cluster # 9302

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Schistosoma mansoni
cluster # 9302 cluster # 9302 Sequences # 9 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9302#0 length = 697 sequences # 6

consensus_9302#1 length = 541 sequences # 3

consensusID : consensus_9302#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 697
fasta sequence

                              [GTTGATTTAGGGTCAAAAATGTCAACCCCAGCACAAAGACGACTTCTGCGTGACTTGAAACGCCTACAGTCTGACCCACCTCCTGGTATTTGTGGTTCTCCTGTTGAAG-ACAATGTTATGATTTGGAA-TGCTGTTATCTTTGGACCGGACGATACTGCTTTTGAGGATGGAACATTCAAACTTCGTTTAGACTTCACAGAAGACTATCCTAATAAGCCTCCAAGAGTTGTATTCACGTCCAAAATGTTTCATCCAAACGTATATGCTGATGGTAGCATATGTCTAGACATTCTTTCCAACGCTTGGAGTCCCACTTATGATGTACTAGCCATATTGACATCTATTCAGTCTCTTTTGGATGAGCCAAATCCTAACTCCCCAGCTAACAGCATGGCAGCTCAACTTTATGTGG-AAAATAGACGCGAATATGAGAAACGCGTTCGTGCTTGTGTTGAGGAAAGCTGGTACGAAGAAGATGTGTGAAGA-TAAAGTTTGAGTAGTAATGACCACAG-TAATTCGTTCTTGTACATAACTA-TTTTTCTTGTACAATCCTAACTGGCATTTAGT-CTCGCGTTTCCATAATTTCATTTCTTCTGGTTGGATGCGCCTTGAGAAACCTATTATTTCACTTAAATGTAATTTCCTTGCCTGTGATTTAGAGACTCATCTGCTTGTGTTAAAGTCGAGTCAATAAAAT]

[+] EMBL CD080641             [GTTGATTTAGGGTCAAAAATGTCAACCCCAGCACAAAGACGACTTCTGCGTGACTTGAAACGCCTACAGTCTGACCCACCTCCTGGTATTTGTGGTTCTCCTGTTGAAG ACAATGTTATGATTTGGAA TGCTGTTATCTTTGGACCGGACGATACTGCTTTTGAGGATGGAACATTCAAACTTCGTTTAGACTTCACAGAAGACTATCCTAATAAGCCTCCAAGAGTTGTATTCACGTCCAAAATGTTTCATCCAAACGTATATGCTGATGGTAGCATATGTCTAGACATTCTTTCCAACGCTTGGAGTTCCACTTATGATGTACTAACCATATTGACATCTATTCAGTCTCTTTTGGATGAACCAAATTCTAACTTCCCAACTTACAGCATGGCAGCTTAACTTTATGTGG AAAATAGACGCCAATATTAGAAACGCGTTCGTGCTTGTGTTGAAGAAAGCTTGTACCAAGAAGATGTGTGAAGATTAAGGTTGGAGTAGT ATGACCACAGTTATTTCGTTCTTGTACATTACTATTTTTTCTTGTACAATNCTAACTGGCATTTAGTCCTCGCGTTTTCATAATTTCATTTCTTCTGGTTGGATGCGCCTTGAGAAACCTATTATTTCACTTAAATGTAATTTCCTTGCCTGTGATTTAGAGACTCATCTGCTTGTGTTAAAGTCGAGTCAATAAAA ]
[-] EMBL CD142617             [                                                     acTGAAACGCCTACAGTCTGACCCACCTCCTGGTATTTGTGGTTCTCCTG TGAAGNACAATGTTATGA TTGGAANTGCTGTTATCTTTGGACCGGACGATACTGCTTTTGAGGATGGAACATTCAAACTTCGTTTAGACTCNACAGAAGACTATCCTAATAAGCCTCCAAGAGTTGTATTCACGTCCAGGATGTTTCATCCAAACGTATATGCTGATGGTAGCATATGTCTAGACATTCTTTCCAACGCTTGGAGTCCCACTTATGATGTACTAGCCATATTGACATCTATTCAGTCTCTTTTGGATGAGCCAAATCCTAACTCCCCAGCTAACAGCATGGCAGCTCAACTTTATGTGG AAAATAGACGCGAATATGA                                                                                                                                                                                                                                                                              ]
[-] EMBL CD074554             [                                                                TACAGTCTGACCCACCTCCTGGTATTTGTGGTTCTCCTGTTGAAG ACAATGTTATGATTTGGAA TGCTGTTATCTTTGGACCGGACGATACTGCTTTTGAGGATGGAACATTCAAACTTCGTTTAGACTTCACAGAAGACTATCCTAATAAGCCTCCAAGAGTTGTATTCACGTCCAAAATGTTTCATCCAAACGTATATGCTGATGGTAGCATATGTCTAGACATTCTTTCCAACGCTTGGAGTCCCACTTATGATGTACTAGCCATATTGACATCTATTCAGTCTCTTTTGGATGAGCCAAATCCTAACTCCCCAGCTAACAGCATGGCAGCTCAACTTTATGTGG AAAATAGACGCGAATATGAGAAACGCGTTCGTGCTTGTGTTGAGGAAAGCTGGTACGAAGAAGATGTGTGAAGA TAAAGTTTGAGTAGTAATGACCCCAG TAATTCGTTCTTGTACATAACTA TTTTTCTTGTACAATCCTAACTGGCATTTAGT CTCGCGTTTCCATAATTTCATTTCTTCTGGTTGGATGCGCCTTGAGAAACCTATTATTTCACTTAAATGTAATTTCCTTGCCTGTGATTTAGAGACTCATCTGCTTGTGTTAAAATCGAGTCAATAAAAT]
[-] EMBL CD073040             [                                                                                                                                                                                TTCAAACTTCGTTTAGACTTCACAGAAGACTATCCTAATAAGCCTCCAAGAGTTGTATTCACGTCCAAAATGTTTCATCCAAACGTATATGCTGATGGTAGCATATGTCTAGACATTCTTTCCAACGCTTGGAGTCCCACTTATGATGTACTAGCCATATTGACATCTATTCAGTCTCTTTTGGATGAGCCAAATCCTAACTCCCCAGCTAACAGCATGGCAGCTCAACTTTATGTGG AAAATAGACGCGAATATGAGAAACGCGTTCGTGCTTGTGTTGAGGAAAGCTGGTACGAAGAAGATGTGTGAAGA TAAAGTTTGAGTAGTAATGACCACAG TAATTCGTTCTTGTACATAACTA TTTTTCTTGTACAATCCTAACTGGCATTTAGT CTCGCGTTTCCATAATTTCATTTCTTCTGGTTGGATGCGCCTTGAGAAACCTATTATTTCACTTAAATGTAATTTCCTTGCCTGTGATTTAGAGACTCATCTGCTTGTGTTAAAGTCGAGTCAATAAAAT]
[+] EMBL AA791336             [                                                                                                                                                                                                                                                                                                                       CCCACTTATGATGTACTAGCCATATTGACATCTATTCAGTCTCTTTTGGATGAGCCAAATCCTAACTCCCCAGCTAACAGCATGGCAGCTCAACTTTA GTGGTAAAATAGACGCGAATAGTAGAAACGCGTT GT CGT TGTAGAGGAAAGCTGG ATCAAGAAGATGTGTGAA                                                                                                                                                                                                                         ]
[-] EMBL CD096129             [                                                                                                                                                                                                                                                                                                                                                                                                                                           AATATGAGAAACGCGTTCGTGCTTGTGTTGAGGAAAGCTGGTACGAAGAAGATGTGTGAAGA TAAAGTTTGAGTAGTAATGACCACAG TAATTCGTTCTTGTACATAACTA TTTTTCTTGT                                                                                                                                                         ]




>consensus_9302#0
GTTGATTTAGGGTCAAAAATGTCAACCCCAGCACAAAGACGACTTCTGCGTGACTTGAAA
CGCCTACAGTCTGACCCACCTCCTGGTATTTGTGGTTCTCCTGTTGAAGACAATGTTATG
ATTTGGAATGCTGTTATCTTTGGACCGGACGATACTGCTTTTGAGGATGGAACATTCAAA
CTTCGTTTAGACTTCACAGAAGACTATCCTAATAAGCCTCCAAGAGTTGTATTCACGTCC
AAAATGTTTCATCCAAACGTATATGCTGATGGTAGCATATGTCTAGACATTCTTTCCAAC
GCTTGGAGTCCCACTTATGATGTACTAGCCATATTGACATCTATTCAGTCTCTTTTGGAT
GAGCCAAATCCTAACTCCCCAGCTAACAGCATGGCAGCTCAACTTTATGTGGAAAATAGA
CGCGAATATGAGAAACGCGTTCGTGCTTGTGTTGAGGAAAGCTGGTACGAAGAAGATGTG
TGAAGATAAAGTTTGAGTAGTAATGACCACAGTAATTCGTTCTTGTACATAACTATTTTT
CTTGTACAATCCTAACTGGCATTTAGTCTCGCGTTTCCATAATTTCATTTCTTCTGGTTG
GATGCGCCTTGAGAAACCTATTATTTCACTTAAATGTAATTTCCTTGCCTGTGATTTAGA
GACTCATCTGCTTGTGTTAAAGTCGAGTCAATAAAAT

consensusID : consensus_9302#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 541
fasta sequence

                              [CGACGCAGGTTCAAGTATTCGTTACATTTCTGACGTTTGTGATGTACATCTTGTTCTAGAAATGTCAACCCCAGCACAAAGACGACTTCTGCGTGACTTGAAACGCCTACAGTCTGACCCACCTCCTGGTATTTGTGGTTCTCCTGTTGAAGACAATGTTATGATTTGGAATGCTGTTATCTTTGGACCGGACGATACTGCTTTTGAGGATGGAACATTCAAACTTCGTTTAGACTTCACAGAAGACTATCCTAATAAGCCTCCAAGAGTTGTATTCACGTCCAAAATGTTTCATCCAAACGTATATGCTGATGGTAGCATATGTCTAGACATTCTTTCCAACGCTTGGAGTCACACTTATGATGTACTAGCCATATTGACATCTATTCAGTCTCTTTTGGATGAGCCAAATCCTAACTCCCCAGCTAACAGCATGGCAGCTCAACTTTATGTGGAAAATAGACGCGAATATGAGAAACGCGTTACTGCTTGTGTTGAGGAAAGCTGGTACGAAGAAGATGTGTGAAGATACAGTTTGAGT]

[-] EMBL BG930724             [CGACGCAGGTTCAAGTATTCGTTACATTTCTGACGTTTGTGATGTACATCTTGTTCTAGAAATGTCAACCCCAGCACAAAGACGACTTCTGCGTGACTTGAAACGCCTACAGTCTGACCCACCTCCTGGTATTTGTGGTTCTCCTGTTGAAGACAATGTTATGATTTGGAATGCTGTTATCTTTGGACCGGACGATACTGCTTTTGAGGATGGAACATTCAAACTTCGTTTAGACTTCACAGAAGACTATCCTAATAAGCCTCCAAGAGTTGTATTCACGTCCAAAATGTTTCATCCAAACGTATATGCTGATGGTAGCATATGTCTAGACATTCTTTCCAACGCTTGGAc                                                                                                                                                                                              ]
[+] EMBL CD112423             [                   CGTTACATTTCTGACGTTTGTGATGTACATCTTGTTCTAGAAATGTCAACCCCAGCACAAAGACGACTTCTGCGTGACTTGAAACGCCTACAGTCTGACCCACCTCCTGGTATTTGTGGTTCTCCTGTTGAAGACAATGTTATGATTTGGAATGCTGTTATCTTTGGACCGGACGATACTGCTTTTGAGGATGGAACATTCAAACTTCGTTTAGACTTCACAGAAGACTATCCTAATAAGCCTCCAAGAGTTGTATTCACGTCCAAAATGTTTCATCCAAACGTATATGCTGATGGTAGCATATGTCTAGACATTCTTTCCAACGCTTGGAGTCACACTTATGATGTACTAGCCATATTGACATCTATTCAGTCTCTTTTGGA                                                                                                                                           ]
[+] EMBL CD078573             [                        acgaggTGACCTTTGTGATGTACATCTTGTTCTAGAAATGTCAACCCCAGCACAAAGACGACTTCTGCGTGACTTGAAACGCCTACAGTCTGACCCACCTCCTGGTATTTGTGGTTCTCCTGTTGAAGACAATGTTATGATTTGGAATGCTGTTATCTTTGGACCGGACGATACTGCTTTTGAGGATGGAACATTCAAACTTCGTTTAGACTTCACAGAAGACTATCCTAATAAGCCTCCAAGAGTTGTATTCACGTCCAAAATGTTTCATCCAAACGTATATGCTGATGGTAGCATATGTCTAGACATTCTTTCCAACGCTTGGAGTCCCACTTATGATGTACTAGCCATATTGACATCTATTCAGTCTCTTTTGGATGAGCCAAATCCTAACTCCCCAGCTAACAGCATGGCAGCTCAACTTTATGTGGAAAATAGACGCGAATATGAGAAACGCGTTACTGCTTGTGTTGAGGAAAGCTGGTACGAAGAAGATGTGTGAAGATACAGTTTGAGT]




>consensus_9302#1
CGACGCAGGTTCAAGTATTCGTTACATTTCTGACGTTTGTGATGTACATCTTGTTCTAGA
AATGTCAACCCCAGCACAAAGACGACTTCTGCGTGACTTGAAACGCCTACAGTCTGACCC
ACCTCCTGGTATTTGTGGTTCTCCTGTTGAAGACAATGTTATGATTTGGAATGCTGTTAT
CTTTGGACCGGACGATACTGCTTTTGAGGATGGAACATTCAAACTTCGTTTAGACTTCAC
AGAAGACTATCCTAATAAGCCTCCAAGAGTTGTATTCACGTCCAAAATGTTTCATCCAAA
CGTATATGCTGATGGTAGCATATGTCTAGACATTCTTTCCAACGCTTGGAGTCACACTTA
TGATGTACTAGCCATATTGACATCTATTCAGTCTCTTTTGGATGAGCCAAATCCTAACTC
CCCAGCTAACAGCATGGCAGCTCAACTTTATGTGGAAAATAGACGCGAATATGAGAAACG
CGTTACTGCTTGTGTTGAGGAAAGCTGGTACGAAGAAGATGTGTGAAGATACAGTTTGAG
T

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9302#0      -------------------------------------------GTTGATTTAGGGTCAAA 17
consensus_9302#1      CGACGCAGGTTCAAGTATTCGTTACATTTCTGACGTTTGTGATGTACATCTTGTTCTAGA 60
                                                                 **  ** * *    * *

consensus_9302#0      AATGTCAACCCCAGCACAAAGACGACTTCTGCGTGACTTGAAACGCCTACAGTCTGACCC 77
consensus_9302#1      AATGTCAACCCCAGCACAAAGACGACTTCTGCGTGACTTGAAACGCCTACAGTCTGACCC 120
                      ************************************************************

consensus_9302#0      ACCTCCTGGTATTTGTGGTTCTCCTGTTGAAGACAATGTTATGATTTGGAATGCTGTTAT 137
consensus_9302#1      ACCTCCTGGTATTTGTGGTTCTCCTGTTGAAGACAATGTTATGATTTGGAATGCTGTTAT 180
                      ************************************************************

consensus_9302#0      CTTTGGACCGGACGATACTGCTTTTGAGGATGGAACATTCAAACTTCGTTTAGACTTCAC 197
consensus_9302#1      CTTTGGACCGGACGATACTGCTTTTGAGGATGGAACATTCAAACTTCGTTTAGACTTCAC 240
                      ************************************************************

consensus_9302#0      AGAAGACTATCCTAATAAGCCTCCAAGAGTTGTATTCACGTCCAAAATGTTTCATCCAAA 257
consensus_9302#1      AGAAGACTATCCTAATAAGCCTCCAAGAGTTGTATTCACGTCCAAAATGTTTCATCCAAA 300
                      ************************************************************

consensus_9302#0      CGTATATGCTGATGGTAGCATATGTCTAGACATTCTTTCCAACGCTTGGAGTCCCACTTA 317
consensus_9302#1      CGTATATGCTGATGGTAGCATATGTCTAGACATTCTTTCCAACGCTTGGAGTCACACTTA 360
                      ***************************************************** ******

consensus_9302#0      TGATGTACTAGCCATATTGACATCTATTCAGTCTCTTTTGGATGAGCCAAATCCTAACTC 377
consensus_9302#1      TGATGTACTAGCCATATTGACATCTATTCAGTCTCTTTTGGATGAGCCAAATCCTAACTC 420
                      ************************************************************

consensus_9302#0      CCCAGCTAACAGCATGGCAGCTCAACTTTATGTGGAAAATAGACGCGAATATGAGAAACG 437
consensus_9302#1      CCCAGCTAACAGCATGGCAGCTCAACTTTATGTGGAAAATAGACGCGAATATGAGAAACG 480
                      ************************************************************

consensus_9302#0      CGTTCGTGCTTGTGTTGAGGAAAGCTGGTACGAAGAAGATGTGTGAAGATAAAGTTTGAG 497
consensus_9302#1      CGTTACTGCTTGTGTTGAGGAAAGCTGGTACGAAGAAGATGTGTGAAGATACAGTTTGAG 540
                      ****  ********************************************* ********

consensus_9302#0      TAGTAATGACCACAGTAATTCGTTCTTGTACATAACTATTTTTCTTGTACAATCCTAACT 557
consensus_9302#1      T----------------------------------------------------------- 541
                      *                                                           

consensus_9302#0      GGCATTTAGTCTCGCGTTTCCATAATTTCATTTCTTCTGGTTGGATGCGCCTTGAGAAAC 617
consensus_9302#1      ------------------------------------------------------------
                                                                                  

consensus_9302#0      CTATTATTTCACTTAAATGTAATTTCCTTGCCTGTGATTTAGAGACTCATCTGCTTGTGT 677
consensus_9302#1      ------------------------------------------------------------
                                                                                  

consensus_9302#0      TAAAGTCGAGTCAATAAAAT 697
consensus_9302#1      --------------------