These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9330#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 514 fasta sequence [AGAATCGGCACGAGGCCAATATCACTGTCTTACCTTCAAACGAGGATAAAAATGTATCTGGGTGTCCATCAAGCGTTAAAAACTTAACATCCAAAAGTGAAGAGAATGATGAATTAAAAGTCTATCAGGCAGATCCCGATTGCTACAACGGAGCCATTAGAGATAGTTACACATGGAGTCAAACTATCAAGGATATTGATATTAAAATTAAGATACCAGAAAACGTGGATGCTCGCAATGTTTCTGTAAATATTGAACGCAAACATATTCATGTTTCGGTTCAAAAAGACAAGAAAGAGATTTTTTGTTTCGATGGAGATCTGTGTTGGGAGATTCACAAGAATGATGCTATCTGGACCTTCCACTCTAAAGAAAATCAAATTCAGCTGTGTCTTGACAAGATTCAGGAACGGTGGTGGGAGGCAGCTTTTGATGGAGAAGACAAACTAAACACTCGGAAAATTGATTGCTCTCGGCCTATGCACGAACTAGACGATGAGGCGCAGGCTAAAAT] [+] EMBL CD083355 [AGAATCGGCACGAGGCCAATATCACTGTCTTACCTTCAAACGAGGATAAAAATGTATCTGGGTGTCCATCAAGCGTTAAAAACTTAACATCCAAAAGTGAAGAGAATGATGAATTAAAAGTCTATCAGGCAGATCCCGATTGCTACAACGGAGCCATTAGAGATAGTTACACATGGAGTCAAACTATCAAGGATATTGATATTAAAATTAAGATACCAGAAAACGTGGATGCTCGCAATGTTTCTGTAAATATTGAACGCAAACATATTCATGTTTCGGTTCAAAAAGACAAGAAAGAGATTTTTTGTTTCGATGGAGATCTGTGTTGGGAGATTCACAAGAATGATGCTATCTGGACCTTCCACTCTAAAGAAAATCAAATTCAGCTGTGTCTTGACAAGATTCAGGAACGGTGGTGGGAGGCAGCTTTTGATGGAGAAGACAAACTAAACACTCGGAAAATTGATTGCTCTCGGCCTATGCACGAACTAGACGATGAGGCGCAGGCTAAAAT] [-] EMBL CD144882 [ TGTCTTACCTTCAAACGAGGATAAAAATGTATCTGGGTGTCCATCAAGCGTTAAAAACTTAACATCCAAAAGTGAAGAGAATGATGAATTAAAAGTCTATCAGGCAGATCCCGATTGCTACAACGGAGCCATTAGAGATAGTTACACATGGAGTCAAACTATCAAGGATATTGATATTAAAATTAAGATACCAGAAAACGTGGATGCTCGCAATGTTTCTGTAAATATTGAACGCAAACATATTCATGTTTCGGTTCAAAAAGACAAGAAAGAGATTTTTTGTTTCGATGGAGATCTGTGTTGGGAGATTCACAAGAATGATGCTATCTGGACCTTCCACTCTAAAGAAAATCAAATTCAGCTGTGTCTTGACAAGATTCAGGAACGGTGGTGGGAGGCAGCTTTTGATGGAGAAGACAAACTAAACACTCGGAAAATTGATTGC ] [-] EMBL CD072539 [ TGATGAATT AAAGTCTATCAGGCAGATCCCGATGNCTACAACGGAGCCATTAGAGATAGTTACACATGGAGTCAAACTATCAAGGATATTGATATTAAAATTAAGATACCAGAAAACGTGGATGCTCGCAATGTTTCTGTAAATATTGAACGCAAACATATTCATGTTTCGGTTCAAAAAGACAAGAAAGAGATTTTTTGTTTCGATGGAGATCTGTGTTGGGAGATTCACAAGAATGATGCTATCTGGACCTTCCACTCTAAAGAAAATCAAATTCAGCTGTGTCTTGACAAGATTCAGGAACGGTGGTGGGA ] [+] EMBL CD202667 [ GCCATTAGAGATAGTTACACATGGAGTCAAACTATCAAGGATATTGATATTAAAATTAAGATACCAGAAAACGTGGATGCTCGCGATGTTTCTGTAAATATTGAACGCAAACATATTCATGTTTCGGTTCAAAAAGACAAGAAAGAGATTTTTTGTTTCGATGGAGATCTGTGTTGGGAGATTCGCAAGAATGATGCTATCTGGACCTTCCACTCTAAAGAAAATCAAAT ] [+] EMBL CD157723 [ TATCAAGGATATCGATATTAAAATTAAGATACCAGAAAACGTGGATGCTCGCAATGTTTCTGTAAATATTGAACGCAAACATATTCATGTTTCGGTTCAAAAAGACAAGAAAGAGATTTTTTGTTTCGATGGAGATCTGTGTTGGGAGATTCACAAGAATGATGCTATCTGGACCTTCCACTCTAAAGAAAATCAAATTCAGCTGTGTCTTGACAAGATTCAGGAACGGTGGTGGGAGGCAGCTTTTGATGGAGAAGACAAACTAAA ] consensusID : consensus_9330#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 512 fasta sequence [TTAGCCCGTTACGTCTAAAATGACTAACGTAAATATTCAATACGACAACGCGCTACTGGGTATTCTCCAAAACGAAGGGAAATTAGAGAATTTTTTAGACGTGATATTCGGGTTTTTAATGCGCAGGACGGACTTTTTCTATATTATGACACCAGAACAAAAAAAAATAGGTTTCCCACCTGGTGTGAGCATCGAAATGATTCTTAAGGCTTACGAGAAATATAAGACNATATNTGAGGGTTACCAGCGTCATCGTCAGGTAGACACCAACCAATCAGTCAAAATTGTAGAATCAGTCATCAAAGAAGAACCAAAGCAGCCAAATATCACTGTCTTACCTTCAAACGAGGATAAAAATGTATCTGGGTGTCCATCAAGCGTTAAAAACTTAACATCCAAAAGTGAAGAGAATGATGAATTAAAAGTCTATCAGGCAGATCCCGATTGCTACAACGGAGCCATTAGAGATAGTTACACATGGAGTCAAACTATCAAGGATATTGATATTAAAA] [+] EMBL CD078150 [TTAGCCCGTTACGTCTAAAATGACTAACGTAAATATTCAATACGACAACGCGCTACTGGGTATTCTCCAAAACGAAGGGAAATTAGAGAATTTTTTAGACGTGATATTCGGGTTTTTAATGCGCAGGACGGACTTTTTCTATATTATGACACCAGAACAAAAAAAAATAGGTTTCCCACCTGGTGTGAGCATCGAAATGATTCTTAAGGCTTACGAGAAATATAAGACNATATNTGAGGGTTACCAGCGTCATCGTCAGGTAGACACCAACCAAT ] [-] EMBL SM1247310 [ CGAAATGATTCTTATGGCTTACGAGAAATATAAGACAATATTTGAGGGTTACCAGCGTCATCGTCAGGTAGACACCAACCAATCAGTCAAAATTGTAGAATCAGTCATCAAAGAAGAACCAAAGCAGCCAAATATCACTGTCTTACCTTCAAACGAGGATAAAAATGTATCTGGGTGTCCATCAAGCGTTAAAAACTTAACATCCAAAAGTGAAGAGAATGATGAATTAAAAGTCTATCAGGCAGATCCCGATTGCTACAACGGAGCCATTAGAGATAGTTACACATGGAGTCAAACTATCAAGGATATTGATATTAAAA] [-] EMBL CD133556 [ GTTCCCAGCGTCATCGTCAGGTAGACACCACCCAATCAGTCAAAATTGTAGAATCAGTCATCAAAGAAGAACCAAAGCAGCCAAATATCACTGTCTTACCTTCAAACGAGGATAAAAATGTATCTGGGTGTCCATCAAGCGTTAAAAACTTAACATCCAAAAGTGAAGAGAATGATGAATTAAAAGTCTATCAGGCAGATCCCGATTGCTACAACGGAGCCATTAGAGATAGATACACATGGAGTCAAACTATCAAGGATATTGATATTAAA ] consensusID : consensus_9330#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 397 fasta sequence [AATCTTTACGCGCAAACAATAAACGGTCTTAGTTTTCGTCCTTTCGACTTCATATTATTTAGCTTCATTTAGATACCAGAAAACGTGGATGCTCGCAATGTTTCTGTAAATGTTGAACGCAAACATATTCATGTTTCGGTTCAAAAAGACAAGAAAGAGATTTTTTGTTTCGATGGAGATCTGTGTTGGGAGATTCACAAGAATGATGCTATCTGGACCTTCCACTCTAAAGAAAATCAAATTCAGCTGTGTCTTGACAAGATTCAGGAACGGTGGTGGGAGGCAGCTTTTGATGGAGAAGACAAACTAAACACTCGGAAAATTGATTGCTCTCGGCCTATGCACGAACTAGACGATGAGGCGCAGGCTAGAATCCAACAGTTAATGTATGATGAAC] [+] EMBL CD188891 [AATCTTTACGCGCAAACAATAAACGGTCTTAGTTTTCGTCCTTTCGACTTCATATTATTTAGCTTCATTTAGATACCAGAAAACGTGGATGCTCGCAATGTTTCTGTAAATGTTGAACGCAAACATATTCATGTTTCGGTTCAAAAAGACAAGAAAGAGATTTTTTGTTTCGATGGAGATCTGTGTTGGGAGATTCACAAGAATGATGCTATCTGGACCTTCCACTCTAAAGAAAATCAAATTCAGCTGTGTCTTGACAAGATTCAGGAACGGTGGTGGGAGGCAGCTTTTGATGGAGAAGACAAACTAAACACTCGGAAAATTGATTGCTCTCGGCCTATGCACGAACTAGACGATGAGGCGCAGGCTAGAATCCAACAGTTAATGTATGATGAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9330#0 AGAATCGGCACGAGGCCAATATCACTGTCTTACCTTCAAACGAGGATAAAAATGTATCTG 60 consensus_9330#2 ------------------------------------------------------------ consensus_9330#1 ---------------------------TTAGCCCGTTACGTCTAAAATGACTAACGTAAA 33 consensus_9330#0 GGTGTCCATCAAGCGTTAAAAACTTAACATCCAAAAGTGAAGAGAATGATGAATTAAAAG 120 consensus_9330#2 ------------------------------------------------------------ consensus_9330#1 TATTCAATACGACAACGCGCTACTGGGTATTCTCCAAAACGAAGGGAAATTAGAGAATTT 93 consensus_9330#0 TCTATCAGGCAGATCCCGATTGCTACAACGGAGCCATTAGAGATAGTTACACATGGAGTC 180 consensus_9330#2 -----------------AATCTTTACGCGCAAACAATAAACGGTCTTAGTTTTCGTCCTT 43 consensus_9330#1 TTTAGACGTGATATTCGGGTTTTTA-ATGCGCAGGACGGACTTTTTCTATATTATGACAC 152 * ** * * consensus_9330#0 AAACTATCAAGGATATTGATATTAAAATTAAGATACCAGAAAACGTGGATGCTCGCAATG 240 consensus_9330#2 TCGACTTCATAT-TATTTAGCTTC--ATTTAGATACCAGAAAACGTGGATGCTCGCAATG 100 consensus_9330#1 CAGAACAAAAAA-AAATAGGTTTCCCACCT-GGTGTGAGCAT-CGAAATGATTCTTAAGG 209 * * * ** * * * ** * ** ** ** * consensus_9330#0 TTTCTGTAAATATTGAACGCAAACATATTCATGTTTCGGTTCAAAA--AGACAAGAAAGA 298 consensus_9330#2 TTTCTGTAAATGTTGAACGCAAACATATTCATGTTTCGGTTCAAAA--AGACAAGAAAGA 158 consensus_9330#1 CTTACGAGAAATATAAGACNATATNTGAGGGTTACCAGCGTCATCGTCAGGTAGACACCA 269 ** * ** * * * * * * * *** ** * * * consensus_9330#0 GATTTTTTGTTTCGATGG--AGATCTGTGTTGGGAGATTCACAAGAATGAT--GCTATCT 354 consensus_9330#2 GATTTTTTGTTTCGATGG--AGATCTGTGTTGGGAGATTCACAAGAATGAT--GCTATCT 214 consensus_9330#1 ACCAATCAGTCAAAATTGTAGAATCAGTCATCAAAGAAGAACCAAAGCAGCCAAATATCA 329 * ** ** * *** ** * *** ** * * **** consensus_9330#0 GGACCTTCCACTCTAAAGAAAATCAAATT-CAGCTGTGTCTTGA-CAAGATTCAGGAACG 412 consensus_9330#2 GGACCTTCCACTCTAAAGAAAATCAAATT-CAGCTGTGTCTTGA-CAAGATTCAGGAACG 272 consensus_9330#1 CTGTCTTACCTTCAAACGAGGATAAAAATGTATCTGGGTGTCCATCAAGCGTTAAAAACT 389 *** * ** ** ** ** *** * * *** ** * * **** * * *** consensus_9330#0 GTGGTGGGAGGCAGCTTTTGATGGAGAAGACAAACTAAACACTCGGAAAATTGATTGCTC 472 consensus_9330#2 GTGGTGGGAGGCAGCTTTTGATGGAGAAGACAAACTAAACACTCGGAAAATTGATTGCTC 332 consensus_9330#1 -TAACATCCAAAAG----TGAAGAGAATGATGAATTAAAAGTCTATCAGGCAGATCCCGA 444 * ** *** * * ** ** **** * *** * consensus_9330#0 TCGGC-CTATGCACGAACTAGA--CGATGAGGCGCAGGCTAAAAT--------------- 514 consensus_9330#2 TCGGC-CTATGCACGAACTAGA--CGATGAGGCGCAGGCTAGAATCCAACAGTTAATGTA 389 consensus_9330#1 TTGCTACAACGGAGCCATTAGAGATAGTTACACATGGAGTCAAACTATCAAGGATATTGA 504 * * * * * * * **** * * * * * ** consensus_9330#0 -------- consensus_9330#2 TGATGAAC 397 consensus_9330#1 TATTAAAA 512 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||