These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9298#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1261 fasta sequence [AGCATACACAAAAAC-AAAAAAAAACACCAAG-AAGGATAAAAAATAAATCTGAGCACGATCAACAAAAGTAAACATAAACGGAACTGAATTTTCTTCTGTCAATCACACAAACTATTCTCCTATAATCCAAGCTGATCACCATTACAATTATCAATCACTGACTATTTAGACAGGAGATAATAATAATAATAACTTTATTTTACCCATAACAAAATCTGAATAAAGATAGGTAAGTCAGAATAGATATTTGTGTCTGTGGTATATGTGCTTTAGAATACACATCCACAAACAATAGCTATTATTATTACTAAGAGTGGGATGCCGAAGCAGATCATGAAACGACTGACGAAACAGGAGATGCAAGTCTATGATATCCTGGTGGGGAATGACCAAGTACAGCA-CCTTCAGTAAGAACTACAGTTGATATATCCGATCCTGGAACATCGTAACGTGGCTGCAAGAGTAGATTTTCCAAGACTGAACGAAGACCTCGAGCTCCTGTATGTTGACTTAATGCTAGTCGAGCAATAGCTTTTAAAGCATCAGGAGTGACTCTCAGTTCACAACCATCAATATTAAAAAGTAATTGATATTGTTTTATCAGTGCATTACGTGGTTCTGTAAGAACACGAACAAGCATTTCTTCATTCAATGAATGTAGAGCAGTAATTATAGGGAAACGACCAACAAATTCCGGTATCATCCCATAAGTAATAAGGTCATTAGCTTCAACTTCTTGTAATAATTTATCAC-GTTCATCGTTTTCTTCATGAGCTGAACTTTCGAAACTTTGAAATAAAT-TTAGAGAATCTGTCGCACTTGGATTTACTGGTGAAGTGCATTTATCTTGTGCAGTCGATTCACTCATAGATGTCAACATATCAAATCCAATAGTCTTTTTATGTTTTCGTCGACTAATTATCTTGTCAAGTCCATTGAATGCACCACAGGCTATAAAAAGTATGTTGGTTGTATCCACGACAAAAGTTTCACCACGTAATTTACGCGGACTTTTGACATCAGGTACGTTAACAACTGAACCTTCTAAAAGTTTTAACATAGCCTGTTGAACACCTTCGCCACTAACATCTCGTGTAGAAAGATGATGCCCAGTTTTAGAGCTTATTTTGTCTATTTCATCTAGAACCACTATACCTTGTTGAGCAAGTTCCACATTGAAATTCGCATTTTGTAATAATCTACCAATGGTTGATTCAACATCTTCACCAACATAACCAGCTTGGGTTATACTTGTACAATC] [+] EMBL CD197052 [AGCATACACAAAAACAAAAAAAAAACACCAAGAAAGGATAAAAAATAAATCTGAGCACGATCAACAAAAGTAAACATAAACGGAACTGAATTTTCTTCTGTCAATCACACAAACTATTCTCCTATAATCCAAGCTGATCACCATTACAATTATCAATCACTGACTATTTAGACAGGAGATAATAATAATAATAACTTTATTTTACCCATAACAAAATCTGAATAAAGATAGGTAAGTCAGAATAGATATTTGTGTCTGTGGTATATGTGCTTTAAAATACACTTCCACAAACAATAGCTATTATTATTACTAAGAGTGGGATGCCAAAGCAGATCATGAAACGACTGACGAAACAGGAGATGCAAGTCTATGATATCCTGGTGGGGAATGACCAAGTACAGCACCCTTCAGTA ] [+] EMBL CD138709 [ CATACACAAAAAC AAAAAAAAACACCAAG AAGGATAAAAAATAAATCTGAGCACGATCAACAAAAGTAAACATAAACGAAACTGAATTTTCTTCTGTCAATCACACAAACTATTCTCCTATAATCCAAGCTGATCACCATTACAATTATCAATCACTGACTATTTAGACAGGAGATAATAATAATAATAACTTTATTTTACCCATAACAAAATCTGAATAAAGATAGGTAAGTCAGAATAGATATTTGTGTCTGTGGTATATGTGCTTTAGAATACACATTCACAAACAATAGCTATTATTATTACTAAGAGTGGGATGCCGAAGCAGATTATGAAAC ] [-] EMBL CD116094 [ ACACAAAAAC AAAAAAAAACACCAAG AAGGATAAAAAATAAATCTGAGCACGATCAACAAAAGTAAACATAAACGGAACTGAATTTTCTTCTGTCAATCACACAAACTATTCTCCTATAATCCAAGCTGATCACCATTACAATTATCAATCACTGACTATTTAGACAGGAGATAATAATAATAATAACTTTATTTTACCCATAACAAAATCTGAATAAAGATAGGTAAGTCAGAATAGATATTTGT ] [+] EMBL CD128738 [ anctagCACTGACTATTTAGACAGGAGATCATAATAATAATAACTTTATTTTACCCATAACAAAATCTGAATAAAGATAGGTAAGTCAGAATAGATATTTGTGTCTGTGGTATATGTGCTTTAGAATACACATCCACAAACAATAGCTATTATTATTATTAAGAGTGGGATGCCGAAGCAGATCATGAAACGACTGACGAAACAGGAGATGCAAGTCTATGATATTCTGGTGGGGAATGACCAAGTACAGCA CCTTCAGTAAGAACTACAGTTGATATATCCGATCCTGGAACATCGTAACGTGGCTGCAAGAGTAGATTTTCCAAGACTGAACGAAGACCTCGAGCTCCTGTATGTTGACTTAATGCTAGTCGAGCAATAGCTTTTAAAGCATCAGGAGTGACTCTCAGTTCACAACCATCAATATTAAAAAGTAATTGATATTGTTTTATCAGTGCATTACGTGGTTCTGTAAGAACACGAACAAGCATTTCTTCATTCAATGAATGTAGAGCAGTAATTATAGGGAAACGACCAACAAATTCCGGTATCATCCCATAAGTAATAAGGTCATTAGCTTCAACTTCTTGTAATAATTTATCAC GTTCATCGTTTTCTTCATGAGCTGAACTNTCGAAACTTTGAAATAAAT TTAGAGAATCTGTCGCACTTGGATTTACTGGTGAAGTGCATTTATCTTGTGCAGTCGATTCACTCATAGATGTCAACATATCAAATCCAATAGTCTTTTTA ] [+] EMBL CD160952 [ ATCCTGGAACATCGTAACGTGGCTGCAAGAGTAGATTTTCCAAGACTGAACGAAGGCCTCGAGCTCCTGTATGTTGACTTAATGCTAGTCGAGCAATAGCTTTTGAAGCATCAGGAGTGACTCTCAGTTCACAACCATCAATATTAAAAAGTAATTGATATTGTTTTATCAGTGCATTACGTGGTTCTGTAAGAACACGAACAAGCATTTCTTCATTCAATGAATGTAGAGCAGTAATTATAGGGAAACGACCAACAAATTCCGGTATCATCCCATAAGTAATAAGGTCATTAGCTTCAACTTCTTGTAATAATTTATCAC GTTCATCATTTTCTTCATGAGCTGAACTTTCGAAACTTTGAAATAAAT TTAGAGAATCTGTCGCACTTGGATTTACTGGTGAAGTGCATTTATCTTGTGCAGTCGATTCACTCATAGATGTCAACATATCAAATCCAATAGTCTTTTTATGTTTTCGTCGACTAATTATCTTGTCAAGT ] [-] EMBL CD194775 [ AACAAGCATTTCTTCATTCAATGAATGTAGAGCAGTAATTATAGGGAAACGACCAACAAATTCCGGTATCATCCCATAAGTAATAAGGTCATTAGCTTCAACTTCTTGTAATAATTTATCAC GTTCATCATTTTCTTCATGAGCTGAACTTTCGAAACTTTGAAATAAAT TTAGAGAATCTGTCGCACTTGGATTTACTGGTGAAGTGCATTTATCTTGTGCAGTCGATTCACTCATAGATGTCAACATATCAAATCCAATAGTCTTTTTATGTTTTCGTCGACTAATTATCTTGTCAAGTCCATTGAATGCACCACAGGCTATAAAAAGTATGTTGGTTGTATCCACGACAAAAGCTTCACCACGTAATTTACGCGGACTTTTGACATCAGGTACGTTAACAACTGAACCTTCTAAAAGTTTTAACATAGCCTGTTGAACACCTTCGCCACTAACATCTCGTGTAGAAAGATGATGCCCA ] [+] EMBL CD190436 [ aATCACGGCGCATCGTTTTCTTCATGAGCTGCACTCTAGAAACTTCGAAATACATCTTAGAGAATCTGTCGCACTTGGATTTACTGGCGAAGTGTTTACATCTTGTGCAGTCGATTCACTCATAGATGTCAACATATCAAATCCAATAGTCTTTTTATGTTTTCGTCGACTAATTATCTTGTCAAGTCCATTGAATGCACCACAGGCTATAAAAAGTATGTTGGTTGTATCCACGACAAAAGTTTCACCACGTAATTTACGCGGACTTTTGACATCAGGTACGTTAACAACTGAACCTTCTAAAAGTTTTAACATAGCCTGTTGAACACCTTCGCCACTAACATCTCGTGTAGAAAGATGATGCCCAGTTTTAGAGCTTATTTTGTCTATTTCATCTAGAACCACTATACCTTGTTGAGCAAGTTCCACATTGAAATT ] [-] EMBL CD190329 [ ATCAC GTTCATCGTTTTCTTCATGAGCTGAACTTTCGAAACTNTGAAATAAAT TTAGAGAATCTGTCGCACTTGGATTTACTGGTGAAGTGCATTTATCTTGTGCAGTCGATTCACTCATAGATGTCAACATATCAAATCCAATAGTCTTTTTATGTTTTCGTCGACTAATTATCTTGTCAAGTCCATTGAATGCACCACAGGCTATAAAAAGTATGTTGGTTGTATCCACGACAAAAGTTTCACCACGTAATTTACGCGGACTTTTGACATCAGGTACGTTAACAACTGAACCTTCTAAAAGTTTTAACATAGCCTGTTGAACACCTTCGCCACTAACATCTCGTGTAGAAAGATGATGCCCAGTTTTAGAGCTTATTTTGTCTATTTCATCTAGAACCACTATACCTTGTTGAGCAAGTTCCACATTGAAATTCGCATTTTGTAATAATCTACCAATGGTTGATTCAACATCTTCACCAACATAACCAGCTTGGGTTATACTTGTACAATC] [-] EMBL CD196659 [ aTTTTCTTCATGAGCTGAACTTTCGAAACTTTGAAATAAAT TTAGAGAATCTGTCGCACTTGGATTTACTGGTGAAGTGCATTTATCTTGTGCAGTCGATTCACTCATAGATGTCAACATATCAAATCCAATAGTCTTTTTATGTTTTCGTCGACTAATTATCTTGTCAAGTCCATTGAATGCACCACAGGCTATAAAAAGTATGTTGGTTGTATCCACGACAAAAGTTTCACCACGTAATTTACGCGGACTTTTGACATCAGGTACGTTAACAACTGAACCTTCTAAAAGTTTTAACATAGCCTGTTGAACACCTTCGCCACTAACATCTCGTGTAGAAAGATGATGCCCAGTTTTAGAGCTTATTTTGTCTATTTCATCTAGAACCACTATACCTTGTTGAGCAAGTTCCACATTGAAATTCGCATTTTGTAATAATCTACCAATGGTTGATTC ] clustalw multiple alignements is not computed in this case |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||