These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9327#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 925 fasta sequence [GTTATTATTATTGTATGCATGTGTGTGTGTGTGTGTGTGCAAGAGCACTATGCTTTGCTTATTGTGCCTATACTTAAATGTTCATTATTGACTTTTAAAGTTTTATTGTTTTCGTTACCTTTTCTATCTTCTATGACTTT-ATAAGTTTGATAT-AGTTTTATGTACTACTGATAAGTAGTAGTAGTAGTGGGAATCGGGATGATAATGATGTTATATTTTCTTATTTGAATTTCTGCGCCATACACACTTATATATGCTGTGAATTCATGAATTATTCATCATCATCATCATCCTTCTTCTTTTTCTATGGATGAATTGTGGTAAGCAAAGAAAAACGAAAGTGAAGCAATGATAATTATGTGTTTGGCGGCAACTAAAAAAATGAGAGTAGTAATGATATCAAGTAATCTACAATATGTTCACATGGATATACTAACACACACACACATTTGTGTATGTATCATATTTTGTTTCTTTTTTGGTTTGTGCATGTACGTGATGCTAAGTGTATCTGTTGTATACACATTCAATGCTTGCTTATATCAATAGGGGAGGTTGTCTCCCTTCATTGACAATAACAAGTAAGAAATTGTCTATGTGAATCAATTGATTCCTCTGAATATCGATCAAACTCAATTGGTTNTTTCATCAGCTGTCTCACTGAATATTGCCCTGATCATCATTATCAGTGAATGTGTAATGTTTAGTGAACTAACTATACATGCATACTTACTTACATACAGTTNGATGGGGCTTA-TCTATNNTGNNNGATGNATCTNCTCTTTGNNTTGGTCTATNTCTGCCAGNTGNTTTTTTCCCCTTC-TTTCACATGAAATAGAAGAAATATGGGTCACAAAGNTANNTAT-ATCATNNAT-ATACGGCTTNATGNTACTGCCTAGCAGTAAAT-AGAGAAAATAAATGTGAT] [+] EMBL CD082019 [GTTATTATTATTGTATGCATGTGTGTGTGTGTGTGTGTGCAAGAGCACTATGCTTTGCTTATTGTGCCTATACTTAAATGTTCATTATTGACTTTTAAAGTTTTATTGTTTTCGTTACCTTTTCTATCTTCTATGACTTT ATAAGTTTGATAT ATTTTTATGTACTACTGATAAGTAGTAGTAGTAGTGGGAATCGGGATGATAATGATGTTATATTTTCTTATTTGAATTTCTGCGCCATACACACTTATATATGCTGTGAATTCATGAATTATTCATCATCATCATCATCCTTCTTCTTTTTCTATGGATGAATTGTGGTAAGCAAAGAAAAACGAAAGTGAAGCAATGATAATTATGTGTTTGGCGGCAACTAAAAAAATGAGAGTAGTAATGATATCAAGTAATCTACAATATGTTCACATGGATATACTAACACACACACACATTTGTGTATGTATCATATTTTGTTTCTTTTTTGGTTTGTGCATGTACGTGATGCTAAGTGTATCTGTTGTATACACATTCAATGCTTGCTTATATCAATAGGGGAGGTTGTCTCCCTTCATTGACAATAACAAGTAAGAAATTGTCTATGTGAATCAATTGATTCCTCTGAATATCGATCAAACTCAATTGGTTNTTTCATCAGCTGTCTCACTGAATATTGCCCTGATCATCATTATCAGTGAATGTGTAATGTTTAGTGAACTAACTATACATGCATACTTACTTACATACAGTTNGATGGGGCTTA TCTATNNTGNNNGATGNATCTNCTCTTTGNNTTGGTCTATNTCTGCCAGNTGNTTTTTTCCCCTTC TTTCACATGAAATAGAAGAAATATGGGTCACAAAGNTANNTAT ATCATNNAT ATACGGCTTNATGNTACTGCCTAGCAGTAAAT AGAGAAAATAAATGTGA ] [+] EMBL CD197223 [ TTGCTTATTGTGCCTATACTTAAATGTTCATTATTGACTTCTAAAGTTTTATTGTTTTCGTTACCTTTTCTATCTTCTATGACTTT ATAAGTTTGATAT AGTTTTATGTACTACTGATAAGTAGTAGTAGTAGTGGGAATCGGGATGATAATGATGTTATATTTTCTTATTTGAATTTCTGCGCCATACACACTTATATATGCTGTGAATTCATGAATTATTCATCATCATCATCATCCTTCTTCTTTTTCTATGGATGAATTGTGGTAAGCAAAGAAAAACGAAAGTGAAGCAATGATAATTATGTGTTTGGCGGCAACTAAAAAAATGAGAGTAGTAATGATATCAAGTAATCTACAATATGTTCACATGGATATACTAACACACACACACATTTGTGTATGTATCA ] [-] EMBL CD197139 [ CTTTTAAAGTTTTATTGTTTTCGTTACCTTTTCTTTCTTCTAGGACTTTAAAAAGTTGAAAAT AGTTTTATGTACTACTGATAAGTAGTAGTAGTAGTGGGAATCGGGATGATAATGATGTTATATTTTCTTATTTGGATTTCTGCGCCATACACACTTATATATGCTGTGAATTCATGAATTATTCATCATCATCATCATCCTTCTTCTTTTTCTATGGATGAATTGTGGTAAGCAAAGAAAAACGAAAGTGAAGCAATGATAATTATGTGTTTGGCGGCAACTAAAAAAATGAGAGTAGTAATGATATCAAGTAATCTACAATATGTTCACATGGATATACTAACACACACACACATTTGTGTATGTATCAT ] [-] EMBL CD197119 [ CTTTTAAAGTTTTATTGTTTTCGTTACCTTTTCTATCTTCTAAGACTTTAATAAG TTGAAATAAGTTTAATGTACTACTGATAAGTAGTAGTAGTAGTGGGAATCGGGATGATAATGATGTTATATTTTCTTATTTGAATTTCTGCGCCATACACACTTATATATGCTGTGAATTCATGAATTATTCATCATCATCATCATCCTTCTTCTTTTTCTATGGATGAATTGTGGTAAGCAAAGAGAAACGAAAGTGAAGCAATGATAATTATGTGTTTGGCGGCAACTAAAAAAATGAGAGTAGTAATGATATCAAGTAATCTACAATATGTTCACATGGATATACTAACACACACACACATTTGTGTATGTATCAT ] [-] EMBL CD075634 [ tTTCATCATCATCATCATCCTTCTTCTTTTTCTATGGATGAATTGTGGTAAGCAAAGAAAAACGAAAGTGAAGCAATGATAATTATGTGTTTGGCGGCAACTAAAAAAATGAGAGTAGTAATGATATCAAGTAATCTACAATATGTTCACATGGATATACTAACACACACACACATTTGTGTATGTATCATATTTTGTTTCTTTTTTGGTTTGTGCATGTACGTGATGCTAAGTGTATCTGTTGTATACACATTCAATGCTTGCTTATATCAATAGGGGAGGTTGTCTCCCTTCATTGACAATAACAAGTAAGAAATTGTCTATGTGAATCAATTGATTCCTCTGAATATCGATCAAACTCAATTGGTTTTTTCATCAGCTGTCTCACTGAATATTGCCCTGATCATCATTATCAGTGAATGTGTAATGTTTAGTGAACTAACTATACATGCATACTTACTTACATACAGTTTGAT GGCTTTATTCTATTTTGTTGAATGTATCTTCTCTTTGTTTTGTTCTATTTCTGCCAGTTG TTTTTTCCCCTTCTTTTCACATGAAATAGAAGAATAATGGTTCACAAAG TAATAATAATCAT AATAATACCGCTTATTGTTACTG CTAGCAGTTAATAAGAGAAATAAAATGTGAT] [+] EMBL CD125974 [ CATCATCCTTCTTCTTTTTCTATGGATGAATTGTGGTAAGCAAAGAAAAACGAAAGTGAAGCAATGATAATTATGTGTTTGGCGGCAACTAAAAAAATGAGAGTAGTAATGATATCAAGTAACCTACAATATGTTCACATGGATATACTGACACACACACACATTTGTGTATGTATCATATTTTGTTTCTTTTTTGGTTTGTGCATGTACGTGATGCTAAGTGTATCTGTTGTA ] consensusID : consensus_9327#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 503 fasta sequence [TAATGTTTAGTGAACTAACTATACATGCATACTTACTTACATACAGTTTGATGGCTTTATTCTATTTTGTTGAATGTATCTTCTCTTTGAATGATAATTATGTGTTTGGCGGCAACTAAAAAAATGAGAGTAGTAATGAAATCAAGTAATCTACAATATGTTCACATGGATATACTAACACACACACACATTTGTGTATGTATCATATTTTGTTTCTTTTTTGGTTTGTGCATGTACGTGATGCTAAGTGTATCTGTTGTATACACATCCAATGCTTGCTTATATCAATAGGGGAGGTTGTCTCCCTTCATTGACAATAACAAGTAAGAAATTGTCTATGTGAATCAATTGATTCCTCTGAATATCGATCAAACTCAATTGGTTTTTTCATCAGCTGTCTCACTGAATATGCCCTGATCATCATTATCAGTGAATGTGTAATGTTTAGTGAACTAACTAACATGCATACTACTTACATACAGTTTGATGGCTTTATTCTATTT] [-] EMBL CD196461 [TAATGTTTAGTGAACTAACTATACATGCATACTTACTTACATACAGTTTGATGGCTTTATTCTATTTTGTTGAATGTATCTTCTCTTTGAATGATAATTATGTGTTTGGCGGCAACTAAAAAAATGAGAGTAGTAATGAAATCAAGTAATCTACAATATGTTCACATGGATATACTAACACACACACACATTTGTGTATGTATCATATTTTGTTTCTTTTTTGGTTTGTGCATGTACGTGATGCTAAGTGTATCTGTTGTATACACATCCAATGCTTGCTTATATCAATAGGGGAGGTTGTCTCCCTTCATTGACAATAACAAGTAAGAAATTGTCTATGTGAATCAATTGATTCCTCTGAATATCGATCAAACTCAATTGGTTTTTTCATCAGCTGTCTCACTGAATATGCCCTGATCATCATTATCAGTGAATGTGTAATGTTTAGTGAACTAACTAACATGCATACTACTTACATACAGTTTGATGGCTTTATTCTATTT] consensusID : consensus_9327#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 152 fasta sequence [TCTCTTTGTTTTGTTCCATTTCTGCNAGTTGTTTTTTCCCCTTCTTTTCACATGATATAGAAGATTAATGGTTCACAAAGTAATAATAATCATAATANTANCGCTTATTGTTACTGCTAGCAGTTAATAAGAGTAATANNATGTGATAATTT] [+] EMBL BE505150 [TCTCTTTGTTTTGTTCCATTTCTGCNAGTTGTTTTTTCCCCTTCTTTTCACATGATATAGAAGATTAATGGTTCACAAAGTAATAATAATCATAATANTANCGCTTATTGTTACTGCTAGCAGTTAATAAGAGTAATANNATGTGATAATTT] consensusID : consensus_9327#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 131 fasta sequence [TCACATTTNATTCCCTAATTAACTGCTAGCAGTAACAATAAGCGGTATTATTATGATTATTATNACTTTGTGAACCATTATTCTTCTATTTCATGTGAAAAGAAGGGGAAAATAACAACTGGGCAGAAATA] [+] EMBL AA999641 [TCACATTTNATTCCCTAATTAACTGCTAGCAGTAACAATAAGCGGTATTATTATGATTATTATNACTTTGTGAACCATTATTCTTCTATTTCATGTGAAAAGAAGGGGAAAATAACAACTGGGCAGAAATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9327#2 ------------------------------------------------------------ consensus_9327#0 GTTATTATTATTGTATGCATGTGTGTGTGTGTGTGTGTGCAAGAGCACTATGCTTTGCTT 60 consensus_9327#1 ------------------------------------------------------------ consensus_9327#3 ------------------------------------------------------------ consensus_9327#2 ------------------------------------------------------------ consensus_9327#0 ATTGTGCCTATACTTAAATGTTCATTATTGACTTTTAAAGTTTTATTGTTTTCGTTACCT 120 consensus_9327#1 ------------------------------------------------------------ consensus_9327#3 ------------------------------------------------------------ consensus_9327#2 ------------------------------------------------------------ consensus_9327#0 TTTCTATCTTCTATGACTTTATAAGTTTGATATAGTTTTATGTACTACTGATAAGTAGTA 180 consensus_9327#1 ------------------------------------------------------------ consensus_9327#3 ------------------------------------------------------------ consensus_9327#2 ------------------------------------------------------------ consensus_9327#0 GTAGTAGTGGGAATCGGGATGATAATGATGTTATATTTTCTTATTTGAATTTCTGCGCCA 240 consensus_9327#1 ------------------------------------------------------------ consensus_9327#3 ------------------------------------------------------------ consensus_9327#2 ----------------------------------------------------------TC 2 consensus_9327#0 TACACACTTATATATGCTGTGAATTCATGAATTATTCAT-CATCATCATCATCCTTCTTC 299 consensus_9327#1 -----------------TAATGTTTAGTGAACTAACTATACATGCATACTTACTTACATA 43 consensus_9327#3 ------------------------------------------------------------ consensus_9327#2 TCTTTGTTTTGTTCCATTTCTGCNAGTTGTTTTTTCCCCTTCTTTTCACATGATA--TAG 60 consensus_9327#0 TTTTTCTATGGATGAATTGTGGTAAGCAAAGAAAAACGAAAGTGAAGCAATGATAATTAT 359 consensus_9327#1 CAGTTTGATGGCTTTATTCTATTTTGTTGAATGTATCTTCTCTTTG--AATGATAATTAT 101 consensus_9327#3 -----------TCACATTTNATTCCCTAATTAACTGCTAGCAGT----AACAATAAGCGG 45 *** * * *** consensus_9327#2 AAGATTAATGGTTCACAAAGTAATAATAATCATAATANTANCGCTTATTGT-TACTGCTA 119 consensus_9327#0 GTGTTTGGCGGCAACTAAAAAAATGAGAGTAGTAATGATATCAAGTAATCTACAATATGT 419 consensus_9327#1 GTGTTTGGCGGCAACTAAAAAAATGAGAGTAGTAATGAAATCAAGTAATCTACAATATGT 161 consensus_9327#3 TATTATTATGATTATTATNACTTTGTGAACCATTATTCTTCTATTTCATGT-------GA 98 * * * * * * ** * * * consensus_9327#2 GCAGTTAATAAGAGTAATANNATGTGATAATTT--------------------------- 152 consensus_9327#0 TCACATGGATATACTAACACACACACACATTTGTGTATGTATCATATTTTGTTTCTTTTT 479 consensus_9327#1 TCACATGGATATACTAACACACACACACATTTGTGTATGTATCATATTTTGTTTCTTTTT 221 consensus_9327#3 AAAGAAGGGGAAAATAACAACTGGGCAGAAATA--------------------------- 131 * * * *** * * * * consensus_9327#2 ------------------------------------------------------------ consensus_9327#0 TGGTTTGTGCATGTACGTGATGCTAAGTGTATCTGTTGTATACACATTCAATGCTTGCTT 539 consensus_9327#1 TGGTTTGTGCATGTACGTGATGCTAAGTGTATCTGTTGTATACACATCCAATGCTTGCTT 281 consensus_9327#3 ------------------------------------------------------------ consensus_9327#2 ------------------------------------------------------------ consensus_9327#0 ATATCAATAGGGGAGGTTGTCTCCCTTCATTGACAATAACAAGTAAGAAATTGTCTATGT 599 consensus_9327#1 ATATCAATAGGGGAGGTTGTCTCCCTTCATTGACAATAACAAGTAAGAAATTGTCTATGT 341 consensus_9327#3 ------------------------------------------------------------ consensus_9327#2 ------------------------------------------------------------ consensus_9327#0 GAATCAATTGATTCCTCTGAATATCGATCAAACTCAATTGGTTNTTTCATCAGCTGTCTC 659 consensus_9327#1 GAATCAATTGATTCCTCTGAATATCGATCAAACTCAATTGGTTTTTTCATCAGCTGTCTC 401 consensus_9327#3 ------------------------------------------------------------ consensus_9327#2 ------------------------------------------------------------ consensus_9327#0 ACTGAATATTGCCCTGATCATCATTATCAGTGAATGTGTAATGTTTAGTGAACTAACTAT 719 consensus_9327#1 ACTGAATAT-GCCCTGATCATCATTATCAGTGAATGTGTAATGTTTAGTGAACTAACTA- 459 consensus_9327#3 ------------------------------------------------------------ consensus_9327#2 ------------------------------------------------------------ consensus_9327#0 ACATGCATACTTACTTACATACAGTTNGATGGGGCTTATCTATNNTGNNNGATGNATCTN 779 consensus_9327#1 ACATGCATACT-ACTTACATACAGTTTGATGGCTTTATTCTATTT--------------- 503 consensus_9327#3 ------------------------------------------------------------ consensus_9327#2 ------------------------------------------------------------ consensus_9327#0 CTCTTTGNNTTGGTCTATNTCTGCCAGNTGNTTTTTTCCCCTTCTTTCACATGAAATAGA 839 consensus_9327#1 ------------------------------------------------------------ consensus_9327#3 ------------------------------------------------------------ consensus_9327#2 ------------------------------------------------------------ consensus_9327#0 AGAAATATGGGTCACAAAGNTANNTATATCATNNATATACGGCTTNATGNTACTGCCTAG 899 consensus_9327#1 ------------------------------------------------------------ consensus_9327#3 ------------------------------------------------------------ consensus_9327#2 -------------------------- consensus_9327#0 CAGTAAATAGAGAAAATAAATGTGAT 925 consensus_9327#1 -------------------------- consensus_9327#3 -------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||