These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9306#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1306 fasta sequence [ACGGGTATATCGAAGGGCTTCGGTTTTGTGGATTTCGCTTCTGTCCATGAAGCAAGACGTTGGATTGGACCACCAGCAAAGGTATATTTCGTGTTGCGACGCTATAGAAATACGACTGNATGTACANGCACTCCTTCGCAACCANGCTTGGATTCACNTGATACATTCATTCTGGAAGATGCCCCCGAGGTTACTTAGGTCCAGTCAAAGCTTTATAGACATCAGTCCTCCTGGCGTTGTCAAGAAAGTCTCCACCGGGAAGAACTGGANNTCTGTTCAAGGGTGGGTTCTAGTTCANNCAACTTCAGAAAGGGCGAAGATCAAGTAGCCCATAAATAGTTCCAGTTGGCCGGAGGTTTCTCCAAGTGGCAATCTTCTCAACAAAACTCCGGTCAGATNANGTGTTGATCTCATCGGTACAACTCCATGGTAATACTCTCGGTCTTGAGATGCTTGGATGCACTAACTACGGAAGATGACATTTGCCAGGTTTTTCAAGATACGGCCGACGTAAAGGTGCGACAGTGTCATGTCATGAGAGATGAAGTAACACATGCTCCCAGGTGCTTTGCTTTTGCGGAGCTTCCCACGGTTGCTGATGCTTACAAAGTCATGGATATAGTAAACAAAGAATTCAAGC-TT-TTTGAGGTCGGAGGAAAAGCAGTAACAGTCTCGTACGCAAAGAACACTTTCAATACTATTATGGCAACACTAAAAACGGAAGGATCATATAATGCCCAGTTAAACAGTAGTCGCAACTTGGCTCTGGATTTAGCGCATGCAGCTATGGCCGCACAAAATAATAACATATCACCTGATACTGTTGCAATGAATGCTGTTGCTGCATCAGCATTACTGAGTCAAACTTCAAACAATGGAGCTGCTGTTGCCCAGGCAGCGATACAACAAAAACAAACTGAACAACATGTTTTATCAGCTCTGACGAAATCTTTGCGTAACCATTCGGAACATACTGTCTCGTCTAACTATGCACCGTCTATGGCAGCACTCGTGGCATCTGGTCAGCAGCTCCCACCTCCTTCGTTCCCGTTCAATGCTGTGACGGCATCTACGACTACATATCCATTTCCAGACACATCTAAGTACATATACGATGAGTCTACTCGCTTTTACTATGATCCTGTCACTGGTCTAATGTATGAACCTAACTCAAAATACTTCTACGACCGCGGAAGTCAGCAATATTATTACTGGGATCAAACGAAGAGTACATATCTTCCTGTACCACAAACAAATCCTCAATCCAATTCCGTCGATAATGCGGCTTCCAACTCTCAAACCGATA] [+] EMBL CD069598 [ACGGGTATATCGAAGGGCTTCGGTTTTGTGGATTTCGCTTCTGTCCATGAAGCAAGACGTTGGATTGGACCACCAGCAAAGGTATATTTCGTGTTGCGACGCTATAGAAATACGACTGNATGTACANGCACTCCTTCGCAACCANGCTTGGATTCACNTGATACATTCATTCTGGAAGATGCCCCCGAGGTTACTTAGGTCCAGTCAAAGCTTTATAGACATCAGTCCTCCTGGCGTTGTCAAGAAAGTCTCCACCGGGAAGAACTGGANNTCTGTTCAAGGGTGGGTTCTAGTTCANNCAACTTCAGAAAGGGCGAAGATCAAGTAGCCCATAAATAGTTCCAGTTGGCCGGAGGTTTCTCCAAGTGGCAATCTTCTCAACAAAACTCCGGTCAGATNANGTGTTGATCTCATCGGTACAACTCCATGGTAATACTCTCGGTCTTGAGATGCTTGGATGCACTAACTACGGAAGATGACATTTGCCAGGTTTTTCAAGATACGGCCGACGTAAAGGTGCGACAGTGTCATGTCATGAGAGATGAAGTAACACATGCTC ] [+] EMBL CD116057 [ tCGGTC GAT GGTGTTGATCTCATCGGTACAACTCCAT GTAATACTCTC GTCTTGAGATGCTTGGATGCACTAACTACGGAAGATGACATTTGCCAGGTTTTTCAAGATACGGCCGACGTAAAGGTGCGACAGTGTCATGTAATGAGCGATGAAGTAACACATGCTTCCAGGTGCTTTGCTTTTGCGGAGCTTCCCACGGTTGCTGATGCTTACAAAGTCATGGATATAGTAAACAAAGAATTCAAGC TT TTTGAGGTCGGAGGAAAAGCAGTAACAGTCTCGTACGCAAAGAACACTTTCAATACTATTATGGCAACACTAAAAACGGAA ] [+] EMBL CD069372 [ AAAGAATTCAAGCGTTGTTTGAGGTCGGAGGAAAAGCAGTAACAGTCTCGTACGCAAAGAACACTTTCAATACTATTATGGCAACACTAAAAACGGAAGGATCATATAATGCCCAGTTAAACAGTAGTCGCAACTTGGCTCTGGATTTAGCGCATGCAGCTATGGCCGCACAAAATAATAACATATCACCTGATACTGTTGCAATGAATGCTGTTGCTGCATCAGCATTACTGAGTCAAACTTCAAACAATGGAGCTGCTGTTGCCCAGGCAGCGATACAACAAAAACAAACTGAACAACATGTTTTATCAGCTCTGACGAAATCTTTGCGTAACCATTCGGAACATACTGTCTCGTCTAACTATGCACCGTCTATGGCAGCACTC ] [-] EMBL CD180413 [ GTCTCGTACGCAAAGAACACTTTCAATACTATTATGGCAACACTAAAAACGGAAGGATCATATAATGCCCAGTTAAACAGTAGTCGCAACTTGGCTCTGGATTTAGCGCATGCAGCTATGGCCGCACAAAATAATAACATATCACCTGATACTGTTGCAATGAATGCTGTTGCTGCATCAGCATTACTGAGTCAAACTTCAAACAATGGAGCTGCTGTTGCCCAGGCAGCGATACAACAAAAACAAACTGAACAACATGTTTTATCAGCTCTGACGAAATCTTTGCGTAACCATTCGGAACATACTGTCTCGTCTAACTATGCACCGTCTATGGCAGCACTCGTGGCATCTGGTCAGCAGCTCCCAC ] [+] EMBL CD116459 [ ACTGAGTCAAACTTCAAACAATGGAGCTGCTGTTGCCCAGGCAGCGATACAACAAAAACAAACTGAACAACATGTTTCATCAGCTCTGACGAAATCTTTGCGTAACCATTCGGAACATACTGTCTCGTCTAACTATGCACC ] [-] EMBL CD089828 [ TGACGAAATCTTTGCGTAACCATTCGGAACATACTGTCTCGTCTAACTATGCACCGTCTATGGCAGCACTCGTGGCATCTGGTCAGCAGCTCCCACCTCCTTCGTTCCCGTTCAATGCTGTGACGGCATCTACGACTACATATCCATTTCCAGACACATCTAAGTACATATACGATGAGTCTACTCGCTTTTACTATGATCCTGTCACTGGTCTAATGTATGAACCTAACTCAAAATACTTCTACGACCGCGGAAGTCAGCAATATTATTACTGGGATCAAACGAAGAGTACATATCTTCCTGTACCACAAACAAATCCTCAATCCAATTCCGTCGATAATGCGGCTTCCAACTCTCAAACCGATA] consensusID : consensus_9306#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 434 fasta sequence [ATCGAAGGGCTTCGGTTTTGTGGATTTCGCTTCTGTCCATGAAGCAAGACGTTGGATGGACCACCAAAAAGGTATATTTCGTGTGCGACGCTATGAAATACGACTGATGTACAGCACTCCTCGCAACCAGCTTGATTCACTGATACATCATTCTGGATATGCCCCCGGGTTACTTGGTCCGTCAAGCTTTATGACTCGTCCTCCTGCGTTGTCAGAAGTCTCCACCGGAGACTGGATCTGTTCAAGGTGTTCTAGTCACAACTTCAGAAGGCGAGATCAGTGCTATAAATGTCAGTTGCCGAGGTCTCAAGTGCAATCTCTCACAAACTCGGTCGATGGTGTTGATCTCATCGGTACAACTCCATGTAATACTCTCGTCTTGAGATGCTTGGATGCACTAACTACGGAAGATGACATTTGCCAGGTTTTTCAAG] [+] EMBL CD069388 [ATCGAAGGGCTTCGGTTTTGTGGATTTCGCTTCTGTCCATGAAGCAAGACGTTGGATGGACCACCAAAAAGGTATATTTCGTGTGCGACGCTATGAAATACGACTGATGTACAGCACTCCTCGCAACCAGCTTGATTCACTGATACATCATTCTGGATATGCCCCCGGGTTACTTGGTCCGTCAAGCTTTATGACTCGTCCTCCTGCGTTGTCAGAAGTCTCCACCGGAGACTGGATCTGTTCAAGGTGTTCTAGTCACAACTTCAGAAGGCGAGATCAGTGCTATAAATGTCAGTTGCCGAGGTCTCAAGTGCAATCTCTCACAAACTCGGTCGATGGTGTTGATCTCATCGGTACAACTCCATGTAATACTCTCGTCTTGAGATGCTTGGATGCACTAACTACGGAAGATGACATTTGCCAGGTTTTTCAAG] consensusID : consensus_9306#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 388 fasta sequence [GATCCCCTCATAGGTGCGCAGGAGGACGAGTCATAAAGCTTGACGGACCAAGTAATCTGGTGGCATCTCCAGAATGATGTATCAATGAGTCAAGCTGGTTGCGAGGAGTGCTGTACATCAGTCGTATTTCATAGCGTCGCACACGAAATATACCCTAAATAAAGAGGAAAACACATTTATATAAGGCTCTTTCATACACACTAGGCCCATGATTCCAAACTATACGACAATTACGAGGTGAAGATAAGCATGTTTAGGAAACTTGACAAAGATAACCTGTACTGTGAATGCATTACTTTTTGGTGGGCCATCCAACGTCTTGCTTCATGGACAGAAGCGAAATCCACAAAACCGAAGCCCTTCGATATACCTGCGAACCTATGAGGGT] [+] EMBL CD060803 [GATCCCCTCATAGGTGCGCAGGAGGACGAGTCATAAAGCTTGACGGACCAAGTAATCTGGTGGCATCTCCAGAATGATGTATCAATGAGTCAAGCTGGTTGCGAGGAGTGCTGTACATCAGTCGTATTTCATAGCGTCGCACACGAAATATACCCTAAATAAAGAGGAAAACACATTTATATAAGGCTCTTTCATACACACTAGGCCCATGATTCCAAACTATACGACAATTACGAGGTGAAGATAAGCATGTTTAGGAAACTTGACAAAGATAACCTGTACTGTGAATGCATTACTTTTTGGTGGGCCATCCAACGTCTTGCTTCATGGACAGAAGCGAAATCCACAAAACCGAAGCCCTTCGATATACCTGCGAACCTATGAGGGT] [+] EMBL CD061048 [ CGCAGGAGGACGAGTCATAAAGCTTGACGGACCAAGTAACCCGGGGGCATCTTCAGAATGATGTATCAATGAATGAAGCTGGTTGCGAGGAGTGCTGTACATCAATCGTATTTCATAGCGTCGCACACGAAATATACCCTAAATGAAGAGGAAAACACATTTATATAAGGCTCTTTCATACAGACTAGGCCCATGATTCCAAACTATACGACAATTACGAGGTGAAAATAAGCATGTTTATGAAACTTGACAAAGATAACCTGTACTGTGAATGCATTACTTTTTGGTGGGCCATCCAACGTCTTGCTTCATGGACAGAAGCGAAATCCACAAAACCGAAGCC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9306#0 ACGGGTATATCGAAGGGCTTCGGTTTTGTGGATTTCGCTTCTGTCCATGAAGCAAGACGT 60 consensus_9306#1 --------ATCGAAGGGCTTCGGTTTTGTGGATTTCGCTTCTGTCCATGAAGCAAGACGT 52 consensus_9306#2 --GATCCCCTCATAGGTGCGCAGGAGGACGAGTCATAAAGCT--TGACGGACCAAGTAAT 56 ** *** * * * * ** * * * **** * consensus_9306#0 TGGATTGGACCACCAGCAAAGGTATATTTCGTGTTGCGACGCTATAGAAATACGACTGNA 120 consensus_9306#1 TGGAT-GGACCACCAA-AAAGGTATATTTCGTGT-GCGACGCTAT-GAAATACGACTGA- 107 consensus_9306#2 CTGGTGGCATCTCCAG-AATGATGTATCA-ATGA-GTCAAGCTGG-TTGCGAGGAGTGC- 111 * * * * * *** ** * * *** ** * * *** * ** ** consensus_9306#0 TGTACANGCACTCCTTCGCAACCANGCTTGGATTCACNTGATACATTCATTCTGGAAGAT 180 consensus_9306#1 TGTACAG-CACTCCT-CGCAACCAG--CTTGATTCACT-GATACAT-CATTCTGGAT-AT 160 consensus_9306#2 TGTACAT-CAGTCGTATTTCAT-AG--CGTCGCACACGAAATATACCCTAAATAAAG-AG 166 ****** ** ** * * * *** *** * * * * * consensus_9306#0 GCCCCCGAGGTTACTTAGGTCCAGTCAAAGCTTTATAGACATCAGTCCTCCTGGCGTTGT 240 consensus_9306#1 GCCCCCG-GGTTACTT-GGTCC-GTCAA-GCTTTATG---ACTCGTCCTCCTG-CGTTGT 212 consensus_9306#2 GAAAACACATTTATATAAGGCT-------CTTTCATACACACTAGGCCCAT----GATTC 215 * * *** * * * ** ** * * ** * * consensus_9306#0 CAAGAAAGTCTCCACCGGGAAGAACTGGANNTCTGTTCAAGGGTGGGTTCTAGTTCANNC 300 consensus_9306#1 CA--GAAGTCTCCACCGGAGA---CTGGATCT--GTTCAAGG---TGTTCTAGT---CAC 259 consensus_9306#2 CA---AACTATACGACAATTA-----CGAGGTGAAGATAAGCA--TGTTTAGGA------ 259 ** ** * * * * * ** * *** *** * consensus_9306#0 AACTTCAGAAAGGGCGAAGATCAAGTAGCCCATAAATAGTTCCAGTTGGCCGGAGGTTTC 360 consensus_9306#1 AACTTCAGAAGGCG---AGATCA-GTG--CTATAAATG---TCAGTTG--CCGAGGTCTC 308 consensus_9306#2 AACTTGACAA-------AGATAACCTGTACTGTGAATG-CATTACTTTTTGGTGGGCCAT 311 ***** * ** **** * * * * *** * ** ** consensus_9306#0 TCCAAGTGGCAATCTTCTCAACAAAACTCCGGTCAGATNANGTGTTGATCTCATCGGTAC 420 consensus_9306#1 ---AAGTG-CAATCTCT----CACAAACTCGGTCG---ATGGTGTTGATCTCATCGGTAC 357 consensus_9306#2 CCAACGTC-TTGCTTCATGGACAGAAGCGAAATCCACAAAACCG--AAGCCCTTCGATAT 368 * ** * ** ** ** * * * * *** ** consensus_9306#0 AACTCCATGGTAATACTCTCGGTCTTGAGATGCTTGGATGCACTAACTACGGAAGATGAC 480 consensus_9306#1 AACTCCATG-TAATACTCTCG-TCTTGAGATGCTTGGATGCACTAACTACGGAAGATGAC 415 consensus_9306#2 ACCTGCGAACCTATGAGGGT---------------------------------------- 388 * ** * ** consensus_9306#0 ATTTGCCAGGTTTTTCAAGATACGGCCGACGTAAAGGTGCGACAGTGTCATGTCATGAGA 540 consensus_9306#1 ATTTGCCAGGTTTTTCAAG----------------------------------------- 434 consensus_9306#2 ------------------------------------------------------------ consensus_9306#0 GATGAAGTAACACATGCTCCCAGGTGCTTTGCTTTTGCGGAGCTTCCCACGGTTGCTGAT 600 consensus_9306#1 ------------------------------------------------------------ consensus_9306#2 ------------------------------------------------------------ consensus_9306#0 GCTTACAAAGTCATGGATATAGTAAACAAAGAATTCAAGCTTTTTGAGGTCGGAGGAAAA 660 consensus_9306#1 ------------------------------------------------------------ consensus_9306#2 ------------------------------------------------------------ consensus_9306#0 GCAGTAACAGTCTCGTACGCAAAGAACACTTTCAATACTATTATGGCAACACTAAAAACG 720 consensus_9306#1 ------------------------------------------------------------ consensus_9306#2 ------------------------------------------------------------ consensus_9306#0 GAAGGATCATATAATGCCCAGTTAAACAGTAGTCGCAACTTGGCTCTGGATTTAGCGCAT 780 consensus_9306#1 ------------------------------------------------------------ consensus_9306#2 ------------------------------------------------------------ consensus_9306#0 GCAGCTATGGCCGCACAAAATAATAACATATCACCTGATACTGTTGCAATGAATGCTGTT 840 consensus_9306#1 ------------------------------------------------------------ consensus_9306#2 ------------------------------------------------------------ consensus_9306#0 GCTGCATCAGCATTACTGAGTCAAACTTCAAACAATGGAGCTGCTGTTGCCCAGGCAGCG 900 consensus_9306#1 ------------------------------------------------------------ consensus_9306#2 ------------------------------------------------------------ consensus_9306#0 ATACAACAAAAACAAACTGAACAACATGTTTTATCAGCTCTGACGAAATCTTTGCGTAAC 960 consensus_9306#1 ------------------------------------------------------------ consensus_9306#2 ------------------------------------------------------------ consensus_9306#0 CATTCGGAACATACTGTCTCGTCTAACTATGCACCGTCTATGGCAGCACTCGTGGCATCT 1020 consensus_9306#1 ------------------------------------------------------------ consensus_9306#2 ------------------------------------------------------------ consensus_9306#0 GGTCAGCAGCTCCCACCTCCTTCGTTCCCGTTCAATGCTGTGACGGCATCTACGACTACA 1080 consensus_9306#1 ------------------------------------------------------------ consensus_9306#2 ------------------------------------------------------------ consensus_9306#0 TATCCATTTCCAGACACATCTAAGTACATATACGATGAGTCTACTCGCTTTTACTATGAT 1140 consensus_9306#1 ------------------------------------------------------------ consensus_9306#2 ------------------------------------------------------------ consensus_9306#0 CCTGTCACTGGTCTAATGTATGAACCTAACTCAAAATACTTCTACGACCGCGGAAGTCAG 1200 consensus_9306#1 ------------------------------------------------------------ consensus_9306#2 ------------------------------------------------------------ consensus_9306#0 CAATATTATTACTGGGATCAAACGAAGAGTACATATCTTCCTGTACCACAAACAAATCCT 1260 consensus_9306#1 ------------------------------------------------------------ consensus_9306#2 ------------------------------------------------------------ consensus_9306#0 CAATCCAATTCCGTCGATAATGCGGCTTCCAACTCTCAAACCGATA 1306 consensus_9306#1 ---------------------------------------------- consensus_9306#2 ---------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||