These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9324#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 952 fasta sequence [GGCCATAATTCGGCACGCAGGGTCTACTTACTTNTGGTCTGTACTTTGGAGTTGTCTTGGATGATATATTTAGTGGAGATATGTTAGTCGTACTTGATGTTCAATACTGGAAAGATCGTATATTTAACTGGATAAGTTTGAGAAATTTTGTAATAGCTCCTTTGGCTGAAGAACTTATCTTCCGTGCGTGTGTTACATTTCATCTACTTCCTTTGTTCTCATCGTGTGTTATGCTTTGTTTCGTTAGTTCATTATTTTTCTCTCTAGCCCATTTTCATCATGTTTTTGAATCCGTGAAAAGTGGTCAAGATCTGCAGTCTGCATTTAAAACTTCACTTTTCCAAGTGTTTTACACAACATTATTTGGAATGTATTCTGGATTTCTGATGCTAAGAACTGGTAATATTGCTTCAAGTATTGTTACGCACTCCTTGTGTAACTTCTTCGGCTTACCAGATTTAATCGGTGCCATCGAAAGAGCCAAGTATCGTTGGGGTATCTCTGGTCAAATTTTCGCTATTGGATCTCATCTTTTGGGGTTACTTTTATGGGCATACTTGCTGTATGGAATAACTGAAACAAAATGGTCCTCACCAAACAACTGTCATTGTAATTGGTATTGAGAATTTCCATATCCATATGAATTATTACTTATAGTATTAATAGGACTGTTAAACTTTTTAACTCTTCTTTTCAATTCGGCTGAAAACTCTTATCTTATATATAAATATTAAATATTTATATAATCCCGGTAAACATAGCAAATTACAGTTCATCGAAGGTACAAATGTAATAGGAATTAAAACAGATTTTTAAAAAATTTCAAGGCCTCACCTCATATTCGCAATTGTATTTAAATTTTGTGCTGCTAAGTATTTACTTGTACGTCATTAGTTTATTTGTTGTTTTAGATTGTAAATGTGTACCATTCTAAGA-TTGTTATAATTATAAA] [+] EMBL CD081185 [GGCCATAATTCGGCACGCAGGGTCTACTTACTTNTGGTCTGTACTTTGGAGTTGTCTTGGATGATATATTTAGTGGAGATATGTTAGTCGTACTTGATGTTCAATACTGGAAAGATCGTATATTTAACTGGATAAGTTTGAGAAATTTTGTAATAGCTCCTTTGGCTGAAGAACTTATCTTCCGTGCGTGTGTTACATTTCATCTACTTCCTTTGTTCTCATCGTGTGTTATGCTTTGTTTCGTTAGTTCATTATTTTTCTCTCTAGCCCATTTTCATCATGTTTTTGAATCCGTGAAAAGTGGTCAAGATCTGCAGTCTGCATTTAAAACTTCACTTTTCCAAGTGTTTTACACAACATTATTTGGAATGTATTCTGGATTTCTGATGCTAAGAACTGGTAATATTGCTTCAAGTATTGTTACGCACTCCTTGTGTAACTTCTTCGGCTTACCAGATTTAATCGGTGCCATCGAAAGAGCCAAGTATCGTTGGGGTATCTCTGGTCAAATTTTCGCTATTGGATCTCATCTTTTGGGGTTACTTTTATGGGCATACTTGCTGTATGGAATAACTGAAACAAAATGGTCCTCACCAAACAACTGTCATTGTAATTGGTATTGAGAATTTCCATATCCATATGAATTATTACTTATAGTATTAATAGGACTGTTAAACTTTTTAACTCTTCTTTTCAATTCGGCTGAAAACTCTTATCTTATATATAAATATTAAATATTTATATAATCCCGGTAAACATAGCANATTACAGTTCATCGAAGGTACAAATGTAATAGGAATTAAAACAGATTTTT AAAAATTTC AGGCCTCACCTCATATTCGCAATTGTATTTAAATTTTGTGCTGCTAAGTATTTACTTGTACGTCATTAGTTTATTTGGTGGTNTAGA TGTAANTGTGTACCATTCTAAGA TTGTTATAATTATA ] [-] EMBL CD074973 [ CATCTACTTCCTTTGTTCTCATCGTGTGTTATGCTTTGTTTCGTTAGTTCATTATTTTTCTCTCTAGCCCATTTTCATCATGTTTTTGAATCCGTGAAAAGTGGTCAAGATCTGCAGTCTGCATTTAAAACTTCACTTTTCCAAGTGTTTTACACAACATTATTTGGAATGTATTCTGGATTTCTGATGCTAAGAACTGGTAATATTGCTTCAAGTATTGTTACGCACTCCTTGTGTAACTTCTTCGGCTTACCAGATTTAATCGGTGCCATCGAAAGAGCCAAGTATCGTTGGGGTATCTCTGGTCAAATTTTCGCTATTGGATCTCATCTTTTGGGGTTACTTTTATGGGCATACTTGCTGTATGGAATAACTGAAACAAAATGGTCCTCACCAAACAACTGTCATTGTAATTGGTATTGAGAATTTCCATATCCATATGAATTATTACTTATAGTATTAATAGGACTGTTAAACTTTTTAACTCTTCTTTTCAATTCGGCTGAAAACTCTTATCTTATATATAAATATTAAATATTTATATAATCCCGGTAAACATAGCAAATTACAGTTCATCGAAGGTACAAATGTAATAGGAATTAAAACAGATTTTTAAAAAATTTCAAGGCCTCACCTCATATTCGCAATTGTATTTAAATTTTGTGCTGCTAAGTATTTACTTGTACGTCATTAGTTTGAATGTTGTTTTAGATTGTAAATGTGTACCTTTCTAAGA TTGAAGTAATTATA ] [-] EMBL CD075011 [ CTACTTCCTTTGTTCTCATCGTGTGTTATGCTTGTTTTCGTTAGTTCATTATTTTTCTCTCTAGCCCATTTTCATCATGTTTTTGAATCCGTGAAAAGTGGTCAAGATCTGCAGTCTGCATTTAAAACTTCACTTTTCCAAGTGTTTTACACAACATTATTTGGAATGTATTCTGGATTTCTGATGCTAAGAACTGGTAATATTGCTTCAAGTATTGTTACGCACTCCTTGTGTAACTTCTTCGGCTTACCAGATTTAATCGGTGCCATCGAAAGAGCCAAGTATCGTTGGGGTATCTCTGGTCAAATTTTCGCTATTGGATCTCATCTTTTGGGGTTACTTTTATGGGCATACTTGCTGTATGGAATAACTGAAACAAAATGGTCCTCACCAAACAACTGTCATTGTAATTGGTATTGAGAATTTCCATATCCATATGAATTATTACTTATAGTATTAATAGGACTGTTAAACTTTTTAACTCTTCTTTTCAATTCGGCTGAAAACTCTTATCTTATATATAAATATTAAATATTTATATAATCCCGGTAAACATAGCAAATTACAGTTCATCGAAGGTACAAATGTAATAGGAATTAAAACAGATTTTTAAAAAATTTCAAGGCCTCACCTCATATTCGCAATTGTATTTAAATTTTGTGCTGCTAAGTATTTACTTGTACGTCATTAGTTTATTTGTTGTTTTAGATTGTAAATGTGTACCATTCTAAGA TTGGAATAATTATAA ] [-] EMBL CD075823 [ TAATATTGCTTCAAGTATTGTTACGCACTCCTTGTGTAACTTCTTCGGCTTACCAGATTTAATCGGTGCCATCGAAAGAGCCAAGTATCGTTGGGGTATCTCTGGTCAAATTTTCGCTATTGGATCTCATCTTTTGGGGTTACTTTTATGGGCATACTTGCTGTATGGAATAACTGAAACAAAATGGTCCTCACCAAACAACTGTCATTGTAATTGGTATTGAGAATTTCCATATCCATATGAATTATTACTTATAGTATTAATAGGACTGTTAAACTTTTTAACTCTTCTTTTCTATTCGGCTGAAAACTCTTATCTTATATATAAATATTAAATATTTATATAATCCCGGTAAACATAGCAAATTACAGTTCATCGAAGGTACAAATGTAATAGGAATTAAAACAGATTTTTAAAAAATTTCAAGGCCTCACCTCATATTCGCAATTGTATTTAAATTTTGTGCTGCTAAGTATTTACTTGTACGTCATTAGTTTATTTGTTGTTTTAGATTGTAAATGTGTACCATTTTAAGATTTGTTATAATTATAAA] [-] EMBL AI977040 [ ACTTTAATGGGCATACTTGCTATATGGAATAACTGAAACAAAATGGTCCTCACCAAACAACTGTCATTGTAATTGGTATTGAGAATTTCCATATCCATATGAATTATTACTTATAGTATTAATAGGGCTGTTAAACTTTTTAACTCTTCTTTTCAATTCGGCTGAAAACTCTTATCTTATATATAAATATTAAATATTTATATAATCCCGGTAAACATAGCAAATTACAGTTCATCGAAGGTACAAATGTAATAGGAATTAAAACAGATTTTTAAAAAATTTCAAGGCCTCACCTCATATTCGCAATTGTATTTAAATTTTGTGCTGCTAAGTATTTACTTGTACGTCATTAGTTTATTTGTTGTTTTAGATTGTAAATGTGTACCATTCTAAGATTTGTTATAATTATAAA] consensusID : consensus_9324#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 705 fasta sequence [CAGAAACAATCNNNANAAGAGTTGTCT-CG-GTTTGTGACAGGGGCAATTTCCATGACTCATGTACTGACGTACATACGTTTCTATGATCATCCTCCGTTTCAGTTATCCTCATATGAATTTGGAAAACTATTTATTAGGCTGGACGGCTTGTTAGAAGCAGTTATTATATCTGTCATACTTACTTTGGTCATGTACTTTGGGGTTGTCTTGGATGATATATTTAGTGGAGATATGTTAGTCGTACTTGATGTTCAATACTGGAAAGATCGTATATTTAACTGGATAAGTTTGAGAAATTTTGTAATAGCTCCTTTGGCTGAAGAACTTATCTTCCGTGCGTGTGTTACATTTCATCTACTTCCTTTGTTCTCATCGTGTGTTATGCTTTGTTTCGTTAGTTCATTATTTTTCTCTCTAGCCCATTTTCATCATGTTTTTGAATCCGTGAAAAGTGGTCAAGATCTGCAGTCTGCATTTAAAACTTCACTTTTCCAAGTGTTTTACACAACATTATTTGGAATGTATTCTGGATTTCTGATGCTAAGAACTGGTAATATTGCTTCAAGTATTGTTACGCACTCCTTGTGTAACTTCTTCGGCTTACCAGATTTAATCGGTGCCATCGAAAGAGCCAAGTATCGTTGGGGTATCTCTGGTCAAATTTTCGCTATTGGATCTCATCTTTTGGGGGTACTTTTATGGGCA] [+] EMBL CD195991 [CAGAAACAATCNNNANAAGAGTTGTCTCCGTGTTTGTGACAGGGGCAATTTCCATGACTCATGTACTGACGTACATACGTTTCTATGATCATCCTCCGTTTCAGTTATCCTCATATGAATTTGGAAAACTATTTATTAGGCTGGACGGCTTGTTAGAAGCAGTTATTATATCTGTCATACTTACTTTGGTCATGTACTTTGGGGTTGTCTTGGATGATATATTTAGTGGAGATATGTTAGTCGT ] [+] EMBL CD082211 [ TCT CG GTACGAGGCAGGGGCAATTTCCATGACTCATGTACTGACGTTCATACGTTTCTATGATCATCCTCCGTTTCAGTTATCCTCATATGAATTTGGAAAACTATTTATTAGGCTGGACGGCTTGTTAGAAGCAGTTATTATATCTGTCATACTTACTTTGGTCATGTACTTTGGAGTTGTCTTGGATGATATATTTAGTGGAGATATGTTAGTCGTACTTGATGTTCAATACTGGAAAGATCGTATATTTAACTGGATAAGTTTGAGAAATTTTGTAATAGCTCCTTTGGCTGAAGAACTTATCTTCCGTGCGTGTGTTACATTTCATCTACTTCCTTTGTTCTCATCGTGTGTTATGCTTTGTTTCGTTAGTTCATTATTTTTCTCTCTAGCCCATTTTCATCATGTTTTTGAATCCGTGAAAAGTGGTCAAGATCTGCAGTCTGCATTTAAAACTTCACTTTTCCAAGTGTTTTACACAACATTATTTGGAATGTATTCTGGATTTCTGATGCTAAGAACTGGTAATATTGCTTCAAGTATTGTTACGCACTCCTTGTGTAACTTCTTCGGCTTACCAGATTTAATCGGTGCCATCGAAAGAGCCAAGTATCGTTGGGGTATCTCTGGTCAAATTTTCGCTATTGGATCTCATCTTTTGGGGGTACTTTTATGGGCA] [-] EMBL CD195680 [ TGTCTTGGATGATATATTTAGTGGAGATATGTTAGTCATACTTGATGTTCAATACTGGAAAGATCGTATATTTAACTGGATAAGTTTGAGAAATTTTGTAATAGCTCCTTTGGCTGAAGAACTTATCTTCCGTGCGTGTGTTACATTTCATCTACTTCCTTTGTTCTCATCGTGTGTTATGCTTTGTTTCGTTAGTTCATTATTTTTCTCTCTAGCCCATTTTCATCATGTTTTTGAATCCGTGAAAAGTGGTCAAGATCTGCAGTCTGCATTTAAAACTTCACTTTTCCAAGTGTTTTACA ] consensusID : consensus_9324#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 536 fasta sequence [GGCCAGAATCGCACGAGGGCGATCTCAATAATAACTTCTTCCAGTTTCAGTTATCCTCATATGAATTTGGAAAACTATTTATTAGGCTGGACGGCTTGTTAGAAGCAGTTATTATATCTGTCATACTTACTTTGGTCATGTACTTTGGAGTTGTCTTGGATGATATATTTAGTGGAGATATGTTAGTCGTACTTGATGTTCAATACTGGAAAGATCGTATATTTAACTGGATAAGTTTGAGAAATTTTGTAATAGCTCCTTTGGCTGAAGAACTTATCTTCCGTGCGTGTGTTACATTTCATCTACTTCCTTTGTTCTCATCGTGTGTTATGCTTTGTTTCGTTAGTTCATTATTTTTCTCTCTAGCCCATTTTCATCATGTTTTTGAATCCGTGAAAAGTGGTCAAGATCTGCAGTCTGCATTTAAAACTTCACTTTTCCAAGTGTTTTACACAACATTATTTGGAATGTATTCTGGATTTCTGATGCTAAGAACTGGTAATATTGCTTCAAGTATTGTTACGCACTCCTTGTGT] [+] EMBL CD083563 [GGCCAGAATCGCACGAGGGCGATCTCAATAATAACTTCTTCCAGTTTCAGTTATCCTCATATGAATTTGGAAAACTATTTATTAGGCTGGACGGCTTGTTAGAAGCAGTTATTATATCTGTCATACTTACTTTGGTCATGTACTTTGGAGTTGTCTTGGATGATATATTTAGTGGAGATATGTTAGTCGTACTTGATGTTCAATACTGGAAAGATCGTATATTTAACTGGATAAGTTTGAGAAATTTTGTAATAGCTCCTTTGGCTGAAGAACTTATCTTCCGTGCGTGTGTTACATTTCATCTACTTCCTTTGTTCTCATCGTGTGTTATGCTTTGTTTCGTTAGTTCATTATTTTTCTCTCTAGCCCATTTTCATCATGTTTTTGAATCCGTGAAAAGTGGTCAAGATCTGCAGTCTGCATTTAAAACTTCACTTTTCCAAGTGTTTTACACAACATTATTTGGAATGTATTCTGGATTTCTGATGCTAAGAACTGGTAATATTGCTTCAAGTATTGTTACGCACTCCTTGTGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9324#1 CAGAAACAATCNNNANAAGAGTTGTCTCGGTTTGTGACAGGGGCAATTTCCATGACTCAT 60 consensus_9324#2 -----------------------------------------------GGCCA-GAATCGC 12 consensus_9324#0 ------------------------------------------------------------ consensus_9324#1 GTACTGACGTACATACGTTTCTATGATCATCCTCCGTTTCAGTTATCCTCATATGAATTT 120 consensus_9324#2 ACGAGGGCGATCTCAA----TAATAACTTCTTCCAGTTTCAGTTATCCTCATATGAATTT 68 consensus_9324#0 ------------------------------------------------------------ consensus_9324#1 GGAAAACTATTTATTAGGCTGGACGGCTTGTTAGAAGCAGTT-ATTATATCTGTCATACT 179 consensus_9324#2 GGAAAACTATTTATTAGGCTGGACGGCTTGTTAGAAGCAGTT-ATTATATCTGTCATACT 127 consensus_9324#0 --------------------------------GGCCATAATTCGGCACGCAGGGTCTACT 28 * * ** * * **** consensus_9324#1 TACTTTGGTCATGTACTTTGGGGTTGTCTTGGATGATATATTTAGTGGAGATATGTTAGT 239 consensus_9324#2 TACTTTGGTCATGTACTTTGGAGTTGTCTTGGATGATATATTTAGTGGAGATATGTTAGT 187 consensus_9324#0 TACTTNTGGTCTGTACTTTGGAGTTGTCTTGGATGATATATTTAGTGGAGATATGTTAGT 88 ***** * ********** ************************************** consensus_9324#1 CGTACTTGATGTTCAATACTGGAAAGATCGTATATTTAACTGGATAAGTTTGAGAAATTT 299 consensus_9324#2 CGTACTTGATGTTCAATACTGGAAAGATCGTATATTTAACTGGATAAGTTTGAGAAATTT 247 consensus_9324#0 CGTACTTGATGTTCAATACTGGAAAGATCGTATATTTAACTGGATAAGTTTGAGAAATTT 148 ************************************************************ consensus_9324#1 TGTAATAGCTCCTTTGGCTGAAGAACTTATCTTCCGTGCGTGTGTTACATTTCATCTACT 359 consensus_9324#2 TGTAATAGCTCCTTTGGCTGAAGAACTTATCTTCCGTGCGTGTGTTACATTTCATCTACT 307 consensus_9324#0 TGTAATAGCTCCTTTGGCTGAAGAACTTATCTTCCGTGCGTGTGTTACATTTCATCTACT 208 ************************************************************ consensus_9324#1 TCCTTTGTTCTCATCGTGTGTTATGCTTTGTTTCGTTAGTTCATTATTTTTCTCTCTAGC 419 consensus_9324#2 TCCTTTGTTCTCATCGTGTGTTATGCTTTGTTTCGTTAGTTCATTATTTTTCTCTCTAGC 367 consensus_9324#0 TCCTTTGTTCTCATCGTGTGTTATGCTTTGTTTCGTTAGTTCATTATTTTTCTCTCTAGC 268 ************************************************************ consensus_9324#1 CCATTTTCATCATGTTTTTGAATCCGTGAAAAGTGGTCAAGATCTGCAGTCTGCATTTAA 479 consensus_9324#2 CCATTTTCATCATGTTTTTGAATCCGTGAAAAGTGGTCAAGATCTGCAGTCTGCATTTAA 427 consensus_9324#0 CCATTTTCATCATGTTTTTGAATCCGTGAAAAGTGGTCAAGATCTGCAGTCTGCATTTAA 328 ************************************************************ consensus_9324#1 AACTTCACTTTTCCAAGTGTTTTACACAACATTATTTGGAATGTATTCTGGATTTCTGAT 539 consensus_9324#2 AACTTCACTTTTCCAAGTGTTTTACACAACATTATTTGGAATGTATTCTGGATTTCTGAT 487 consensus_9324#0 AACTTCACTTTTCCAAGTGTTTTACACAACATTATTTGGAATGTATTCTGGATTTCTGAT 388 ************************************************************ consensus_9324#1 GCTAAGAACTGGTAATATTGCTTCAAGTATTGTTACGCACTCCTTGTGTAACTTCTTCGG 599 consensus_9324#2 GCTAAGAACTGGTAATATTGCTTCAAGTATTGTTACGCACTCCTTGTGT----------- 536 consensus_9324#0 GCTAAGAACTGGTAATATTGCTTCAAGTATTGTTACGCACTCCTTGTGTAACTTCTTCGG 448 ************************************************* consensus_9324#1 CTTACCAGATTTAATCGGTGCCATCGAAAGAGCCAAGTATCGTTGGGGTATCTCTGGTCA 659 consensus_9324#2 ------------------------------------------------------------ consensus_9324#0 CTTACCAGATTTAATCGGTGCCATCGAAAGAGCCAAGTATCGTTGGGGTATCTCTGGTCA 508 consensus_9324#1 AATTTTCGCTATTGGATCTCATCTTTTGGGGGTACTTTTATGGGCA-------------- 705 consensus_9324#2 ------------------------------------------------------------ consensus_9324#0 AATTTTCGCTATTGGATCTCATCTTTTGGGGTTACTTTTATGGGCATACTTGCTGTATGG 568 consensus_9324#1 ------------------------------------------------------------ consensus_9324#2 ------------------------------------------------------------ consensus_9324#0 AATAACTGAAACAAAATGGTCCTCACCAAACAACTGTCATTGTAATTGGTATTGAGAATT 628 consensus_9324#1 ------------------------------------------------------------ consensus_9324#2 ------------------------------------------------------------ consensus_9324#0 TCCATATCCATATGAATTATTACTTATAGTATTAATAGGACTGTTAAACTTTTTAACTCT 688 consensus_9324#1 ------------------------------------------------------------ consensus_9324#2 ------------------------------------------------------------ consensus_9324#0 TCTTTTCAATTCGGCTGAAAACTCTTATCTTATATATAAATATTAAATATTTATATAATC 748 consensus_9324#1 ------------------------------------------------------------ consensus_9324#2 ------------------------------------------------------------ consensus_9324#0 CCGGTAAACATAGCAAATTACAGTTCATCGAAGGTACAAATGTAATAGGAATTAAAACAG 808 consensus_9324#1 ------------------------------------------------------------ consensus_9324#2 ------------------------------------------------------------ consensus_9324#0 ATTTTTAAAAAATTTCAAGGCCTCACCTCATATTCGCAATTGTATTTAAATTTTGTGCTG 868 consensus_9324#1 ------------------------------------------------------------ consensus_9324#2 ------------------------------------------------------------ consensus_9324#0 CTAAGTATTTACTTGTACGTCATTAGTTTATTTGTTGTTTTAGATTGTAAATGTGTACCA 928 consensus_9324#1 ------------------------ consensus_9324#2 ------------------------ consensus_9324#0 TTCTAAGATTGTTATAATTATAAA 952 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||