These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9320#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 607 fasta sequence [ATGTTTCAAATAAAGACCTTCTACAATGAGCTTAAGATATAACATTTAAACAACTACATTGTTGACAAGTGACAACTATCACTCTATTGAGATACTAGATCTCAACTATGACAAATAAATAATTAGACAGAATATTTTAAAATCTTTAATCTTACGATTAACATTCTCTGCATCGTTCTTAAAACACTTCTTTATCTCAGATGATTTTGAACTGTCCATATAATGTTTTGCTATTAATAGTCATGTGAATTGTTCTGTTTATACAACCACTTACCATATTTATCTTCAACGTTTCCCATTATCTTCACACATTCTGTATTTATTTCATCGATAATCTGTAATTTAAATACTCTAGTAATACAATTGAAATACTCTTCAATCGATGCCGTTTCATTAAAAGCTCTGTTGTTCATTTCATCTAACTTCTCTTGAAATTGACTCTTTTCATTAGTTATTAGTCGATCGTAATTCATCAATGATTTTTTAATTCCATAGATACTTTTTGACAGGTAAAATTGTTTCAGATCTATGCCATGACCATTAGAT-AAATGAAAAAGTAGATGGAACAAATTGACAAGAAGTGAACAAGATAGATTCATTTTTCTTT] [+] EMBL CD153454 [ATGTTTCAAATAAAGACCTTCTACAATGAGCTTAAGATATAACATTTAAACAACTACATTGTTGACAAGTGACAACTATCACTCTATTGAGATACTAGATCTCAACTATGACAAATAAATAATTAGACAGAATATTTTAAAATCTTTAATCTTACGATTAACATTCTCTGCATCGTTCTTAAAACACTTCTTTATCTCAGATGATTTTGAACTGTCCATATAATGTTTTGCTATTAATAGTCATGTGAATTGTTCTGTTTATACAACCACTTACCATATTTATCTTCAACGTTTCCCATTATCTTCACACATTCTGTATTTATTTCATCGATAATCTGTAATTTAAATACTCTAGTAATACAATTGAAATACTCTTCAATCGATGCCGTTTCATTAAAAGCTCTGTTGTTCATTTCATCTAACTTCTCTTGAAATTGACTCTTTTCATTAGTTATTAGTCGATCGCAATTCATCAATGATTTTTTAATTCCATAGATACTTTTTGACAGGTAAAATTGTTTCAGATCTATGCCATGACCATTAGAT ACATGACATAGTAGATGG ACCCATTGACAAGAAGTGAACAAGATAGATTCATTCTTCCTT] [+] EMBL CD153239 [ATGTTTCAAATAAAGACCTTCTACAATGAGCTTAAGATATAACATTTAAACAACTACATTGTTGACAAGTGACAACTATCACTCTATTGAGATACTAGATCTCAACTATGACAAATAAATAATTAGACAGAATATTTTAAAATCTTTAATCTTACGATTAACATTCTCTGCATCGTTCTTAAAACACTTCTTTATCTCAGATGATTTTGAACTGTCCATATAATGTTTTGCTATTAATAGTCATGTGAATTGTTCTGTTTATACAACCACTTACCATATTTATCTTCAACGTTTCCCATTATCTTCACACATTCTGTATTTATTTCATCGATAATCTGTAATTTAAATACTCTAGTAATACAATTGAAATACTCTTCAATCGATGCCGTTTCATTAAAAGCTCTGTTGTTCATTTCATCTAACTTCTCTTGAAATTGACTCTTTTCATTAGTTATTAGTCGATCGTAATTCATCAATGATTTTTTAATTCCATAGATACTTTCTGACAGGTAAAATTGTTTCAGATCTATGCCATGANCATTAGATAAAATGAAAA ] [+] EMBL CD153430 [ATGCTTCAAATAAAGACCTTCTACAATGAGCTTAAGGTATAACATTTAAACAACTACATTGTTGACAAGTGACAACTATCACTCTATTGAGATACTAGATCTCAACTATGACAAATAAATAATTAGACAGAATATTTTAAAATCTTTAATCTTACGATTAACATTCTCTGCATCGTTCTTAAAACACTTCTTTATCTCAGATGATTTTGAACTGTCCATATAATGTTTTGCTATTAATAGTCATGTGAATTGTTCTGTTTATACAACCACTTACCATATTTATCTTCAACGTTTCCCATTATCTTCACACATTCTGTATTTATTTCATCGATAATCTGTAATTTAAATACTCTAGTACTACAATTGAAATACTCTTCAATCGATGCCGTTTCATTAAAAGCTCTGTTGTTCATTTCATCTAACTTCTCTTGAAATTGACTC ] [-] EMBL CD153208 [ gTTCAAATAAAGACCTTCTACAATGAGCTTAAGATATAACATTTAANCAACTACATTGTTGACAAGTGACAACTATCACTCTATTGAGATACTAGATCTCAACTATGACAAATAAATAATTAGACAGAATATTTTAAAATCTTTAATCTTACGATTAACATTCTCTGCATCGTTCTTAAAACACTTCCTTATCTCAGATGATTTTGAACTGTCCATATAATGTTTTGCTATTAATAGTCATGTGAATTGTTCTGTTTATACAACCACTTACCATATTTATCTTCAACGTTTCCCATTATCTTCACACATTCTGTATTTATTTCATCGATAATCTGTAATTTAAATACTCTAGTAATACAATTGAAATACTCTTCAATCGATGCCGTTTCATTAAAAGCTCTGTTGTTCATTTCATCTAACTTCTCTTGAAATTGACTCTTTTCATTAGTTATTAGTCGATCGTAATTCATCAATGATTTTTTAATTCCATAGATACTTTTTGACAGGTAAAATTGTTTCAGATCTATGCCATGACAATTAGAT AAATGAAAAAGTAGATGGAACAAATTGACAAGAAGTGAACAAGATAGATTCATTTTTCTTT] [-] EMBL CD151638 [ tTTGTTGACAAGTGACAACTATCACTCTATTGAGATACTAGATCTCAACTATGACAAATAAATAATTAGACAGAATATTTTAAAATCTTTAATCTTACGATTAACATTCTCTGCATCGTTCTTAAAACACTTCTTTATCTCAGATGATTTTGAACTGTCCATATAATGTTTTGCTATTAATAGTCATGTGAATTGTTCTGTTTATACAACCACTTACCATATTTATCTTCAACGTTTCCCTTTATCTTCACACATTCTGTATTTATTTCATCGATAATCTGTAATTTAAATACTCTAGTAATACAATTGAAATACTCTTCAATCGATGCCGTTTCATTAAAAGCTCTGTTGTTCATTTCATCTAACTTCTCTTGAAATTGACTCTTTTCATTAGTTATTAGTCGATCGTAATTCATCAATGATTTTTTAATTCCATAGATACTTTTTGACAGGTAAAATTGTTTCAGATCTATGCCATGACAATTAGAT AAATGAAAAAGTAGATGGAACAAATTGACAAGAAGTGAACAAGATAGATTCATTTTTCTT ] consensusID : consensus_9320#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 369 fasta sequence [TTCGACAATTTTCCGTACCTTTTTCTATCAGCTCTCCATATTTATCTTCAACGTTTCCCATTATCTTCACACATTCTGTATTTATTTCATCGATAATCTGTAATTTAAATACTCTAGTAATACAATTGAAATACTCTTCAATCGATGCCGTTTCATTAAAAGCTCTGTTGTTCATTTCATCTAACTTCTCTTGAAATTGACTCTTTTCATTAGTTATTAGTCGATCGTAATTCATCAATGATTTTTTAATTCCATAGATACTTTTTGACAGGTAAAATTGTTTCAGATCTATGCCATGACAATTAGATAAATGAAAAAGTAGATGGAACAAATTGACAAGAAGTGAACAAGATAGATTCATTTTTCTTT] [+] EMBL CD161272 [TTCGACAATTTTCCGTACCTTTTTCTATCAGCTCTCCATATTTATCTTCAACGTTTCCCATTATCTTCACACATTCTGTATTTATTTCATCGATAATCTGTAATTTAAATACTCTAGTAATACAATTGAAATACTCTTCAATCGATGCCGTTTCATTAAAAGCTCTGTTGTTCATTTCATCTAACTTCTCTTGAAATTGACTCTTTTCATTAGTTATTAGTCGATCGTAATTCATCAATGATTTTTTAATTCCATAGATACTTTTTGACAGGTAAAATTGTTTCAGATCTATGCCATGACAATTAGATAAATGAAAAAGTAGATGGAACAAATTGACAAGAAGTGAACAAGATAGATTCATTTTTCTT ] [+] EMBL CD111202 [ ATTTTCTGTACCTTTTTCTATCAGCTCTCCATATTTATCTTCAACGTTTCCCATTATCTTCACACATTCTGTATTTATTTCATCGATAATCTGTAATTTAAATACTCTAGTAATACAATTGAAATACTCTTCAATCGATGCCGTTTCATTAAAAGCTCTGTTGTTCATTTCATCTAACTTCTCTTGAAATTGACTCTTTTCATTAGTTATTAGTCGATCGTAATTCATCAATGATTTTTTAATTCCATAGATACTTTTTGACAGGTAAAATTGTTTCAGATCTATGCCATGACAATTAGATNAATGAAAAAGTAGATGGAACAAATTGACAAGAAGTGAACAAGATAGATTCATTTTTCT ] [-] EMBL CD111176 [ TTTTCTGTACCTTTTTCTATCAGCTCTCCATATTTATCTTCAACGTTTCCCATTATCTTCACACATTCTGTATTTATTTCATCGATAATCTGTAATTTAAATACTCTAGTAATACAATTGAAATACTCTTCAATCGATGCCGTTTCATTAAAAGCTCTGTTGTTCATTTCATCTAACTTCTCTTGAAATTGACTCTTTTCATTAGTTATTAGTCGATCGTAATTCATCAATGATTTTTTAATTCCATAGATACTTTTTGACAGGTAAAATTGTTTCAGATCTATGCCATGACAATTAGATAAATGAGAAAGTAGATGGAACAAATTGACAAGAAGTGAACAAGATAGATTCATTTTTCTTT] [+] EMBL CD116992 [ TTTTCCGTACCTTTTTCTATCAGCTCTCCATATTTATCTTCAACGTTTCCCATTATCTTCACACATTCTGTATTTATTTCATCGATAATCTGTAATTTAAATACTCTAGTAATACAATTGAAATACTCTTCAATCGATGCCGTTTCATTAAAAGCTCTGTTGTTCATTTCATCTAACTTCTCTTGAAATTGACTCTTTTCATTAGTTATTAGTCGATCGTAATTCATCAATGATTTTTTAATTCCATAGATACTTTTTGACAGGTAAAATTGTTTCAGATCTATGCCATGACAATTAGATAAATGAAAAAGTAGATGGAACAAATTGACAAGAAGTGAACAAGATAGATTCATTTTTTTT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9320#0 ATGTTTCAAATAAAGACCTTCTACAATGAGCTTAAGATATAACATTTAAACAACTACATT 60 consensus_9320#1 ------------------------------------------------------------ consensus_9320#0 GTTGACAAGTGACAACTATCACTCTATTGAGATACTAGATCTCAACTATGACAAATAAAT 120 consensus_9320#1 ------------------------------------------------------------ consensus_9320#0 AATTAGACAGAATATTTTAAAATCTTTAATCTTACGATTAACATTCTCTGCATCGTTCTT 180 consensus_9320#1 ------------------------------------------------------------ consensus_9320#0 AAAACACTTCTTTATCTCAGATGATTTTGAACTGTCCATATAATGTTTTGCTATTAATAG 240 consensus_9320#1 ----------------------------------------------------TTCGACAA 8 * * * consensus_9320#0 TCATGTGAATTGTTCTGTTTATACAACCACTTACCATATTTATCTTCAACGTTTCCCATT 300 consensus_9320#1 TTTTCCGTACCTTTTTCT------ATCAGCTCTCCATATTTATCTTCAACGTTTCCCATT 62 * * * * ** * * * * ** *************************** consensus_9320#0 ATCTTCACACATTCTGTATTTATTTCATCGATAATCTGTAATTTAAATACTCTAGTAATA 360 consensus_9320#1 ATCTTCACACATTCTGTATTTATTTCATCGATAATCTGTAATTTAAATACTCTAGTAATA 122 ************************************************************ consensus_9320#0 CAATTGAAATACTCTTCAATCGATGCCGTTTCATTAAAAGCTCTGTTGTTCATTTCATCT 420 consensus_9320#1 CAATTGAAATACTCTTCAATCGATGCCGTTTCATTAAAAGCTCTGTTGTTCATTTCATCT 182 ************************************************************ consensus_9320#0 AACTTCTCTTGAAATTGACTCTTTTCATTAGTTATTAGTCGATCGTAATTCATCAATGAT 480 consensus_9320#1 AACTTCTCTTGAAATTGACTCTTTTCATTAGTTATTAGTCGATCGTAATTCATCAATGAT 242 ************************************************************ consensus_9320#0 TTTTTAATTCCATAGATACTTTTTGACAGGTAAAATTGTTTCAGATCTATGCCATGACCA 540 consensus_9320#1 TTTTTAATTCCATAGATACTTTTTGACAGGTAAAATTGTTTCAGATCTATGCCATGACAA 302 ********************************************************** * consensus_9320#0 TTAGATAAATGAAAAAGTAGATGGAACAAATTGACAAGAAGTGAACAAGATAGATTCATT 600 consensus_9320#1 TTAGATAAATGAAAAAGTAGATGGAACAAATTGACAAGAAGTGAACAAGATAGATTCATT 362 ************************************************************ consensus_9320#0 TTTCTTT 607 consensus_9320#1 TTTCTTT 369 ******* |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||