cluster # 9317

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Schistosoma mansoni
cluster # 9317 cluster # 9317 Sequences # 9 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9317#0 length = 371 sequences # 8

consensus_9317#1 length = 174 sequences # 1

consensusID : consensus_9317#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 371
fasta sequence

                              [CAGCTTCTTCATTGAA-CATGGATCTAAACTCTTACACGAGTAGGCTTACAAACGCTATGCGTTCAGTTAAACCTGCTCACACTCGACCTCAATCAACTGATGTTTTCGTTCAACCCGAATTACGACATAGTACACACGTCTTCGTTCGTCGAGACTCACATCGACGACCCCTCGAATCAGCATACGAAGGACCCTTCAAAGTTCTTCAACGCGAACCTAAGTACTATGTAGTCGATAAGAACGGTACGAAAGATAGCATCAGTATCGATCGACTCAAAGCTGCGTACCTAGAAGGAAACCCTAGCTACGTCGATTTTCCTTCGGTACAAGCAAACGACACAGCTACTACACTCGTAGTACCCTACACGATA]

[-] EMBL BG930241             [CAGCTTCTTC CTGAAGAATGGATTTAAACTCTTACTCGAGTAGGCTTACAAACGCTATGCGTTCAGTTAAACCTGCTCACACTCGACCTCAATCACCTGATGTTTTCGTTCAACCCG ATTACGACATAGTACACACGTCTTCGTTCGTCGAGACTCACATCGACGAg                                                                                                                                                                                                           ]
[+] EMBL BG931798             [CAGCTTCTTCATTGAA CATGGATCTAAACTCTTACACGAGTAGGCTTACAAACGCTATGCGTTCAGTTAAACCTGCTCACACTCGACCTCAATCAACTGATGTTTTCGTTCAACCCGAATTACGACATAGTACACACGTCTTCGTTCGTCGAGACTCACATCGACGACCCCTCGAATCAGCATACGAAGGACCCTTCAAAGTTCTTCAACGCGAACCTAAGTACTATGTAGTCGATAAGAACGGTACGAAAGATAGCATCAGTATCGATCGACTCAAAGCTGCGTACCTAGAAGGAAACCCTAGCTACGTCGATTTTCCTTCGGTACAAGCAAACGACACAGCTACTACACTCGTAGTACCCTACACGA  ]
[+] EMBL BG931658             [CAGCTTCTTCATTGAA CATGGATCTAAACTCTTACACGAGTAGGCTTACAAACGCTATGCGTTCAGTTAAACCTGCTCACACTCGACCTCAATCAACTGATGTTTTCGTTCAACCCGAATTACGACATAGTACACACGTCTTCGTTCGTCGAGACTCACATCGACGACCCCTCGAATCAGCATACGAAGGACCCTTCAAAGTTCTTCAACGCGAACCTAAGTACTATGTAGTCGATAAGAACGGTACGAAAGATAGCATCAGTATCGATCGACTCAAAGCTGCGTACCTAGAAGGAAACCCTAGCTACGTCGATTTTCCTTCGGTACAAGCAAACGACACAGCTACTACACTCGTAGTACCCTACACGA  ]
[+] EMBL BG931624             [CAGCTTCTTCATTGAA CATGGATCTAAACTCTTACACGAGTAGGCTTACAAACGCTATGCGTTCAGTTAAACCTGCTCACACTCGACCTCAATCAACTGATGTTTTCGTTCAACCCGAATTACGACATAGTACACACGTCTTCGTTCGTCGAGACTCACATCAACGACCCCTCGAATCAGCATACGAAGGACCCTTCAAAGTTCTTCAACGCGAACCTAAGTACTATGTAGTAGATAAGAACGGTACGAACGATAGCATCAGTATCGATCGACTCAAAGCAGCGTACTTAGAAGGAAACCCTAGCTACGTCGATTTCCCTTCGGTACAAGCAAACGACACAGCTACTACACTCGTAGTACCCTACACGA  ]
[+] EMBL BG931659             [CAGCTTCTTCATTGAA CATGGATCTAAACTCTTACACGAGTAGGCTTACAAACGCTATGCGTTCAGTTAAACCTGCTCACACTCGACCTCAATCAACTGATGTTTTCGTTCAACCCGAATTACGACATAGTACACACGTCTTCGTTCGTCGAGACTCACATCGACGACCCCTCGAATCAGCATACGAAGGACCCTTCAAAGTTCTTCAACGCGAACCTAAGTACTATGTAGTCGATAAGAACGGTACGAAAGATAGCATCAGTATCGATCGACTCAAAGCTGCGTACCTAGAAGGAAACCCTAGCTACGTCGATTTTCCTTCGGTACAAGCAAACGACACAGCTACTACACTCGTAGTACCCTACACGA  ]
[+] EMBL BG931608             [CAGCTTCTTCATTGAA CATGGATCTAAACTCTTACACGAGTAGGCTTACAAACGCTATGCGTTCAGTTAAACCTGCTCACACTCGACCTCAATCAACTGATGTTTTCGTTCAACCCGAATTACGACATAGTACACACGTCTTCGTTCGTCGAGACTCACATCGACGACCCCTCGAATCAGCATACGAAGGACCCTTCAAAGTTCTTCAACGCGAACCTAAGTACTATGTAGTCGATAAGAACGGTACGAAAGATAGCATCAGTATCGATCGACTCAAAGCTGCGTACCTAGAAGGAAACCCTAGCTACGTCGATTTTCCTTCGGTACAAGCAAACGACACAGCTACTACACTCGTAGTACCCTACACGA  ]
[+] EMBL BG931788             [CAGCTTCTTCATTGAA CATGGATCTAAACTCTTACACGAGTAGGCTTACAAACGCTATGCGTTCAGTTAAACCTGCTCACACTCGACCTCAATCAACTGATGTTTTCGTTCAACCCGAATTACGACATAGTACACACGTCTTCGTTCGTCGAGACTCACATCGACGACCCCTCGAATCAGCATACGAAGGACCCTTCAAAGTTCTTCAACGCGAACCTAAGTACTATGTAGTCGATAAGAACGGTACGAACGATAGCATCAGTATCGATCGACTCANAGCTGCGTACCTAGAAAGAAA CCTAGCTACGTCGATTTTCCTTCGGTACAAGCAAACGA                                  ]
[+] EMBL BG931679             [ AGCTTCTTCATTGAA CATGGATCTAAACTCTTACACGAGTAGGCTTACAAACGCTATGCGTTCAGTTAAACCTGCTCACACTCGACCTCAATCAACTGATGTTTTCGTTCAACCCGAATTACGACATAGTACACACGTCTTCGTTCGTCGAGACTCACATCGACGACCCCTCGAATCAGCATACGAAGGACCCTTCAAAGTTCTTCAACGCGAACCTAAGTACTATGTAGTCGATAAGAACGGTACGAACGATAGCATCAGTATCGATCGACTCAAAGCTGCGTACCTAGAAGGAAACCCTATCTACGTCGATTTTCCTTCGGTACAAGCAAACGACACAGCTACTACACTCGTAGTACCCTACACGATA]




>consensus_9317#0
CAGCTTCTTCATTGAACATGGATCTAAACTCTTACACGAGTAGGCTTACAAACGCTATGC
GTTCAGTTAAACCTGCTCACACTCGACCTCAATCAACTGATGTTTTCGTTCAACCCGAAT
TACGACATAGTACACACGTCTTCGTTCGTCGAGACTCACATCGACGACCCCTCGAATCAG
CATACGAAGGACCCTTCAAAGTTCTTCAACGCGAACCTAAGTACTATGTAGTCGATAAGA
ACGGTACGAAAGATAGCATCAGTATCGATCGACTCAAAGCTGCGTACCTAGAAGGAAACC
CTAGCTACGTCGATTTTCCTTCGGTACAAGCAAACGACACAGCTACTACACTCGTAGTAC
CCTACACGATA

consensusID : consensus_9317#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 174
fasta sequence

                              [TTTTTCTTCGGTACAAGCAAACGACACAGCTACTACACTCTGATGACCCTACACGACAACCGACACACAACTTGATCATTCGCTAACTGGATAGAAAAACCTAAAACAATGCGTTCTGGAAGATTGAGTAAGATTTCCAGAACACTTAACGAATATTGAGATGGTCATAAGCTT]

[+] EMBL AA952805             [TTTTTCTTCGGTACAAGCAAACGACACAGCTACTACACTCTGATGACCCTACACGACAACCGACACACAACTTGATCATTCGCTAACTGGATAGAAAAACCTAAAACAATGCGTTCTGGAAGATTGAGTAAGATTTCCAGAACACTTAACGAATATTGAGATGGTCATAAGCTT]




>consensus_9317#1
TTTTTCTTCGGTACAAGCAAACGACACAGCTACTACACTCTGATGACCCTACACGACAAC
CGACACACAACTTGATCATTCGCTAACTGGATAGAAAAACCTAAAACAATGCGTTCTGGA
AGATTGAGTAAGATTTCCAGAACACTTAACGAATATTGAGATGGTCATAAGCTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9317#0      CAGCTTCTTCATTGAACATGGATCTAAACTCTTACACGAGTAGGCTTACAAACGCTATGC 60
consensus_9317#1      ------------------------------------------------------------
                                                                                  

consensus_9317#0      GTTCAGTTAAACCTGCTCACACTCGACCTCAATCAACTGATGTTTTCGTTCAACCCGAAT 120
consensus_9317#1      ------TTTTTCTTCGGTACAAGCAAACGACA-CAGCTACTACACTCTGATGACCCTA-- 51
                            **   * *    ***  * * *   * ** **  *    **     **** *  

consensus_9317#0      TACGACATAGTACACACGTCTTCGTTCGTCGAGACTCACATCGACGACCCCTCGAATCAG 180
consensus_9317#1      CACGACAACCGACACACAACTTGATCATTCGCTAACTGGATAGAAAAACCTAAAACAATG 111
                       ******    ******  ***  *   ***  *     ** **  * **    *    *

consensus_9317#0      CATACGAAGGACCCTTCAAAGTTCTTCAACGCGAACCTAAGTACTATGTAGTCGATAAGA 240
consensus_9317#1      CGTTCTGGAAGATTGAGTAAGATTTCCAGAAC--ACTTAACGAATATTGAGATGGTCATA 169
                      * * *             *** * * **   *  ** ***  * ***  **  * * * *

consensus_9317#0      ACGGTACGAAAGATAGCATCAGTATCGATCGACTCAAAGCTGCGTACCTAGAAGGAAACC 300
consensus_9317#1      AGCTT------------------------------------------------------- 174
                      *   *                                                       

consensus_9317#0      CTAGCTACGTCGATTTTCCTTCGGTACAAGCAAACGACACAGCTACTACACTCGTAGTAC 360
consensus_9317#1      ------------------------------------------------------------
                                                                                  

consensus_9317#0      CCTACACGATA 371
consensus_9317#1      -----------