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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9315#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 834 fasta sequence
[TCGAGGACCAAGCCGAAGTTGATCTATTCAAAACTCAATCTACAGAAGTAGTCATTTTCTTCCACTATCTACAGATCATGTTGGGTCACAATCCACGAATATCCCGAGTCCATATATTCCTCTATCTGTCCAGACATCAGATTGTGGATGGGGATGCATGTTTCGATGTGGACAAATGTTGCTTGCTCAAGCCCTAGTAGTTCATTTTTTGGGCAGAAATTGGAGGCTAACAAAAAATCAAAGAGATTCGGATTTCAGCCTTCAAATTATCAAATGGTTCAATGATTCTTGGTCCCCATTTTCTCCGTTATCTTTGCATCGTTTAGTTCAAATGAGTGATAGAAAGCCAGGTGAATGGTGCGGGCCATCTTCAATTTGCTCGGCAATCTTACGTGTGATGGCAAAAGGAAGTTCATTGGACAGCCGCTTAAGCCAAGTACAGGTGTATTTAGCTCGTGACAGAGTTATATATCGTGAGGAAATTATAGATCTTGCAAGAGGATTACACACTTCATATCAGTATCAACCCAAGATATATTTCACTGATCACACAGCTTTATATCGTTCACAATCTGATCAGACTAACGACTCACACAGCTTCAAACCAACAGCTATCTTATTACTCATCCCACTGATGTTCGGAAAAGGAAATCGCATTAACCCACGTTATATTCAAGTGGTACTGCGTCTATTTTCGGATCCAGCATTTGTAGGCTTAATCGGTGGTCGTCGAAAACATTCCAGCTATTATGTTGGATGTCAAAATAATTCGCTAATTTACTTGGATCCACATTTTACTCGACCC-CCCATCCACTGAATTCCCCTAAATTTTCA]
[+] EMBL CD082101 [TCGAGGACCAAGCCGAAGTTGATCTATTCAAAACTCAATCTACAGAAGTAGTCATTTTCTTCCACTATCTACAGATCATGTTGGGTCACAATCCACGAATATCCCGAGTCCATATATTCCTCTATCTGTCCAGACATCAGATTGTGGATGGGGATGCATGTTTCGATGTGGACAAATGTTGCTTGCTCAAGCCCTAGTAGTTCATTTTTTGGGCAGAAATTGGAGGCTAACAAAAAATCAAAGAGATTCGGATTTCAGCCTTCAAATTATCAAATGGTTCAATGATTCTTGGTCCCCATTTTCTCCGTTATCTTTGCATCGTTTAGTTCAAATGAGTGATAGAAAGCCAGGTGAATGGTGCGGGCCATCTTCAATTTGCTCGGCAATCTTACGTGTGATGGCAAAAGGAAGTTCATTGGACAGCCGCTTAAGCCAAGTACAGGTGTATTTAGCTCGTGACAGAGTTATATATCGTGAGGAAATTATAGATCTTGCAAGAGGATTACACACTTCATATCAGTATCAACCCAAGATATATTTCACTGATCACACAGCTTTATATCGTTCACAATCTGATCAGACTAACGACTCACACAGCTTCAAACCAACAGCTATCTTATTACTCATCCCACTGATGTTCGGAAAAGGAAATCGCATTAACCCACGTTATATTCAAGTGGTACTGCGTCTAT ]
[+] EMBL CD152985 [ AAACTCAATCAACAGAAGTAGTCATTTTATTCCACTATCTACAGATCATGTTGGGTCACAATCCACGAATATCCCGAGTCCATATATTCCTCTATCTGTCCAGACATCAGACTGTGGATGGGGATGCATGTTTCGATGTGGACAAATGTTGCTTGCTCAAGCCCTAGTAGTTCATTTTTTGGGCAGAAATTGGAGGCTAACAAAAAATCAAAGAGATTCGGATTTCAGCCTTCAAATTATCAAATGGTTCAATGATTCTTGGTCCCCATTTTCTCCGTTATCTTTGCATCGTTTAGTTCAAATGAGTGATAGAAAGCCAGGTGAATGGTGCGGGCCATCTTCAATTTGCTCGGCCTTCTTACGTGTGATGGCAAAAGGAAGTTCATTGGACAGCCGCTTATGCCAAGTACAGGTGTATTTAGCTCGTGACAGAGTTATATATCGTGAGGAAATTATAGATCTTGCAAGAGGATTACACACTTCATATCAGTATCAACCCAAGATATATTTCACTGATCACACAGCTTTATATCGTTCACAATCTGATCAGACTAACGACTCAC ]
[+] EMBL CD120748 [ AGATTGTGGATGGGGATGCATGTTTCGATGTGGACAAATGTTGCTTGCTCAAGCCCTAGTAGTTCATTTTTTGGGCAGAAATTGGAGGCTAACAAAAAATCAAAGAGATTCGGATTTCAGCCTTCAAATTATCAAATGGTTCAATGATTCTTGGTCCCCGTTTTCTCCGTTATCTTTGCATCGTTTAGTTCAAATGAGTGATAGAAAGCCAGGTGAATGGTGCGGGCCATCTTCAATTTGCTCGGCAATCTTACGTGTGATGGCAAAAGGAAG ]
[+] EMBL CD120628 [ AGATTGTGGATGGGGATGCATGTTTCGATGTGGACAAATGTTGCTTGCTCAAGCCCTAGTAGTTCATTTTTTGGGCAGAAATTGGAGGCTAACAAAAAATCAAAGAGATTCGGATTTCAGCCTTCAAATTATCAAATGGTTCAATGATTCTTGGTCCCCATTTTCTCCGTTATCTTTGCATCGTTTAGTTCAAATGAGTGATAGAGAGCCAGGTGAATGGTGCGGGCCATCTTCAATTTGCTCGGCAATCTTACGTGTGATGGCAAAAGGAAG ]
[+] EMBL CD120894 [ TAGTAGTTCATTTTTTGGGCAGAAATTGGAGGCTAACAAAAAATCAAAGAGATTCGGATTTCAGCCTTCAAATTATCAAATGGTTCAATGATTCTTGGTCCCCATTTTCTCCGTTATCTTTGCATCGTTTAGTTCAAATGAGTGATAGAAAGCCAGGTGAATGGTGCGGGCCATCTTCAATTTGCTCGGCAATCTTACGTGTGATGGCAAAAGGAAGTTCATTGGACAG ]
[+] EMBL BG931132 [ gtCTCGTGACAGAGTTATATATCGTGAGGAAATTATAGATCTCGCAAGAGGATTACACACTTCATATCAGTATCAACCCAAGATATATTTCACTGATCACACAGCTTTATATCGTTCACAATCTGATCAGACTAACGACTCACACAGCTTCAAACCAACAGCTATCTTATTACTCATCCCACTGATGTTCGGAAAAGGAAATCGCATTAACCCACGTTATATTCAAGTGGTACTGCGTCTATTTTCGGATCCAGCATTTGTAGGCTTAATCGGTGGTCGTCGAAAACATTCCAGCTATTATGTTGGATGTCAAAATAATTCGCTAATTTACTTGGATCCACATTTTACTCGACCC CCCATCCA ]
[+] EMBL CD142244 [ TTCAAGTGGTACTGCGTCTATTTTCGGATCCAGCATTTGTAGGCTTAATCGGTGGTCGTCGAAAACATTCCAGCTATTATGTTGGATGTCAAAATAATTCGCTAATTTACTTGGATCCACATTTTACTCAACCCACCCAAAATCTGAATTCCCCTAAATTTTCA]
consensusID : consensus_9315#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 606 fasta sequence
[GCTATACTCAAAAGGGTCACCCGATCATCCTGAAAATGAACCGAAATGAAAGGAATCGCATTCGCACTCAGATCAGAGTTTCTCGGAGCAAAAACTCAGCATCTGTTACCCGATCCAGCTTCACAACTCTTGACCACATACGTTCAGTGTGGAATCAGTTAAAGTTTGGTTGGTCCATTCAGTTCTGGCCAAATTTCGATCAAAATGCAATTATATATATGCTCGGTCGGTGCTATTTCTCTCCTACTTCCGACAATTCCCCAACTATCACAAGGGATATAATTTTGGATGGAGATTCCTCAGATTTTGCTTCACACCTTTGCAAAAATCTTTCTAGTACCTCTACCAATAATATGCCGTATTCACTATCTACCGAAAGACCAGCATCATGTGACTGTGAAAGTATTCAAGCCGAAGTTGATCTATTCAAAACTCAATCAAAAAACTTATCGATTTACAGCAGAAGTAGTCATTTTATTCCACTATCTACAGATCATGTTGGGTCACAATCCACGAATATCCCGAGTCCATATATTCCTCTATCTGTCCAGACATCAGATTGTGGATGGGGATGCATGTTTCGANTGTGGACAAATGTTGCTTGCT]
[+] EMBL CD130930 [GCTATACTCAAAAGGGTCACCCGATCATCCTGAAAATGAACCGAAATGAAAGGAATCGCATTCGCACTCAGATCAGAGTTTCTCGGAGCAAAAACTCAGCATCTGTTACCCGATCCAGCTTCACAACTCTTGACCACATACGTTCAGTGTGGAATCAGTTAAAGTTTGGTTGGTCCATTCAGTTCTGGCCAAATTTCGATCAAAATGCAATTATATATATGCTCGGTCGGTGCTATTTCTCTCCTACTTCCGACAATTCCCCAACTATCACAAGGGATATAATTTTGGATGGAGATTCCTCAGATTTTGCTTCACACCTTTGCAAAAATCTTTCTAGTACCTCTACCAATAATATGCCGTATTCACTATCTACCGAAAGACCAGCATCATGTGACTGT ]
[-] EMBL CD135307 [ CCGTATTCACTATCTACCGAAAGACCAGCATCATGTGACTGTGAAAGTATTCAAGCCGAAGTTGATCTATTCAAAACTCAATCAAAAAACTTATCGATTTACAGCAGAAGTAGTCATTTTATTCCACTATCTACAGATCATGTTGGGTCACAATCCACGAATATCCCGAGTCCATATATTCCTCTATCTGTCCAGACATCAGATTGTGGATGGGGATGCATGTTTCGANTGTGGACAAATGTTGCTTGCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9315#0 TCGAGGACCAAGCCGAAGTTGATCTATTCAAAACTCAATCTACAGAAGTAGTCATTTTCT 60
consensus_9315#1 ------------------------------------------------------------
consensus_9315#0 TCCACTATCTACAGATCATGTTGGGTCACAATCCACGAATATCCCGAGTCCATATATTCC 120
consensus_9315#1 ------------------------------------------------------------
consensus_9315#0 TCTATCTGTCCAGACATCAGATTGTGGATGGGGATGCATGTTTCGATGTGGACAAATGTT 180
consensus_9315#1 ---------------------------------------------------------GCT 3
* *
consensus_9315#0 GCTTGCTCAAGCCCTAGTAGTTCATTTTTTGGGCAGAAATTGGAGGCTAACAAAAAATCA 240
consensus_9315#1 ATACTCAAAAGGGTCACCCGATCATCCT---GAAAATGAACCGAAATGAAAGGAATCGCA 60
* *** * * **** * * * * ** ** ** **
consensus_9315#0 AAGAGATTCGGATTTCAGCCT-TCAAATTATCAAATGGTTCAATGATTCTTGGTCCCCAT 299
consensus_9315#1 TTCGCACTCAGATCAGAGTTTCTCGGAGCAAAAACTCAGCATCTGTTACCCGATCCAGCT 120
* ** *** ** * ** * * ** * ** * * * *** *
consensus_9315#0 TTTCTCCGTTATCTTTGCAT-CGTTTAGT-TCAAATGAGTGATAGAAAGCCAGGTGAAT- 356
consensus_9315#1 TCACAAC-TCTTGACCACATACGTTCAGTGTGGAATCAGTTAAAGTTTGGTTGGTCCATT 179
* * * * * *** **** *** * *** *** * ** * *** **
consensus_9315#0 -GGTGCGGGCCATCTTCAATTTGCTCGGCAATCTTACGTGTGATGGCAAAAGGAAGTTCA 415
consensus_9315#1 CAGTTCTGGCCAAATTTCGATCAAAATGCAATTATATATATGCTCGGTCGGTG----CTA 235
** * ***** ** * ***** ** * ** * * * *
consensus_9315#0 TTGGACAGCCGCTTAAGCCAAGTACAGGTGTATTTAGCTCGTGACAGAGTTATATATCGT 475
consensus_9315#1 TTTCTCTCCTACTTCCGACAATTCCCCAACTATC--ACAAGGGATATAATTTTGGAT--- 290
** * * *** * *** * * *** * * ** * * ** * **
consensus_9315#0 GAGGAAATTATAGATCTTGCA--AGAGGATTACACACTTCATATCAGTA--TCAACCCAA 531
consensus_9315#1 GGAGATTCCTCAGATTTTGCTTCACACCTTTGCAAAAATCTTTCTAGTACCTCTACCAAT 350
* ** **** **** * * ** ** * ** * **** ** *** *
consensus_9315#0 GATATATTTCACTGATCACACAGCTTTATATCGTTCACAATCTGATCAGACTAACGACTC 591
consensus_9315#1 AATATGCCGTATTCACTATCTACCGAAAGACCAG-CATCATGTGACTGTGAAAGTATTCA 409
**** * * * * * * * * * ** ** *** *
consensus_9315#0 ACACAGCTTCAAACCAACAGCTATCTTATTACTCATCCCACTGATGTTCGGAAAAGGAAA 651
consensus_9315#1 AGCCGAAGTTGATCTATTCAAAACTCAATCAAAAAACTTATCGATTTACAGCAGAAGTAG 469
* * * * * * * ** * * * * *** * * * * * * *
consensus_9315#0 TCGCATTAACCCACGTTATATTCAAGTGGTACTGCGTCTATTTTCGGATCCAGCATTTGT 711
consensus_9315#1 TCATTTTATTCCAC--TATCTACAGATCATGTTGGGTCA------CAATCCACGA---AT 518
** *** **** *** * ** * * ** *** ***** * *
consensus_9315#0 AGGCTTAATCGGTGGTCGTCGAAAACATTCCAGCTATTATGTTGGATGTCAAAATAATTC 771
consensus_9315#1 ATCCCGAGTCCATATATTCCTCTATCTGTCCAGACATCAGATTGTGGATGGGGATGCAT- 577
* * * ** * * * * ***** ** * *** * ** *
consensus_9315#0 GCTAATTTACTTGGATCCACATTTTACTCGACCCCCCATCCACTGAATTCCCCTAAATTT 831
consensus_9315#1 ---GTTTCGANTGTGGACAAATGTTGCTTGCT---------------------------- 606
** ** ** ** ** ** *
consensus_9315#0 TCA 834
consensus_9315#1 ---
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||