These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9296#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1064 fasta sequence [AGGACCAGACGGAAATCCAGGAATTCAGGGCCCACCCGGAGCTTCGGGTGTTAAGGGTCCTCCAGGGAGTAGAGGACCAGTTGGTCCAACTGGGATGAGAGGACCGCCTGGATTAATTGGACAGCCCGGGCCACCAGGTAAACAAGGAAGTCAAGGAAGACCTGGAAAACCAGGGCCAGATGGATTTGAAGGGAAACGAGGTCCTCCAGGGGAAATAGGAGCACCTGGAGTTCCTGGAAATAAAGGACCAGTGGGAGACGAAGGAGAACCTGGCTCAAGAGGTGCATCCGGAAATATGGGTCTTACCGGGCCACCTGGTGATGGTGGGCCTCCTGGATTGCCAGGAATTCCAGGTTCACGAGGAACACAAGGACCACCGGGTGAAGTTGGCCTTAAAGGTGAAGCGGGTCTTCCAGGCGTTCCAGGACCAATTGGGCAACCAGGACCAATGGGACCACCAGGTATTCAAGGTCCACTGGGTGAACCAGGACCGCCAGGAAATGATGGTCCTCCGGGAGCCATTGGTTTGCCTGGACCACCGGGAGAGTTTAAAACTGACTATACATCATTGTTTAGTCGTAGAAGAGACACAGATGTTGGAATGATGCAAGCTGATGAACCCCGTAATAGAGGAAGGAGAATACGCCGTTCATATGAATGGAGTGATGAAGATTATGATCCAAGCAAAGAAACTGATCCTAATGATGTTGATGATGAAAGCGACGATGAAAGTGCAGATTTTGACCCATCAATTGAATTCGAAGATACCGATGAGAATGATGATGATGAAGAGGAAGGAGATGAAGAGGATGATGATGACGACGACGACGATGATGATGAAGACGAAGAGGATGACGACGATGACGATGAACTGACTGGTTTTTCCATACCACGTTCTATAGCAGACACTGAAGAATCAGAACCTGGAATAGATAGTGGGACAACTGCATGCGTTGCTGTTCTTGTACCAGTCAATGGTGTTGTACGCTTGTATGTTGCTAATGCTGGCGATTCACGAGCTGTACTCTGTCGTGGTGGTGCTGCAGTCGATTTATCAGTTGATC] [+] EMBL CD068918 [AGGACCAGACGGAAATCCAGGAATTCAGGGCCCACCCGGAGCTTCGGGTGTTAAGGGTCCTCCAGGGAGTAGAGGACCAGTTGGTCCAACTGGGATGAGAGGACCGCCTGGATTAATTGGACAGCCCGGGCCACCAGGTAAACAAGGAAGTCAAGGAAGACCTGGAAAACCAGGGCCAGATGGATTTGAAGGGAAACGAGGTCCTCCAGGGGAAATAGGAGCACCTGGAGTTCCTGGAAATAAAGGACCAGTGGGAGACGAAGGAGAACCTGGCTCAAGAGGTGCATCCGGAAATATGGGTCTTACCGGGCCACCTGATGATGGTGGGCCTCCTGGATTGCCAGGAATTCCAGGTTCACGAGGAACACAAGGACCACCGGGTGAAGTTGGCCTTAAAGGTGAAGCGGGTCTTCCAGGCGTTCCAGGACCAATTGGGCAACCAGGACC ] [-] EMBL BG931404 [ CCGTAGCTTCGGGTGTTAAGGGTCTTCCAGGTAGTAGAGGACCAGTTGGTCCAAATGGGATGAGAGGACCGCTTGGATTAATTGGACAGCCCGGGCCACCAGGTAAACAAGGAAGTCAAGCAAGACCTGGAAAACCAGGGCCAGATGGATTTGAAGGGAAACAAGGTCCTCCAGGGCAAATAGGAGCACTTGGAGTTCCTGGAAATAAAGGACCAGTGGGAGACGAAGGAGAACCTGGCTCAAGAGGTGCATCCGGAAATATGGGTCTGACCGGGCCACCTGGTGATGGTGGGCTTCTTG ] [+] EMBL AI975010 [ TGGACAGCCCGGGCCACCAGGTAAACAAGGAAGTCAAGGAAGACCTGGAAAACCAGGGCCAGATGGATTTGAAGGGAAACGAGGTCCTCCAGGGGAAATAGGAGCACCTGGAGTTCCTGGAAATAAAGGACCAGTGGGAGACGAAGGACAACCTGGCTTAAGAGGTGCATCCGGAAATATGGGTCTTACCGGGCCACCTGG ] [+] EMBL CD134782 [ GGGCCACCAGGTAAACAAGGAAGTCAAGGAAGACCTGGAAAACCAGGGCCAGATGGATTTGAAGGGAAACGAGGTCCTCCAGGGGAAATAGGAGCACCTGGAGTTCCTGGAAATAAAGGACCAGTGGGAGACGAAGGAGAACCTGGCTCAAGAGGTGCATCCGGAAATATGGGTCTTACCGGGCCACCTGGTGATGGTGGGCCTCCTGGATTGCCAGGAATTCCAGGTTCACGAGGAACACAAGGACCACCGGGTGAAGTTGGCCTTAAAGGTGAAGCGGGTCTTCCAGGCGTTCCAGGACCAATTGGGCAACCAGGACCAATGGGACCACCAGGTATTCAAGGTCCACTGGGTGAACCAGGACCGCCAGGAAATGATGGTCCTCCGGGAGCCATTGGTTTGCCTGGACCACCGGGAGAGTTTAAAACTGACTATACATCATTGTTTAGTCGTAGAAGAGACACAGATGTTGGAATGATGCAAGCTGATGAACCCCGTAATA ] [+] EMBL CD190835 [ GGGAAACGAGGTCCTCCAGGGGAAATAGGAGCACCTGGAGTTCCTGGAAATAAAGGACCAGTGGGAGACGAAGGAGAACCTGGCTCAAGAGGTGCATCCGGAAATATGGGGCTGACCGGGCCACCTGGTGTTGGTGGGCCTCCTGGATTGCCAGGAATTCCAGGTTCACGAGGAACACAAGGACCACCGGGTGAAGTTGGCCTTAAAGGTGAAGCGGGTCTTCCAGGCGTTCCAGGACCAATTGGGCAACCAGGACCAATGGGACCACCAGGTATTCAAGGTCCACTGGGTGAACCAGGACCGCCAGGAAATGATGGTCCTCCGGGAGCCATTGGTTTGCCTGGACCACCGGGAGAGTTTAAAACTGACTATACA ] [-] EMBL BG930909 [ GGAACACAAGGACCACCGGGTGAAGTTGGCCTTAAAGGTGAAGCGGGTCTTCCAGGCGTTCCAGGACCTATTGGGCAACCAGGACCAATGGGACCACCAGGTATTCAAGCTCCACTGGGTGAACCAGGACCGCCAGGAAATGATGGTCCTCCGGGAGCCATTGGTTTGCCTGGACCACCGGGAGAGTTTAAAACTGACTATACATCATTGTTTAGTCGTAGAAGAGACACAGATGTTGGAATGATGCAAGCTGATGAA ] [-] EMBL CD093363 [ GTGAACCAGGACCGCCAGGAAATGATGGTCCTCCGGGAGCCATTGGTTTGCCTGGACCACCGGGAGAGTTTAAAACTGACTATACATCATTGTTTAGTCGTAGAAGAGACACAGATGTTGGAATGATGCAAGCTGATGTACCCCGTAATAGAGGAAGGAGAATACGCCGTTCATATGAATGGAGTGATG ] [+] EMBL CD060704 [ cgcaggGGGAGCCATTGGTTTGCCTGGACCACCGGGAGAGTTTAAAACTGACTATACATCATTGTTTAGTCGTAGAAGAGACACAGATGTTGGAATGATGCAAGCTGATGAACCCCGTAATAGAGGAAGGAGAATACGCCGTTCATATGAATGGAGTGATGAAGATTATGATCCAAGCAAAGAAACTGATCCTAATGATGTTGATGATGAAAGCGACGATGAAAGTGCAGATTTTGACCCATCAATTGAATTCGAAGATACCGATGAGAATGATGATGATGAAGAGGAAGGAGATGAAGAGGATGATGATGACGACGACGACGATGATGATGAAGACGAAGAGGATGACGACGATGACGATGAACTGACTGGTTTTTCCATACCACGTTCTATAGCAGACACTGAAGAATCAGAACCTGGAATAGATAGTGGGACAACTGCATGCGTTGCTGTTCTTGTACCAGTCAATGGTGTTGTACGCTTGTATGTTGCTAATGCTGGCGATTCACGAGCTGTACTCTGTCGTGGTGGTGCTGCAGTCGATTTATCAGTTGATC] consensusID : consensus_9296#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 466 fasta sequence [GTGATGGTGGGCCTCCTGGATTGCCAGGAATTCGCAGGTTCACGAGGAACACAAGGACCACCGGGTGAAGTTGGCCTTAAAGGTGAAGCGGGTCTTCCAGGCGTTCCAGGACCAATTGGGCAACCAGGACCAATGGGACCACCAGGTATTCAAGGTCCACTGGGTGAACCAGGACCGCCAGGAAATGATGGTCCTCCGGGAGCCATTGGTTTGCCTGGACCACCGGGAGAGTATAAAACTGACTATACATCATTGTTTAGTCGTAGAAGAGACACAGATGTTGGAATGATGCAAGCTGATGAACCCCGTAATAGAGGAAGGAGAATACGCCGTTCATATGAATGGAGTGATGAAGATTATGATCCAAGCAAAGAAACTGATCCTAATGATGAGGAGGAAGATATTTTTGAAGCATTGCGTCAAGTTGGAAGACTTGTGAATAGTTGGAATAGTGGGAGTGGAACTC] [+] EMBL CD061369 [GTGATGGTGGGCCTCCTGGATTGCCAGGAATTCGCAGGTTCACGAGGAACACAAGGACCACCGGGTGAAGTTGGCCTTAAAGGTGAAGCGGGTCTTCCAGGCGTTCCAGGACCAATTGGGCAACCAGGACCAATGGGACCACCAGGTATTCAAGGTCCACTGGGTGAACCAGGACCGCCAGGAAATGATGGTCCTCCGGGAGCCATTGGTTTGCCTGGACCACCGGGAGAGTATAAAACTGACTATACATCATTGTTTAGTCGTAGAAGAGACACAGATGTTGGAATGATGCAAGCTGATGAACCCCGTAATAGAGGAAGGAGAATACGCCGTTCATATGAATGGAGTGATGAAGATTATGATCCAAGCAAAGAAACTGATCCTAATGATGAGGAGGAAGATATTTTTGAAGCATTGCGTCAAGTTGGAAGACTTGTGAATAGTTGGAATAGTGGGAGTGGAACTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9296#0 AGGACCAGACGGAAATCCAGGAATTCAGGGCCCACCCGGAGCTTCGGGTGTTAAGGGTCC 60 consensus_9296#1 ------------------------------------------------------------ consensus_9296#0 TCCAGGGAGTAGAGGACCAGTTGGTCCAACTGGGATGAGAGGACCGCCTGGATTAATTGG 120 consensus_9296#1 ------------------------------------------------------------ consensus_9296#0 ACAGCCCGGGCCACCAGGTAAACAAGGAAGTCAAGGAAGACCTGGAAAACCAGGGCCAGA 180 consensus_9296#1 ------------------------------------------------------------ consensus_9296#0 TGGATTTGAAGGGAAACGAGGTCCTCCAGGGGAAATAGGAGCACCTGGAGTTCCTGGAAA 240 consensus_9296#1 ------------------------------------------------------------ consensus_9296#0 TAAAGGACCAGTGGGAGACGAAGGAGAACCTGGCTCAAGAGGTGCATCCGGAAATATGGG 300 consensus_9296#1 ------------------------------------------------------------ consensus_9296#0 TCTTACCGGGCCACCTGGTGATGGTGGGCCTCCTGGATTGCCAGGAATTC-CAGGTTCAC 359 consensus_9296#1 -----------------GTGATGGTGGGCCTCCTGGATTGCCAGGAATTCGCAGGTTCAC 43 ********************************* ********* consensus_9296#0 GAGGAACACAAGGACCACCGGGTGAAGTTGGCCTTAAAGGTGAAGCGGGTCTTCCAGGCG 419 consensus_9296#1 GAGGAACACAAGGACCACCGGGTGAAGTTGGCCTTAAAGGTGAAGCGGGTCTTCCAGGCG 103 ************************************************************ consensus_9296#0 TTCCAGGACCAATTGGGCAACCAGGACCAATGGGACCACCAGGTATTCAAGGTCCACTGG 479 consensus_9296#1 TTCCAGGACCAATTGGGCAACCAGGACCAATGGGACCACCAGGTATTCAAGGTCCACTGG 163 ************************************************************ consensus_9296#0 GTGAACCAGGACCGCCAGGAAATGATGGTCCTCCGGGAGCCATTGGTTTGCCTGGACCAC 539 consensus_9296#1 GTGAACCAGGACCGCCAGGAAATGATGGTCCTCCGGGAGCCATTGGTTTGCCTGGACCAC 223 ************************************************************ consensus_9296#0 CGGGAGAGTTTAAAACTGACTATACATCATTGTTTAGTCGTAGAAGAGACACAGATGTTG 599 consensus_9296#1 CGGGAGAGTATAAAACTGACTATACATCATTGTTTAGTCGTAGAAGAGACACAGATGTTG 283 ********* ************************************************** consensus_9296#0 GAATGATGCAAGCTGATGAACCCCGTAATAGAGGAAGGAGAATACGCCGTTCATATGAAT 659 consensus_9296#1 GAATGATGCAAGCTGATGAACCCCGTAATAGAGGAAGGAGAATACGCCGTTCATATGAAT 343 ************************************************************ consensus_9296#0 GGAGTGATGAAGATTATGATCCAAGCAAAGAAACTGATCCTAATGATGTTGATGATGAAA 719 consensus_9296#1 GGAGTGATGAAGATTATGATCCAAGCAAAGAAACTGATCCTAATGATG------------ 391 ************************************************ consensus_9296#0 GCGACGATGAAAGTGCAGATTTTGACCCATCA-ATTGAATTCGAAGATACCGATGAGAAT 778 consensus_9296#1 ---AGGAGGAAGATAT---TTTTGAAGCATTGCGTCAAGTTGGAAGACT----TGTGAAT 441 * ** *** * ****** *** * * ** ***** ** **** consensus_9296#0 GATGATGATGAAGAGGAAGGAGATGAAGAGGATGATGATGACGACGACGACGATGATGAT 838 consensus_9296#1 AGTTGGAATAGTGGGAGTGGAACTC----------------------------------- 466 * ** * * *** * consensus_9296#0 GAAGACGAAGAGGATGACGACGATGACGATGAACTGACTGGTTTTTCCATACCACGTTCT 898 consensus_9296#1 ------------------------------------------------------------ consensus_9296#0 ATAGCAGACACTGAAGAATCAGAACCTGGAATAGATAGTGGGACAACTGCATGCGTTGCT 958 consensus_9296#1 ------------------------------------------------------------ consensus_9296#0 GTTCTTGTACCAGTCAATGGTGTTGTACGCTTGTATGTTGCTAATGCTGGCGATTCACGA 1018 consensus_9296#1 ------------------------------------------------------------ consensus_9296#0 GCTGTACTCTGTCGTGGTGGTGCTGCAGTCGATTTATCAGTTGATC 1064 consensus_9296#1 ---------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||