These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9322#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1015 fasta sequence [TGCCAGCGACGATTCCTGAAAGAAAACAAGTAAGAAATGCAATAACTCAAATTGGAGTATCAAAAGTCGATGCAGGCACACAAGATGACTATCATGGATACAGTCCTAAGCGTTCGGTTAAAGAAGTATTATGTCAAATAGGTCAAATTACAGCAAATGCTTCATGTCAGACATTAGAACATTACAAACTACAACAAACACTTAAAAAACCCACTTTAGATGCTGTAGTTCAATCTGGTGTTATCACTAAGAATAATTCCACTCAGTCGGAATACATCACAGAAACCGTCGTGAAAATGGACATACCTGAATCACAAAAAGCTGCACGAAAATATAGCGTACTAGATGCCATCTGTCAAATAGGACAGGTTACACAAACAACTGGAACACAAACAGAAGTAAAGAATACTGAAAGAAATAAGAAAAATCTCGGTGTACAAGCAGAAATGAAAAAGGCATGGCAGCACACAGTAAACACAAATGAGGCCGCATGTCAAATAGGTAGGATAACAATTAACGCTAGCACAG-AG-ATGTCACCAATGATGGTCAGTAAGGAAGAAGTGATAAAACAAGATATTAAAAAAAGTGATATAATATGTCAAATAGGCAAGGTTGAAATGACAAAATCAACACAAACTAACGCAACAGAAAAGTTAAAAACTACAACAATTAAACATTCAGCAAACCAATACGAAATCCAAAAAGCTTCAACCTCTAGTCAGGTAGATGTTTTAACGGAAAAGACATATAAACGTACGCTTAAATCTGTCAACGATGTTATATGTCAAGTCGGACAGGTAAACCATGAAGTATCCACACAGTCAGTTGAATACGTCACTACTAGACCGGCACACAAGGATACTGGCATTGATCCGATTCACGTGTGGGAAAAGAAAACGGCCAACGATGTCGTGACGCAAACAGGAATTGTTCACACATCGAAAGTAACACAGGCTGAACTGATACAAGAACAACCGGTATATGTGAAAGCAATAGAAACTCAGGATGTACCGAT] [+] EMBL CD062170 [TGCCAGCGACGATTCCTGAAAGAAAACAAGTAAGAAATGCAATAACTCAAATTGGAGTATCAAAAGTCGATGCAGGCACACAAGATGACTATCATGGATACAGTCCTAAGCGTTCGGTTAAAGAAGTATTATGTCAAATAGGTCAAATTACAGCAAATGCTTCATGTCAGACATTAGAACATTACAAACTACAACAAACACTTAAAAAACCCACTTTAGATGCTGTAGTTCAATCTGGTGTTATCACTAAGAATAATTCCACTCAGTCGGAATACATCACAGAAACCGTCGTGAAAATGGACATACCTGAATCACAAAAAGCTGCACGAAAATATAGCGTACTAGATGCCATCTGTCAAATAGGACAGGTTACACAAACAACTGGAACACAAACAGAAGTAAAGAATACTGAAAGAAATAAGAAAAATCTCGGTGTACAAGCAGAAATGAAAAAGGCATGGCAGCACACAGTAAACACAAATGAGGCCGCATGTCAAATAGGTAGGATAACAATTAACGCTAGCACAG AG ATGTCACCAA ] [+] EMBL CD059546 [ CATACCTGAATCACAAAAAGCTGCACGAAAATATAGCGTACTAGATGCCATCTGTCAAATAGGACAGGTTACACAAACAACTGGAACACAAACGGAAGTAAAGAATACTGAAAGAAATAAGAAAAATCTCGGTGTACAAGCAGAAATGAAAAAGGCATGGCAGCACACAGTAAACACAAATGAGGCCGCATGTCAAATAGGTAGGATAACAATTAACGCTAGCACAG AG ATGTCACCAATGATGGTCAGTAAGGAAGAAGTGATAAAACAAGATATTAAAAAAAGTGATATAATATGTCAAGTAGGCAAGGTTGAAATGACA ] [+] EMBL CD059457 [ CATACCTGAATCACAAAAAGCTGCACGAAAATATAGCGTACTAGATGCCATCTGTCAAATAGGACAGGTTACACAAACAACTGGAACACAAACAGAAGTAAAGAATACTGAAAGAAATAAGAAAAATCTCGGTGTACAAGCAGAAATGAAAAAGGCATGGCA ] [-] EMBL CD141822 [ GGTTACACAAACAACTGGAACACAAACAGAAGTAAAGAATACTGAAAGAAATAAGAAAAATCTCGGTGTACAAGCAGAAATGAAAAAGGCATGGCAGCACACAGTAAACACAAATGAGGCCGCATGTCAAATAGGTAGGATAACAATTAACGCTAGCACAG AG ATGTCACCAATGATGGTCAGTAAGGAAGAAGTGATAAAACAAGATATTAAAAAAAGTGATATAATATGTCAAATAGGCAAGGTTGAAATGACAAAATCAACACAAACTAACGCAACAGAAAAGTTAAAAACTACAACAATTAAACATTCAGCAAACCAATACGAAATCCAAAAAGCTTCAACCTCTAGTCAGGTAGATGTTTTAACGGAAAAGACATATAAACGTACGCTTAAATCTGTCAACGATGTTA ] [-] EMBL CD064206 [ ATACTGAAAGAAATAAGAAAAATCTCGGTGTACAAGCAGAAATGAAAAAGGCATGGCAGCACACAGTAAACACAAATGA GCCGCGTGTCAAATAGGTAGGATAACAA TAA GCTAGCACAG AGNATGTC ] [-] EMBL CD184316 [ CAAATGAGGCCGCATGTCAAATAGGTAGGATAACAATTAACGCTAGCACAG AG ATGTCACCAATGATGGTCAGTAAGGAAGAAGTGATAAAACAAGATATTAAANANAGTGATATAATATGTCAAATAGGCAAGGTTGAAATGACAAAATCAACACAAACTAACGCAACAGAAAAGTTAAAAACTACAACAATTAAACATTCAGCAAACCAATACGAAATCCAAAAAGCTTCAACCTCTAGTCAGGTAGATGTTTTAACGGAAAAGACATATAGACGTACGCTTAAATCTGTCAACGATGTTATATGTCAAGTCGGACAGGTAAACCATGAAGTATCCACACAGTCAGTTGAATACGTCACTACTAGACCGGCACACAAGGATACTGGCATTGATCCGATTCACGTGTGGGAAAAGAAAACGGCCAACGATGTCGTGACGCAAACAGGAATTGTTCACACATCGAAAGTAACACAGGCTG ] [-] EMBL CD163628 [ ACAATTAACGCTAGCACAGAAG ATGTCACCAATGATGGTCAGTAAGGAAGAAGTGATAAAACAAGATATTAAAAAAAGTGATATAATATGTCAAATAGGCAAGGTTGAAATGACAAAATCAACACAAACTAACGCAACAGAAAAGTTAAAAACTACAACAATTAAACATTCAGCAAACCAATACGAAATCCAAAAAGCTTCAACCTCTAGTCAGGTAGATGTTTTAACGGAAAAGACATATAAACGTACGCTTAAATCTGTCAACGATGTTATATGTCAAGTCGGACAGGTAAACCATGAAGTATCCACATAGTCAGTTGAATACGTCACTACTAGACCGGCACACAAGGATACTGGCATTGATCC ] [+] EMBL CD065361 [ TTCAGCAAACCAATACGAAATCCAAAAAGCATCAACCTCTAGTCAGGTAGATGTTTTAACGGAAAAGACATATAAACGTACGCTTAAATCTGTCAACGATGTTATATGTCAAGTCGGACAGGTAAACCATGAAGTATCCACACAGTCAGTTGAATACGTCACTACTAGACCGGCACACAAGGATACTGGCATTGATCCGATTCGCGTGTGGGAAAAGAAAACGGCCAACGATGTCGTGACGCAAACAGGAATTGTTCACACATCGAAAGTAACACAGGCTGAACTGATACAAGAACAACCGGTATATGTGAAAGCAATAGAAACTCAGGATGTACCGAT] consensusID : consensus_9322#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 233 fasta sequence [CAAAAAGCTGCACGAAAATATAGCGTACTAGATGCCATCTGTCAAATAGGACAGGTTACACAAACAACTGGAACACATACAGAAGTAAAGAATACTGAAAGAAAACAAGTAAGAAATGCAATAACTCAAATTGGAGTATCAAAAGTCGATGCAGGCACACAAGATGACTATCATGGATACAGTCCTAAGCGTTCAGTTAAAGAAGTATTATGTCAAATAGGTCAAATTACAGC] [-] EMBL CD154391 [CAAAAAGCTGCACGAAAATATAGCGTACTAGATGCCATCTGTCAAATAGGACAGGTTACACAAACAACTGGAACACATACAGAAGTAAAGAATACTGAAAGAAAACAAGTAAGAAATGCAATAACTCAAATTGGAGTATCAAAAGTCGATGCAGGCACACAAGATGACTATCATGGATACAGTCCTAAGCGTTCAGTTAAAGAAGTATTATGTCAAATAGGTCAAATTACAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9322#0 TGCCAGCGACGATTCCTGAAAGAAAACAAGTAAGAAATGCAATAACTCAAATTGGAGTAT 60 consensus_9322#1 ------------------------------------------------------------ consensus_9322#0 CAAAAGTCGATGCAGGCACACAAGATGACTATCATGGATACAGTCCTAAGCGTTCGGTTA 120 consensus_9322#1 ------------------------------------------------------------ consensus_9322#0 AAGAAGTATTATGTCAAATAGGTCAAATTACAGCAAATGCTTCATGTCAGACATTAGAAC 180 consensus_9322#1 ------------------------------------------------------------ consensus_9322#0 ATTACAAACTACAACAAACACTTAAAAAACCCACTTTAGATGCTGTAGTTCAATCTGGTG 240 consensus_9322#1 ------------------------------------------------------------ consensus_9322#0 TTATCACTAAGAATAATTCCACTCAGTCGGAATACATCACAGAAACCGTCGTGAAAATGG 300 consensus_9322#1 ------------------------------------------------------------ consensus_9322#0 ACATACCTGAATCACAAAAAGCTGCACGAAAATATAGCGTACTAGATGCCATCTGTCAAA 360 consensus_9322#1 --------------CAAAAAGCTGCACGAAAATATAGCGTACTAGATGCCATCTGTCAAA 46 ********************************************** consensus_9322#0 TAGGACAGGTTACACAAACAACTGGAACACAAACAGAAGTAAAGAATACTGAAAGAAA-T 419 consensus_9322#1 TAGGACAGGTTACACAAACAACTGGAACACATACAGAAGTAAAGAATACTGAAAGAAAAC 106 ******************************* ************************** consensus_9322#0 AAG--AAAAATCTCGGTGTACAAGCAGAAATGAAAAAGGC--ATGGCAGCACACAGTAAA 475 consensus_9322#1 AAGTAAGAAATGCAATAACTCAAATTGGAGTATCAAAAGTCGATGCAGGCACACAAGATG 166 *** * **** *** * * * *** * *** ******* * consensus_9322#0 CACAAATGAGGCCGCATGTCAAATAGGTAGGATAACAATTAACGCTAGCACAGAGATGTC 535 consensus_9322#1 -ACTATCATGGATACAGTCCTAAGCGTTCAGTTAAAGA--AGTATTATGTCAAATAGGTC 223 ** * ** ** * ** * * * *** * * ** ** * * *** consensus_9322#0 ACCAATGATGGTCAGTAAGGAAGAAGTGATAAAACAAGATATTAAAAAAAGTGATATAAT 595 consensus_9322#1 A--AATTACAGC------------------------------------------------ 233 * *** * * consensus_9322#0 ATGTCAAATAGGCAAGGTTGAAATGACAAAATCAACACAAACTAACGCAACAGAAAAGTT 655 consensus_9322#1 ------------------------------------------------------------ consensus_9322#0 AAAAACTACAACAATTAAACATTCAGCAAACCAATACGAAATCCAAAAAGCTTCAACCTC 715 consensus_9322#1 ------------------------------------------------------------ consensus_9322#0 TAGTCAGGTAGATGTTTTAACGGAAAAGACATATAAACGTACGCTTAAATCTGTCAACGA 775 consensus_9322#1 ------------------------------------------------------------ consensus_9322#0 TGTTATATGTCAAGTCGGACAGGTAAACCATGAAGTATCCACACAGTCAGTTGAATACGT 835 consensus_9322#1 ------------------------------------------------------------ consensus_9322#0 CACTACTAGACCGGCACACAAGGATACTGGCATTGATCCGATTCACGTGTGGGAAAAGAA 895 consensus_9322#1 ------------------------------------------------------------ consensus_9322#0 AACGGCCAACGATGTCGTGACGCAAACAGGAATTGTTCACACATCGAAAGTAACACAGGC 955 consensus_9322#1 ------------------------------------------------------------ consensus_9322#0 TGAACTGATACAAGAACAACCGGTATATGTGAAAGCAATAGAAACTCAGGATGTACCGAT 1015 consensus_9322#1 ------------------------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||