATCCTGCAGAATCACATCACTTTACTAGATATGCCAACTCCTCTCGTCATATTATTCAGGAGACTCCTGCATTGTATAAGGATGTCATTCTCCCTTTTTTGTCCCAGAAACCCAAGGATCTTACTTGGATTGATAATGTAGTAGCAGGAATCGCTGAACAAGATCGTACTCTTCACAATGATGCTGATGAAATGTTTGGTTTTACATTAGTATTAGATTACCGATGGGATGGGTTACGCATTCAAGAACTTCATTGTTTGGGTATTGCTCATGACCAAAAGCTAACTTGTCTACGGGATCTCCGTAGCTGCCATGTTCCAATGCTAAAAAGAATTTTACAGCTAGGTCGTGATACACTCTTTCGCAAATATTCGAAGTCAGAAACATCCGACAATCAAATGTCTGGTGATAATTCGAAAATTATTTTATCAAAAGACCAAATTCTTGCATATATACATTATCCACCGACCTTCTACAGATTTCATGTTCACTTTGTGCACATCGATTCTGGAGACAACTATGGCACTAATGCATGTAGAGCACATATACTCGAAGAAGTTATTCGAAATCTCGAACAAGATGATTTATACTAT-GCAAATCGTACAATCACTATGTTTTTGCAT-GCTAATAAT-CCCATGTTTACAGCTATTTGTCA-GAACAGTTCCCACATATCCATTGT-CGATTCAGCTCCTGAATAAATTCCATATGTAGTGTCGTATTTTAG-AAGCAATGTAAGATTCCGCACTATTCAAACTTTGTAATAAAATCGTCTTAGTAAATAAAAATAAACTTATCCGAAAAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCAGCTGCATTACCGTACTGCGTA]

[+] EMBL CD080517             [CCTCCGAGCCAANAATTCGGCACGAGGAGAGTCCATTAATGGTATTGAAATGACTGTGACATATCCTGCAGAATCACATCACTTTACTAGATATGCCAACTCCTCTCGTCATATTATTCAGGAGACTCCTGCATTGTATAAGGATGTCATTCTCCCTTTTTTGTCCCAGAAACCCAAGGATCTTACTTGGATTGATAATGTAGTAGCAGGAATCGCTGAACAAGATCGTACTCTTCACAATGATGCTGATGAAATGTTTGGTTTTACATTAGTATTAGATTACCGATGGGATGGGTTACGCATTCAAGAACTTCATTGTTTGGGTATTGCTCATGACCAAAAGCTAACTTGTCTACGGGATCTCCGTAGCTGCCATGTTCCAATGCTAAAAAGAATTTTACAGCTAGGTCGTGATACACTCTTTCGCAAATATTCGAAGTCAGAAACATCCGACAATCAAATGTCTGGTGATAATTCGAAAATTATTTTATCAAAAGACCAAATTCTTGCATATATACATTATCCACCGACCTTCTACAGATTTCATGTTCACTTTGTGCACATCGATTCTGGAGACAACTATGGCACTAATGCATGTAGAGCACATATACTCGAAGAAGTTATTCGAAATCTCGAACAAGATGATTTATACTATNGC AATCGTACAATCACTATGTTTTTGCAT GCTAATAATCCCCATG TTACAGCTATTTGTCA GAACAG TCCCACATATNCATTGT CGATTCAGCTCCTGAATAAA TCCATATGTAGTGTCGTA TTTAGAAAGC ATGT AGATTCCCGACTA TCAAACTTNGT ATANAATCG                                                                                       ]
[-] EMBL CD156092             [                                                                                    TACTAGATATGCCAACTCCTCTCGTCATATTATTCAGGAGACTCCTGCATTGTATAAGGATGTCATTCTCCCTTTTTTGTCCCAGAAACCCAAGGATCTTACTTGGATTGATAATGTAGTAGCAGGAATCGCTGAACAAGATCGTACTCTTCACAATGATGCTGATGAAATGTTTGGTTTTACATTAGTATTAGATTACCGATGGGATGGGTTACGCATTCAAGAACTTCATTGTTTGGGTATTGCTCATGACCAAAAGCTAACTTGTCTACGGGATCTCCGTAGCTGCCATGTTCCAATGCTAAAAAGAATTTTACAGCTAGGTCGTGATACACTCTTTCGCAAATATTCGAAGTCAGAAACATCCGACAATCAAATGTCTGGTGATAATTCGAAAATTATTTTATCAAAAGACCAAATTCTTGCATATATACATTATCCACCGACCTTCTACAGATTTCATGTTCACTTTGTGCACATCGATTCTGGAGACAACTATGGCA                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CD155964             [                                                                                    TACTAGATATGCCAACTCCTCTCGTCATATTATTCAGGAGACTCCTGCATTGTATAAGGATGTCATTCTCCCTTTTTTGTCCCAGAAACCCAAGGATCTTACTTGGATTGATAATGTAGTAGCAGGAATCGCTGAACAAGATCGTACTCTTCACAATGATGCTGATGAAATGTTTGGTTTTACATTAGTATTAGATTACCGATGGGATGGGTTACGCACTCAAGAACTTCATTGTTTGGGTATTGCTCATGACCAAAAGCTAACTTGTCTACGGGATCTCCGTAGCTGCCATGTTCCAATGCTAAAAAGAATTTTACAGCTAGGTCGTGATACACTCTTTCGCAAATATTCGGAGTCAGAAACATCCGACAATCAAATGTCTGGTGATAATTCGAAAATTATTTTATCAAAAGACCAAATTCTTGCATATATACATTATCCACCGACCTTCTACAGATTTCATGTTCACTTTGTGCACATCGATTCTGGAGACAACTATGGCA                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CD060617             [                                                                                                                                                                                                     ATGTAGTAGCAGGAATCGCTGAACAAGATCGTACTCTTCACAATGATGCTGATGAAATGTTTGGTTTTACATTAGTATTAGATTACCGATGGGATGGGTTACGCATTCAAGAACTTCATTGTTTGGGTATTGCTCATGACCAAAAGCTAACTTGTCTACGGGATCTCCGTAGCTGCCATGTTCCAATGCTAAAAAGAATTTTACAGCTAGGTCGTGATACACTCTTTCGCAAATATTCGAAGTCAGAAACATCCGACAATCAAATGTCTGGTGATAATTCGAAAATTATTTTATCAAAAGACCAAATTCTTGCATATATACATTATCCACCGACCTACTACAGATTTCATGTTCACTTTGTGCACATCGATTCTGGAGACAACTATGGCACTAATGCATGTAGAGCACATATACTCGAAGAAGTTATTCGAAATCTCGAACAAGATGATTTATACTAT GCAAtcacc                                                                                                                                                                                                                                                                   ]
[+] EMBL CD178774             [                                                                                                                                                                                                                                  CGTACTCTTCACAATGATGCTGATGAAATGTTTGGTTTTACATTAGTATTAGATTACCGATGGGATGGGTTACGCATTCAAGAACTTCATTGTTTGGGTATTGCTCATGACCAAAAGCTAACTTGTCTACGGGATCTCCGTAGCTGCCATGTTCCAATGCTAAAAAGAATTCTACAGCTAGGTCGTGATACACTCTTTCGCAAATATTCGAAGTCAGAAACATCCGACAATCAAATGTCTGGTGATAATTCGAAAATTATTTTATCAAAAGACCAAATTCTTGCATATATACAT                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[-] EMBL CD074429             [                                                                                                                                                                                                                                                                                                        TACGCATTCAAGAACTTCATTGTTTGGGTATTGCTCATGACCAAAAGCTAACTTGTCTACGGGATCTCCGTAGCTGCCATGTTCCAATGCTAAAAAGAATTTTACAGCTAGGTCGTGATACACTCTTTCGCAAATATTCGAAGTCAGAAACATCCGACAATCAAATGTCTGGTGATAATTCGAAAATTATTTTATCAAAAGACCAAATTCTTGCATATATACATTATCCACCGACCTTCTACAGATTTCATGTTCACTTTGTGCACATCGATTCTGGAGACAACTATGGCACTAATGCATGTAGAGCACATATACTCGAAGAAGTTATTCGAAATCTCGAACAAGATGATTTATACTAT GCAAATCGTACAATCACTATGTTTTTGCAT GCTAATAAT CCCATGTTTACAGCTATTTGTCA GAACAGTTCCCACATATCCATTGT CGATTCAGCTCCTGAATAAATTCCATATGTAGTGTCGTATTTTAG AAGCAATGTAAGATTCCGCACTATTCAAACTTTGTAATAAAAT                                                                                         ]
[-] EMBL AI977529             [                                                                                                                                                                                                                                                                                                                                                                                                                                                              CATCCGGCAATCAAATGTCTGGTGATAATTCGAAAATTATTTTATCAAAAGACCAAATTCTTGCATATATACATTATCCACCGACCTTCTACAAATTTCATGTTCACTTTGTGCACATCGATTCTGGAGACAACTATGGCACTAATGCATGTAGAGCACATATACTCGAAGAAGTTATTCGAAATCTCGAACAAGATGATTTATACTAT GCAAATCGTACAATCACTATGTTTTTGCAT GCTAATAAT CCCATGTTTACAGCTATTTGTCA GAACAGTTCCCACATATCCATTGT CTATTCAGCTCCTGAATAAATTCCATATGTAGGGTCGTATTTTAG AAACAATGTAAGATTCCGCACTATTCAAACTTTGTAATAAAATGGTCTTAGTAAATAAAAATAAACTTATCCGAAAAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCAGCTGCATTACCGTACTGCGTA]
[-] EMBL CD169495             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ACTAT GCAAATCGTGCAATCACTATGTTTTTGCAT GCTAATAAT CCCATGTTTACAGCTATTTGTCA GAACAGTTCCCACATATCCATTGT CGATTCAGCTCCTGAATAAATTCCATATGTAGTGTCGTATTTTAG AAGCAATGTAAGATTCCGCACTATTCAAACTTTGTAATAAAATCGTCTTAGTAAATAAAAATAAA                                                                   ]
[+] EMBL AW587557             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ACAATCACTATGTTTTCGCATGGCTAATAAT CCCATGTTTACAGCTATTTGTCAGGACCAGTTCCCACATATCCATTGTCCGATTCAGCTCCTGAATAAATTCCATATGTAGTGTCGTATTTTAG AAGCAATGTAAGATTCCGCACTATTCAAACTTTGTAATAAAATCGTCTTAGTAAATAAAAATA                                                                     ]


>consensus_9290#0 CCTCCGAGCCAANAATTCGGCACGAGGAGAGTCCATTAATGGTATTGAAATGACTGTGAC ATATCCTGCAGAATCACATCACTTTACTAGATATGCCAACTCCTCTCGTCATATTATTCA GGAGACTCCTGCATTGTATAAGGATGTCATTCTCCCTTTTTTGTCCCAGAAACCCAAGGA TCTTACTTGGATTGATAATGTAGTAGCAGGAATCGCTGAACAAGATCGTACTCTTCACAA TGATGCTGATGAAATGTTTGGTTTTACATTAGTATTAGATTACCGATGGGATGGGTTACG CATTCAAGAACTTCATTGTTTGGGTATTGCTCATGACCAAAAGCTAACTTGTCTACGGGA TCTCCGTAGCTGCCATGTTCCAATGCTAAAAAGAATTTTACAGCTAGGTCGTGATACACT CTTTCGCAAATATTCGAAGTCAGAAACATCCGACAATCAAATGTCTGGTGATAATTCGAA AATTATTTTATCAAAAGACCAAATTCTTGCATATATACATTATCCACCGACCTTCTACAG ATTTCATGTTCACTTTGTGCACATCGATTCTGGAGACAACTATGGCACTAATGCATGTAG AGCACATATACTCGAAGAAGTTATTCGAAATCTCGAACAAGATGATTTATACTATGCAAA TCGTACAATCACTATGTTTTTGCATGCTAATAATCCCATGTTTACAGCTATTTGTCAGAA CAGTTCCCACATATCCATTGTCGATTCAGCTCCTGAATAAATTCCATATGTAGTGTCGTA TTTTAGAAGCAATGTAAGATTCCGCACTATTCAAACTTTGTAATAAAATCGTCTTAGTAA ATAAAAATAAACTTATCCGAAAAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCAGCT GCATTACCGTACTGCGTA



clustalw multiple alignements is not computed in this case


Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)