These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9302#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 697 fasta sequence [GTTGATTTAGGGTCAAAAATGTCAACCCCAGCACAAAGACGACTTCTGCGTGACTTGAAACGCCTACAGTCTGACCCACCTCCTGGTATTTGTGGTTCTCCTGTTGAAG-ACAATGTTATGATTTGGAA-TGCTGTTATCTTTGGACCGGACGATACTGCTTTTGAGGATGGAACATTCAAACTTCGTTTAGACTTCACAGAAGACTATCCTAATAAGCCTCCAAGAGTTGTATTCACGTCCAAAATGTTTCATCCAAACGTATATGCTGATGGTAGCATATGTCTAGACATTCTTTCCAACGCTTGGAGTCCCACTTATGATGTACTAGCCATATTGACATCTATTCAGTCTCTTTTGGATGAGCCAAATCCTAACTCCCCAGCTAACAGCATGGCAGCTCAACTTTATGTGG-AAAATAGACGCGAATATGAGAAACGCGTTCGTGCTTGTGTTGAGGAAAGCTGGTACGAAGAAGATGTGTGAAGA-TAAAGTTTGAGTAGTAATGACCACAG-TAATTCGTTCTTGTACATAACTA-TTTTTCTTGTACAATCCTAACTGGCATTTAGT-CTCGCGTTTCCATAATTTCATTTCTTCTGGTTGGATGCGCCTTGAGAAACCTATTATTTCACTTAAATGTAATTTCCTTGCCTGTGATTTAGAGACTCATCTGCTTGTGTTAAAGTCGAGTCAATAAAAT] [+] EMBL CD080641 [GTTGATTTAGGGTCAAAAATGTCAACCCCAGCACAAAGACGACTTCTGCGTGACTTGAAACGCCTACAGTCTGACCCACCTCCTGGTATTTGTGGTTCTCCTGTTGAAG ACAATGTTATGATTTGGAA TGCTGTTATCTTTGGACCGGACGATACTGCTTTTGAGGATGGAACATTCAAACTTCGTTTAGACTTCACAGAAGACTATCCTAATAAGCCTCCAAGAGTTGTATTCACGTCCAAAATGTTTCATCCAAACGTATATGCTGATGGTAGCATATGTCTAGACATTCTTTCCAACGCTTGGAGTTCCACTTATGATGTACTAACCATATTGACATCTATTCAGTCTCTTTTGGATGAACCAAATTCTAACTTCCCAACTTACAGCATGGCAGCTTAACTTTATGTGG AAAATAGACGCCAATATTAGAAACGCGTTCGTGCTTGTGTTGAAGAAAGCTTGTACCAAGAAGATGTGTGAAGATTAAGGTTGGAGTAGT ATGACCACAGTTATTTCGTTCTTGTACATTACTATTTTTTCTTGTACAATNCTAACTGGCATTTAGTCCTCGCGTTTTCATAATTTCATTTCTTCTGGTTGGATGCGCCTTGAGAAACCTATTATTTCACTTAAATGTAATTTCCTTGCCTGTGATTTAGAGACTCATCTGCTTGTGTTAAAGTCGAGTCAATAAAA ] [-] EMBL CD142617 [ acTGAAACGCCTACAGTCTGACCCACCTCCTGGTATTTGTGGTTCTCCTG TGAAGNACAATGTTATGA TTGGAANTGCTGTTATCTTTGGACCGGACGATACTGCTTTTGAGGATGGAACATTCAAACTTCGTTTAGACTCNACAGAAGACTATCCTAATAAGCCTCCAAGAGTTGTATTCACGTCCAGGATGTTTCATCCAAACGTATATGCTGATGGTAGCATATGTCTAGACATTCTTTCCAACGCTTGGAGTCCCACTTATGATGTACTAGCCATATTGACATCTATTCAGTCTCTTTTGGATGAGCCAAATCCTAACTCCCCAGCTAACAGCATGGCAGCTCAACTTTATGTGG AAAATAGACGCGAATATGA ] [-] EMBL CD074554 [ TACAGTCTGACCCACCTCCTGGTATTTGTGGTTCTCCTGTTGAAG ACAATGTTATGATTTGGAA TGCTGTTATCTTTGGACCGGACGATACTGCTTTTGAGGATGGAACATTCAAACTTCGTTTAGACTTCACAGAAGACTATCCTAATAAGCCTCCAAGAGTTGTATTCACGTCCAAAATGTTTCATCCAAACGTATATGCTGATGGTAGCATATGTCTAGACATTCTTTCCAACGCTTGGAGTCCCACTTATGATGTACTAGCCATATTGACATCTATTCAGTCTCTTTTGGATGAGCCAAATCCTAACTCCCCAGCTAACAGCATGGCAGCTCAACTTTATGTGG AAAATAGACGCGAATATGAGAAACGCGTTCGTGCTTGTGTTGAGGAAAGCTGGTACGAAGAAGATGTGTGAAGA TAAAGTTTGAGTAGTAATGACCCCAG TAATTCGTTCTTGTACATAACTA TTTTTCTTGTACAATCCTAACTGGCATTTAGT CTCGCGTTTCCATAATTTCATTTCTTCTGGTTGGATGCGCCTTGAGAAACCTATTATTTCACTTAAATGTAATTTCCTTGCCTGTGATTTAGAGACTCATCTGCTTGTGTTAAAATCGAGTCAATAAAAT] [-] EMBL CD073040 [ TTCAAACTTCGTTTAGACTTCACAGAAGACTATCCTAATAAGCCTCCAAGAGTTGTATTCACGTCCAAAATGTTTCATCCAAACGTATATGCTGATGGTAGCATATGTCTAGACATTCTTTCCAACGCTTGGAGTCCCACTTATGATGTACTAGCCATATTGACATCTATTCAGTCTCTTTTGGATGAGCCAAATCCTAACTCCCCAGCTAACAGCATGGCAGCTCAACTTTATGTGG AAAATAGACGCGAATATGAGAAACGCGTTCGTGCTTGTGTTGAGGAAAGCTGGTACGAAGAAGATGTGTGAAGA TAAAGTTTGAGTAGTAATGACCACAG TAATTCGTTCTTGTACATAACTA TTTTTCTTGTACAATCCTAACTGGCATTTAGT CTCGCGTTTCCATAATTTCATTTCTTCTGGTTGGATGCGCCTTGAGAAACCTATTATTTCACTTAAATGTAATTTCCTTGCCTGTGATTTAGAGACTCATCTGCTTGTGTTAAAGTCGAGTCAATAAAAT] [+] EMBL AA791336 [ CCCACTTATGATGTACTAGCCATATTGACATCTATTCAGTCTCTTTTGGATGAGCCAAATCCTAACTCCCCAGCTAACAGCATGGCAGCTCAACTTTA GTGGTAAAATAGACGCGAATAGTAGAAACGCGTT GT CGT TGTAGAGGAAAGCTGG ATCAAGAAGATGTGTGAA ] [-] EMBL CD096129 [ AATATGAGAAACGCGTTCGTGCTTGTGTTGAGGAAAGCTGGTACGAAGAAGATGTGTGAAGA TAAAGTTTGAGTAGTAATGACCACAG TAATTCGTTCTTGTACATAACTA TTTTTCTTGT ] consensusID : consensus_9302#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 541 fasta sequence [CGACGCAGGTTCAAGTATTCGTTACATTTCTGACGTTTGTGATGTACATCTTGTTCTAGAAATGTCAACCCCAGCACAAAGACGACTTCTGCGTGACTTGAAACGCCTACAGTCTGACCCACCTCCTGGTATTTGTGGTTCTCCTGTTGAAGACAATGTTATGATTTGGAATGCTGTTATCTTTGGACCGGACGATACTGCTTTTGAGGATGGAACATTCAAACTTCGTTTAGACTTCACAGAAGACTATCCTAATAAGCCTCCAAGAGTTGTATTCACGTCCAAAATGTTTCATCCAAACGTATATGCTGATGGTAGCATATGTCTAGACATTCTTTCCAACGCTTGGAGTCACACTTATGATGTACTAGCCATATTGACATCTATTCAGTCTCTTTTGGATGAGCCAAATCCTAACTCCCCAGCTAACAGCATGGCAGCTCAACTTTATGTGGAAAATAGACGCGAATATGAGAAACGCGTTACTGCTTGTGTTGAGGAAAGCTGGTACGAAGAAGATGTGTGAAGATACAGTTTGAGT] [-] EMBL BG930724 [CGACGCAGGTTCAAGTATTCGTTACATTTCTGACGTTTGTGATGTACATCTTGTTCTAGAAATGTCAACCCCAGCACAAAGACGACTTCTGCGTGACTTGAAACGCCTACAGTCTGACCCACCTCCTGGTATTTGTGGTTCTCCTGTTGAAGACAATGTTATGATTTGGAATGCTGTTATCTTTGGACCGGACGATACTGCTTTTGAGGATGGAACATTCAAACTTCGTTTAGACTTCACAGAAGACTATCCTAATAAGCCTCCAAGAGTTGTATTCACGTCCAAAATGTTTCATCCAAACGTATATGCTGATGGTAGCATATGTCTAGACATTCTTTCCAACGCTTGGAc ] [+] EMBL CD112423 [ CGTTACATTTCTGACGTTTGTGATGTACATCTTGTTCTAGAAATGTCAACCCCAGCACAAAGACGACTTCTGCGTGACTTGAAACGCCTACAGTCTGACCCACCTCCTGGTATTTGTGGTTCTCCTGTTGAAGACAATGTTATGATTTGGAATGCTGTTATCTTTGGACCGGACGATACTGCTTTTGAGGATGGAACATTCAAACTTCGTTTAGACTTCACAGAAGACTATCCTAATAAGCCTCCAAGAGTTGTATTCACGTCCAAAATGTTTCATCCAAACGTATATGCTGATGGTAGCATATGTCTAGACATTCTTTCCAACGCTTGGAGTCACACTTATGATGTACTAGCCATATTGACATCTATTCAGTCTCTTTTGGA ] [+] EMBL CD078573 [ acgaggTGACCTTTGTGATGTACATCTTGTTCTAGAAATGTCAACCCCAGCACAAAGACGACTTCTGCGTGACTTGAAACGCCTACAGTCTGACCCACCTCCTGGTATTTGTGGTTCTCCTGTTGAAGACAATGTTATGATTTGGAATGCTGTTATCTTTGGACCGGACGATACTGCTTTTGAGGATGGAACATTCAAACTTCGTTTAGACTTCACAGAAGACTATCCTAATAAGCCTCCAAGAGTTGTATTCACGTCCAAAATGTTTCATCCAAACGTATATGCTGATGGTAGCATATGTCTAGACATTCTTTCCAACGCTTGGAGTCCCACTTATGATGTACTAGCCATATTGACATCTATTCAGTCTCTTTTGGATGAGCCAAATCCTAACTCCCCAGCTAACAGCATGGCAGCTCAACTTTATGTGGAAAATAGACGCGAATATGAGAAACGCGTTACTGCTTGTGTTGAGGAAAGCTGGTACGAAGAAGATGTGTGAAGATACAGTTTGAGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9302#0 -------------------------------------------GTTGATTTAGGGTCAAA 17 consensus_9302#1 CGACGCAGGTTCAAGTATTCGTTACATTTCTGACGTTTGTGATGTACATCTTGTTCTAGA 60 ** ** * * * * consensus_9302#0 AATGTCAACCCCAGCACAAAGACGACTTCTGCGTGACTTGAAACGCCTACAGTCTGACCC 77 consensus_9302#1 AATGTCAACCCCAGCACAAAGACGACTTCTGCGTGACTTGAAACGCCTACAGTCTGACCC 120 ************************************************************ consensus_9302#0 ACCTCCTGGTATTTGTGGTTCTCCTGTTGAAGACAATGTTATGATTTGGAATGCTGTTAT 137 consensus_9302#1 ACCTCCTGGTATTTGTGGTTCTCCTGTTGAAGACAATGTTATGATTTGGAATGCTGTTAT 180 ************************************************************ consensus_9302#0 CTTTGGACCGGACGATACTGCTTTTGAGGATGGAACATTCAAACTTCGTTTAGACTTCAC 197 consensus_9302#1 CTTTGGACCGGACGATACTGCTTTTGAGGATGGAACATTCAAACTTCGTTTAGACTTCAC 240 ************************************************************ consensus_9302#0 AGAAGACTATCCTAATAAGCCTCCAAGAGTTGTATTCACGTCCAAAATGTTTCATCCAAA 257 consensus_9302#1 AGAAGACTATCCTAATAAGCCTCCAAGAGTTGTATTCACGTCCAAAATGTTTCATCCAAA 300 ************************************************************ consensus_9302#0 CGTATATGCTGATGGTAGCATATGTCTAGACATTCTTTCCAACGCTTGGAGTCCCACTTA 317 consensus_9302#1 CGTATATGCTGATGGTAGCATATGTCTAGACATTCTTTCCAACGCTTGGAGTCACACTTA 360 ***************************************************** ****** consensus_9302#0 TGATGTACTAGCCATATTGACATCTATTCAGTCTCTTTTGGATGAGCCAAATCCTAACTC 377 consensus_9302#1 TGATGTACTAGCCATATTGACATCTATTCAGTCTCTTTTGGATGAGCCAAATCCTAACTC 420 ************************************************************ consensus_9302#0 CCCAGCTAACAGCATGGCAGCTCAACTTTATGTGGAAAATAGACGCGAATATGAGAAACG 437 consensus_9302#1 CCCAGCTAACAGCATGGCAGCTCAACTTTATGTGGAAAATAGACGCGAATATGAGAAACG 480 ************************************************************ consensus_9302#0 CGTTCGTGCTTGTGTTGAGGAAAGCTGGTACGAAGAAGATGTGTGAAGATAAAGTTTGAG 497 consensus_9302#1 CGTTACTGCTTGTGTTGAGGAAAGCTGGTACGAAGAAGATGTGTGAAGATACAGTTTGAG 540 **** ********************************************* ******** consensus_9302#0 TAGTAATGACCACAGTAATTCGTTCTTGTACATAACTATTTTTCTTGTACAATCCTAACT 557 consensus_9302#1 T----------------------------------------------------------- 541 * consensus_9302#0 GGCATTTAGTCTCGCGTTTCCATAATTTCATTTCTTCTGGTTGGATGCGCCTTGAGAAAC 617 consensus_9302#1 ------------------------------------------------------------ consensus_9302#0 CTATTATTTCACTTAAATGTAATTTCCTTGCCTGTGATTTAGAGACTCATCTGCTTGTGT 677 consensus_9302#1 ------------------------------------------------------------ consensus_9302#0 TAAAGTCGAGTCAATAAAAT 697 consensus_9302#1 -------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||