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Schistosoma mansoni
cluster # 9296 cluster # 9296       Sequences # 9       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9296#0 length = 1064 sequences # 8  
consensus_9296#1 length = 466 sequences # 1  

consensusID : consensus_9296#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 1064
fasta sequence
                              [AGGACCAGACGGAAATCCAGGAATTCAGGGCCCACCCGGAGCTTCGGGTGTTAAGGGTCCTCCAGGGAGTAGAGGACCAGTTGGTCCAACTGGGATGAGAGGACCGCCTGGATTAATTGGACAGCCCGGGCCACCAGGTAAACAAGGAAGTCAAGGAAGACCTGGAAAACCAGGGCCAGATGGATTTGAAGGGAAACGAGGTCCTCCAGGGGAAATAGGAGCACCTGGAGTTCCTGGAAATAAAGGACCAGTGGGAGACGAAGGAGAACCTGGCTCAAGAGGTGCATCCGGAAATATGGGTCTTACCGGGCCACCTGGTGATGGTGGGCCTCCTGGATTGCCAGGAATTCCAGGTTCACGAGGAACACAAGGACCACCGGGTGAAGTTGGCCTTAAAGGTGAAGCGGGTCTTCCAGGCGTTCCAGGACCAATTGGGCAACCAGGACCAATGGGACCACCAGGTATTCAAGGTCCACTGGGTGAACCAGGACCGCCAGGAAATGATGGTCCTCCGGGAGCCATTGGTTTGCCTGGACCACCGGGAGAGTTTAAAACTGACTATACATCATTGTTTAGTCGTAGAAGAGACACAGATGTTGGAATGATGCAAGCTGATGAACCCCGTAATAGAGGAAGGAGAATACGCCGTTCATATGAATGGAGTGATGAAGATTATGATCCAAGCAAAGAAACTGATCCTAATGATGTTGATGATGAAAGCGACGATGAAAGTGCAGATTTTGACCCATCAATTGAATTCGAAGATACCGATGAGAATGATGATGATGAAGAGGAAGGAGATGAAGAGGATGATGATGACGACGACGACGATGATGATGAAGACGAAGAGGATGACGACGATGACGATGAACTGACTGGTTTTTCCATACCACGTTCTATAGCAGACACTGAAGAATCAGAACCTGGAATAGATAGTGGGACAACTGCATGCGTTGCTGTTCTTGTACCAGTCAATGGTGTTGTACGCTTGTATGTTGCTAATGCTGGCGATTCACGAGCTGTACTCTGTCGTGGTGGTGCTGCAGTCGATTTATCAGTTGATC]

[+] EMBL CD068918             [AGGACCAGACGGAAATCCAGGAATTCAGGGCCCACCCGGAGCTTCGGGTGTTAAGGGTCCTCCAGGGAGTAGAGGACCAGTTGGTCCAACTGGGATGAGAGGACCGCCTGGATTAATTGGACAGCCCGGGCCACCAGGTAAACAAGGAAGTCAAGGAAGACCTGGAAAACCAGGGCCAGATGGATTTGAAGGGAAACGAGGTCCTCCAGGGGAAATAGGAGCACCTGGAGTTCCTGGAAATAAAGGACCAGTGGGAGACGAAGGAGAACCTGGCTCAAGAGGTGCATCCGGAAATATGGGTCTTACCGGGCCACCTGATGATGGTGGGCCTCCTGGATTGCCAGGAATTCCAGGTTCACGAGGAACACAAGGACCACCGGGTGAAGTTGGCCTTAAAGGTGAAGCGGGTCTTCCAGGCGTTCCAGGACCAATTGGGCAACCAGGACC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL BG931404             [                                   CCGTAGCTTCGGGTGTTAAGGGTCTTCCAGGTAGTAGAGGACCAGTTGGTCCAAATGGGATGAGAGGACCGCTTGGATTAATTGGACAGCCCGGGCCACCAGGTAAACAAGGAAGTCAAGCAAGACCTGGAAAACCAGGGCCAGATGGATTTGAAGGGAAACAAGGTCCTCCAGGGCAAATAGGAGCACTTGGAGTTCCTGGAAATAAAGGACCAGTGGGAGACGAAGGAGAACCTGGCTCAAGAGGTGCATCCGGAAATATGGGTCTGACCGGGCCACCTGGTGATGGTGGGCTTCTTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL AI975010             [                                                                                                                     TGGACAGCCCGGGCCACCAGGTAAACAAGGAAGTCAAGGAAGACCTGGAAAACCAGGGCCAGATGGATTTGAAGGGAAACGAGGTCCTCCAGGGGAAATAGGAGCACCTGGAGTTCCTGGAAATAAAGGACCAGTGGGAGACGAAGGACAACCTGGCTTAAGAGGTGCATCCGGAAATATGGGTCTTACCGGGCCACCTGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CD134782             [                                                                                                                               GGGCCACCAGGTAAACAAGGAAGTCAAGGAAGACCTGGAAAACCAGGGCCAGATGGATTTGAAGGGAAACGAGGTCCTCCAGGGGAAATAGGAGCACCTGGAGTTCCTGGAAATAAAGGACCAGTGGGAGACGAAGGAGAACCTGGCTCAAGAGGTGCATCCGGAAATATGGGTCTTACCGGGCCACCTGGTGATGGTGGGCCTCCTGGATTGCCAGGAATTCCAGGTTCACGAGGAACACAAGGACCACCGGGTGAAGTTGGCCTTAAAGGTGAAGCGGGTCTTCCAGGCGTTCCAGGACCAATTGGGCAACCAGGACCAATGGGACCACCAGGTATTCAAGGTCCACTGGGTGAACCAGGACCGCCAGGAAATGATGGTCCTCCGGGAGCCATTGGTTTGCCTGGACCACCGGGAGAGTTTAAAACTGACTATACATCATTGTTTAGTCGTAGAAGAGACACAGATGTTGGAATGATGCAAGCTGATGAACCCCGTAATA                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CD190835             [                                                                                                                                                                                              GGGAAACGAGGTCCTCCAGGGGAAATAGGAGCACCTGGAGTTCCTGGAAATAAAGGACCAGTGGGAGACGAAGGAGAACCTGGCTCAAGAGGTGCATCCGGAAATATGGGGCTGACCGGGCCACCTGGTGTTGGTGGGCCTCCTGGATTGCCAGGAATTCCAGGTTCACGAGGAACACAAGGACCACCGGGTGAAGTTGGCCTTAAAGGTGAAGCGGGTCTTCCAGGCGTTCCAGGACCAATTGGGCAACCAGGACCAATGGGACCACCAGGTATTCAAGGTCCACTGGGTGAACCAGGACCGCCAGGAAATGATGGTCCTCCGGGAGCCATTGGTTTGCCTGGACCACCGGGAGAGTTTAAAACTGACTATACA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL BG930909             [                                                                                                                                                                                                                                                                                                                                                                         GGAACACAAGGACCACCGGGTGAAGTTGGCCTTAAAGGTGAAGCGGGTCTTCCAGGCGTTCCAGGACCTATTGGGCAACCAGGACCAATGGGACCACCAGGTATTCAAGCTCCACTGGGTGAACCAGGACCGCCAGGAAATGATGGTCCTCCGGGAGCCATTGGTTTGCCTGGACCACCGGGAGAGTTTAAAACTGACTATACATCATTGTTTAGTCGTAGAAGAGACACAGATGTTGGAATGATGCAAGCTGATGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL CD093363             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GTGAACCAGGACCGCCAGGAAATGATGGTCCTCCGGGAGCCATTGGTTTGCCTGGACCACCGGGAGAGTTTAAAACTGACTATACATCATTGTTTAGTCGTAGAAGAGACACAGATGTTGGAATGATGCAAGCTGATGTACCCCGTAATAGAGGAAGGAGAATACGCCGTTCATATGAATGGAGTGATG                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CD060704             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           cgcaggGGGAGCCATTGGTTTGCCTGGACCACCGGGAGAGTTTAAAACTGACTATACATCATTGTTTAGTCGTAGAAGAGACACAGATGTTGGAATGATGCAAGCTGATGAACCCCGTAATAGAGGAAGGAGAATACGCCGTTCATATGAATGGAGTGATGAAGATTATGATCCAAGCAAAGAAACTGATCCTAATGATGTTGATGATGAAAGCGACGATGAAAGTGCAGATTTTGACCCATCAATTGAATTCGAAGATACCGATGAGAATGATGATGATGAAGAGGAAGGAGATGAAGAGGATGATGATGACGACGACGACGATGATGATGAAGACGAAGAGGATGACGACGATGACGATGAACTGACTGGTTTTTCCATACCACGTTCTATAGCAGACACTGAAGAATCAGAACCTGGAATAGATAGTGGGACAACTGCATGCGTTGCTGTTCTTGTACCAGTCAATGGTGTTGTACGCTTGTATGTTGCTAATGCTGGCGATTCACGAGCTGTACTCTGTCGTGGTGGTGCTGCAGTCGATTTATCAGTTGATC]


>consensus_9296#0 AGGACCAGACGGAAATCCAGGAATTCAGGGCCCACCCGGAGCTTCGGGTGTTAAGGGTCC TCCAGGGAGTAGAGGACCAGTTGGTCCAACTGGGATGAGAGGACCGCCTGGATTAATTGG ACAGCCCGGGCCACCAGGTAAACAAGGAAGTCAAGGAAGACCTGGAAAACCAGGGCCAGA TGGATTTGAAGGGAAACGAGGTCCTCCAGGGGAAATAGGAGCACCTGGAGTTCCTGGAAA TAAAGGACCAGTGGGAGACGAAGGAGAACCTGGCTCAAGAGGTGCATCCGGAAATATGGG TCTTACCGGGCCACCTGGTGATGGTGGGCCTCCTGGATTGCCAGGAATTCCAGGTTCACG AGGAACACAAGGACCACCGGGTGAAGTTGGCCTTAAAGGTGAAGCGGGTCTTCCAGGCGT TCCAGGACCAATTGGGCAACCAGGACCAATGGGACCACCAGGTATTCAAGGTCCACTGGG TGAACCAGGACCGCCAGGAAATGATGGTCCTCCGGGAGCCATTGGTTTGCCTGGACCACC GGGAGAGTTTAAAACTGACTATACATCATTGTTTAGTCGTAGAAGAGACACAGATGTTGG AATGATGCAAGCTGATGAACCCCGTAATAGAGGAAGGAGAATACGCCGTTCATATGAATG GAGTGATGAAGATTATGATCCAAGCAAAGAAACTGATCCTAATGATGTTGATGATGAAAG CGACGATGAAAGTGCAGATTTTGACCCATCAATTGAATTCGAAGATACCGATGAGAATGA TGATGATGAAGAGGAAGGAGATGAAGAGGATGATGATGACGACGACGACGATGATGATGA AGACGAAGAGGATGACGACGATGACGATGAACTGACTGGTTTTTCCATACCACGTTCTAT AGCAGACACTGAAGAATCAGAACCTGGAATAGATAGTGGGACAACTGCATGCGTTGCTGT TCTTGTACCAGTCAATGGTGTTGTACGCTTGTATGTTGCTAATGCTGGCGATTCACGAGC TGTACTCTGTCGTGGTGGTGCTGCAGTCGATTTATCAGTTGATC



consensusID : consensus_9296#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 466
fasta sequence
                              [GTGATGGTGGGCCTCCTGGATTGCCAGGAATTCGCAGGTTCACGAGGAACACAAGGACCACCGGGTGAAGTTGGCCTTAAAGGTGAAGCGGGTCTTCCAGGCGTTCCAGGACCAATTGGGCAACCAGGACCAATGGGACCACCAGGTATTCAAGGTCCACTGGGTGAACCAGGACCGCCAGGAAATGATGGTCCTCCGGGAGCCATTGGTTTGCCTGGACCACCGGGAGAGTATAAAACTGACTATACATCATTGTTTAGTCGTAGAAGAGACACAGATGTTGGAATGATGCAAGCTGATGAACCCCGTAATAGAGGAAGGAGAATACGCCGTTCATATGAATGGAGTGATGAAGATTATGATCCAAGCAAAGAAACTGATCCTAATGATGAGGAGGAAGATATTTTTGAAGCATTGCGTCAAGTTGGAAGACTTGTGAATAGTTGGAATAGTGGGAGTGGAACTC]

[+] EMBL CD061369             [GTGATGGTGGGCCTCCTGGATTGCCAGGAATTCGCAGGTTCACGAGGAACACAAGGACCACCGGGTGAAGTTGGCCTTAAAGGTGAAGCGGGTCTTCCAGGCGTTCCAGGACCAATTGGGCAACCAGGACCAATGGGACCACCAGGTATTCAAGGTCCACTGGGTGAACCAGGACCGCCAGGAAATGATGGTCCTCCGGGAGCCATTGGTTTGCCTGGACCACCGGGAGAGTATAAAACTGACTATACATCATTGTTTAGTCGTAGAAGAGACACAGATGTTGGAATGATGCAAGCTGATGAACCCCGTAATAGAGGAAGGAGAATACGCCGTTCATATGAATGGAGTGATGAAGATTATGATCCAAGCAAAGAAACTGATCCTAATGATGAGGAGGAAGATATTTTTGAAGCATTGCGTCAAGTTGGAAGACTTGTGAATAGTTGGAATAGTGGGAGTGGAACTC]


>consensus_9296#1 GTGATGGTGGGCCTCCTGGATTGCCAGGAATTCGCAGGTTCACGAGGAACACAAGGACCA CCGGGTGAAGTTGGCCTTAAAGGTGAAGCGGGTCTTCCAGGCGTTCCAGGACCAATTGGG CAACCAGGACCAATGGGACCACCAGGTATTCAAGGTCCACTGGGTGAACCAGGACCGCCA GGAAATGATGGTCCTCCGGGAGCCATTGGTTTGCCTGGACCACCGGGAGAGTATAAAACT GACTATACATCATTGTTTAGTCGTAGAAGAGACACAGATGTTGGAATGATGCAAGCTGAT GAACCCCGTAATAGAGGAAGGAGAATACGCCGTTCATATGAATGGAGTGATGAAGATTAT GATCCAAGCAAAGAAACTGATCCTAATGATGAGGAGGAAGATATTTTTGAAGCATTGCGT CAAGTTGGAAGACTTGTGAATAGTTGGAATAGTGGGAGTGGAACTC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9296#0      AGGACCAGACGGAAATCCAGGAATTCAGGGCCCACCCGGAGCTTCGGGTGTTAAGGGTCC 60
consensus_9296#1      ------------------------------------------------------------
                                                                                  

consensus_9296#0      TCCAGGGAGTAGAGGACCAGTTGGTCCAACTGGGATGAGAGGACCGCCTGGATTAATTGG 120
consensus_9296#1      ------------------------------------------------------------
                                                                                  

consensus_9296#0      ACAGCCCGGGCCACCAGGTAAACAAGGAAGTCAAGGAAGACCTGGAAAACCAGGGCCAGA 180
consensus_9296#1      ------------------------------------------------------------
                                                                                  

consensus_9296#0      TGGATTTGAAGGGAAACGAGGTCCTCCAGGGGAAATAGGAGCACCTGGAGTTCCTGGAAA 240
consensus_9296#1      ------------------------------------------------------------
                                                                                  

consensus_9296#0      TAAAGGACCAGTGGGAGACGAAGGAGAACCTGGCTCAAGAGGTGCATCCGGAAATATGGG 300
consensus_9296#1      ------------------------------------------------------------
                                                                                  

consensus_9296#0      TCTTACCGGGCCACCTGGTGATGGTGGGCCTCCTGGATTGCCAGGAATTC-CAGGTTCAC 359
consensus_9296#1      -----------------GTGATGGTGGGCCTCCTGGATTGCCAGGAATTCGCAGGTTCAC 43
                                       ********************************* *********

consensus_9296#0      GAGGAACACAAGGACCACCGGGTGAAGTTGGCCTTAAAGGTGAAGCGGGTCTTCCAGGCG 419
consensus_9296#1      GAGGAACACAAGGACCACCGGGTGAAGTTGGCCTTAAAGGTGAAGCGGGTCTTCCAGGCG 103
                      ************************************************************

consensus_9296#0      TTCCAGGACCAATTGGGCAACCAGGACCAATGGGACCACCAGGTATTCAAGGTCCACTGG 479
consensus_9296#1      TTCCAGGACCAATTGGGCAACCAGGACCAATGGGACCACCAGGTATTCAAGGTCCACTGG 163
                      ************************************************************

consensus_9296#0      GTGAACCAGGACCGCCAGGAAATGATGGTCCTCCGGGAGCCATTGGTTTGCCTGGACCAC 539
consensus_9296#1      GTGAACCAGGACCGCCAGGAAATGATGGTCCTCCGGGAGCCATTGGTTTGCCTGGACCAC 223
                      ************************************************************

consensus_9296#0      CGGGAGAGTTTAAAACTGACTATACATCATTGTTTAGTCGTAGAAGAGACACAGATGTTG 599
consensus_9296#1      CGGGAGAGTATAAAACTGACTATACATCATTGTTTAGTCGTAGAAGAGACACAGATGTTG 283
                      ********* **************************************************

consensus_9296#0      GAATGATGCAAGCTGATGAACCCCGTAATAGAGGAAGGAGAATACGCCGTTCATATGAAT 659
consensus_9296#1      GAATGATGCAAGCTGATGAACCCCGTAATAGAGGAAGGAGAATACGCCGTTCATATGAAT 343
                      ************************************************************

consensus_9296#0      GGAGTGATGAAGATTATGATCCAAGCAAAGAAACTGATCCTAATGATGTTGATGATGAAA 719
consensus_9296#1      GGAGTGATGAAGATTATGATCCAAGCAAAGAAACTGATCCTAATGATG------------ 391
                      ************************************************            

consensus_9296#0      GCGACGATGAAAGTGCAGATTTTGACCCATCA-ATTGAATTCGAAGATACCGATGAGAAT 778
consensus_9296#1      ---AGGAGGAAGATAT---TTTTGAAGCATTGCGTCAAGTTGGAAGACT----TGTGAAT 441
                         * ** ***  *     ******  ***    *  * ** *****      ** ****

consensus_9296#0      GATGATGATGAAGAGGAAGGAGATGAAGAGGATGATGATGACGACGACGACGATGATGAT 838
consensus_9296#1      AGTTGGAATAGTGGGAGTGGAACTC----------------------------------- 466
                        *    **   * *   ***  *                                    

consensus_9296#0      GAAGACGAAGAGGATGACGACGATGACGATGAACTGACTGGTTTTTCCATACCACGTTCT 898
consensus_9296#1      ------------------------------------------------------------
                                                                                  

consensus_9296#0      ATAGCAGACACTGAAGAATCAGAACCTGGAATAGATAGTGGGACAACTGCATGCGTTGCT 958
consensus_9296#1      ------------------------------------------------------------
                                                                                  

consensus_9296#0      GTTCTTGTACCAGTCAATGGTGTTGTACGCTTGTATGTTGCTAATGCTGGCGATTCACGA 1018
consensus_9296#1      ------------------------------------------------------------
                                                                                  

consensus_9296#0      GCTGTACTCTGTCGTGGTGGTGCTGCAGTCGATTTATCAGTTGATC 1064
consensus_9296#1      ----------------------------------------------
                                                                    




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)