cluster # 9335

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 9335 cluster # 9335 Sequences # 9 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9335#0 length = 394 sequences # 7

consensus_9335#1 length = 240 sequences # 1
consensus_9335#2 length = 148 sequences # 1

consensusID : consensus_9335#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 394
fasta sequence

                              [GGTGTTAATGTCTAACCTCAATCAATCAACGAAATTGCGCAACCATCTTCCATTGTACTGAGGTGGATACCCGTCTCTACCTGACATGGATTAGATCCACTGGTCACGGACCCTCATTAGAACTCCGAGAATTCTCTCACGAATCTAGTCACTAGTGAACACATGTTAATTATCAGTATGGGGTTGTGGAGATAATGAGTTAATGCAGAGTTTACTATAATATGGACCTAAAGTCAGTGGGTACAAAAACTTGACTAGAATAATGACATGATGTATTGTTATTGTAAACGTGTATGCTCGTGCTTTTTAATATTGCTAAAGTTTCATCTATAGCCATATTATTCGGCGTCATCAGCAACCAGTTTCTCACATACTCCAACGACTAAACTTTTAG]

[+] EMBL CD162362             [GGTGTTAATGTCTAACCTCAATCAATCAACGAAATTGCGCAACCATCTTCCATTGTACTGAGGTGGATACCCGTCTCTACCTGACATGGATTAGATCCACTGGTCACGGACCCTCATTAGAACTCCGAGAATTCTCTCACGAATCTAGTCACTAGTGAACACATGTTAATTATCAGTATGGGGTTGTGGAGATAATGAGTTAATGCAGAGTTTACTATAATATGGACCTAAAGTCAGTGGGTACAAAAACTTGACTAGAATAATGACATGATGTATTGTTATTGTAAACGTGTATGCTCGTGCTTTTTAATATTGCTAAAGTTTCATCTATAGCCATATTATTCAGCGTCATCGGCAACCAGTTTCTCACATACTCCAACGACTAAACTTTTA ]
[+] EMBL CD123735             [GGTGTTAATGTCTAACCTCAATCAATCAACGAAATTGCGCAACCATCTTCCATTGTACTGAGGTGGATACCCGTCTCTACCTGACATGGATTAGATCCACTGGTCACGGACCCTCATTAGAACTCCGAGAATTCTCTCACGAATCTAGTCACTAGTGAACACATGTTAATTATCAGTATGGGGTTGTGGAGATAATGAGTTAATGCAGAGTTTACTATAATATGGACCTAAAGTCAGTGGGTACAAAAACTTGACTAGAATAATGACATGATGTATTGTTATTGTAAACGTGTATGCTCGTGCTTTTTAATATTGCTAAAGTTTCATCTATAGCCATATTATTCG                                                 ]
[+] EMBL CD092225             [GGTGTTAATGTCTAACCTCAATCAATCAACGAAATTGCGCAACCATCTTCCATTGTACTGAGGTGGATACCCGTCTCTACCTGACATGGATTAGATCCACTGGTCACGGACCCTCATTAGAACTCCGAGAATTCTCTCACGAATCTAGTCACTAGTGAACACATGTTAATTATCAGTATGGGGTTGTGGAGATAATGAGTTAATGCAGAGTTTACTATAATATGGACCTAAAGTCAGTGGGTACAAAAACTTGACTAGAATAATGACATGATGTATTGTTATTGTAAACGTGTATGCTCGTGCTTTTTAATATTGCTAAAGTTTCATCTATAGCCATATTATTCGGCGTCATCAGCAACCAGTTTCTCACATACTCCAACGACTAAACTTTTA ]
[+] EMBL CD092151             [GGTGTTAATGTCTAACCTCAATCAATCAACGAAATTGCGCAACCATCTTCCATCGTACTGAGGTGGATACCCGTCTCTACCTGACATGGATTAGATCCACTGGTCACGGACCCTCATTAGAACTCCGAGAATTCTCTCGCGAATCTAGTCACTAGTGAACACATGTTAATTATCAGTATGGGGTTGTGGAGATAATGAGTTAATGCAGAGTTTACTATAATATGGACCTAAAGTCAGTGGGTACAAAAACTTGACTAGAATAATGACATGATGTATTGTTATTGTAAACGTGTATGCTCGTGCTTTTTAATATTGCTAAAGTGTCATCTATAGCCATATTATTCGGCGTCATCAGCAACCAGTTTCTCACATACTCCAACGACTAAACTTTTA ]
[+] EMBL CD180254             [GGTGTTAATGTCTAACCTCAATCAATCAACGAAATTGCGCAACCATCTTCCATTGTACTGAGGTGGATACCCGTCTCTACCTGACATGGATTAGATCCACTGGTCACGGACCCTCATTAGAACTCCGAGAATTCTCTCACGAATCTAGTCACTAGTGAACACATGTTAATTATCAGTATGGGGTTGTGGAGATAATGAGTTAATGCAGAGTTTACTATAATATGGACCTAAAGTCAGTGGGTACAAAAACTTGACTAGAATAATGACATGATGTATTGTTATTGTAAACGTGTATGCTCGTGCTTTTTAATATTGCTAAAGTTTCATCTATAGCCATATTATTCa                                                 ]
[-] EMBL CD162371             [ GTGTTAATGTCTAACCTCAATCAATCAACGAAATTGCGCAACCATCTTCCATTGTACTGAGGTGGATACCCGTCTCTACCTGACATGGATTAGATCCACTGGTCACGGACCCTCATTAGAACTCCGAGAATTCTCTCACGAATCTAGTCACTAGTGAACACATGTTAATTATCAGTATGGGGTTGTGGAGATAATGAGTTAATGCAGAGTTTACTATAATATGGACCTAAAGTCAGTGGGTACAAAAACTTGACTAGAATAATGACATGATGTATTGTTATTGTAAACGTGTATGCTCGTGCTTTTTAATATTGCTAAAGTTTTATCTATAGCCATATTATTCAGCGTCATCAGCAACCAGTTTCTCACATACTCCAACGACTAAACTTTTAG]
[-] EMBL CD092234             [ GTGTTAATGTCTAACTTCAATCAATCAACGAAATTGCGCAACCATCTTCCATTGTACTGAGGTGGATACCCGTCTCTACCTGACATGGA TAGATCCACTGGTCACGGACCCTCATTAGAACTCCGAGAATTCTCTCACGAATCTAGTCACTAGTGAACACATGTTAATTATCAGTATGGGGTTGTGGAGATAATGAGTTAATGCAGAGTTTACTATAATATGGACCTAAAGTCAGTGGGTACAAAAACTTGACTAGAATAATGACATGATGTATTGTTATTGTAAACGTGTATGCTCGTGCTTTTTAATATTGCTAAAGTTTCATCTATAGCCATATTATTCGGCGTCATCAGCAACCAGTTTCTCACATACTCCAACGACTAAACTTTTAG]




>consensus_9335#0
GGTGTTAATGTCTAACCTCAATCAATCAACGAAATTGCGCAACCATCTTCCATTGTACTG
AGGTGGATACCCGTCTCTACCTGACATGGATTAGATCCACTGGTCACGGACCCTCATTAG
AACTCCGAGAATTCTCTCACGAATCTAGTCACTAGTGAACACATGTTAATTATCAGTATG
GGGTTGTGGAGATAATGAGTTAATGCAGAGTTTACTATAATATGGACCTAAAGTCAGTGG
GTACAAAAACTTGACTAGAATAATGACATGATGTATTGTTATTGTAAACGTGTATGCTCG
TGCTTTTTAATATTGCTAAAGTTTCATCTATAGCCATATTATTCGGCGTCATCAGCAACC
AGTTTCTCACATACTCCAACGACTAAACTTTTAG

consensusID : consensus_9335#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 240
fasta sequence

                              [GGTGTAGGAAGGATTCAAATGTGACCAACTTGGTCTCGTGTGTTGTTACGGGTATGAGGGCTGATATCACTTCCCGGCTGCCCACACCGTGGAAGGGTATTTCTTAAGGAACCTGAAGAGTAAGTTACATTAATGTTGGTCTTAAAGACGTGGGAGTGTGACCGCACAGCCCAACGGACAATTGCTTGAGGCCGGTCACGCACGGTCTTTTTGTGGGAAGATTCTAACGTGCTAGTTCCA]

[+] EMBL CD152700             [GGTGTAGGAAGGATTCAAATGTGACCAACTTGGTCTCGTGTGTTGTTACGGGTATGAGGGCTGATATCACTTCCCGGCTGCCCACACCGTGGAAGGGTATTTCTTAAGGAACCTGAAGAGTAAGTTACATTAATGTTGGTCTTAAAGACGTGGGAGTGTGACCGCACAGCCCAACGGACAATTGCTTGAGGCCGGTCACGCACGGTCTTTTTGTGGGAAGATTCTAACGTGCTAGTTCCA]




>consensus_9335#1
GGTGTAGGAAGGATTCAAATGTGACCAACTTGGTCTCGTGTGTTGTTACGGGTATGAGGG
CTGATATCACTTCCCGGCTGCCCACACCGTGGAAGGGTATTTCTTAAGGAACCTGAAGAG
TAAGTTACATTAATGTTGGTCTTAAAGACGTGGGAGTGTGACCGCACAGCCCAACGGACA
ATTGCTTGAGGCCGGTCACGCACGGTCTTTTTGTGGGAAGATTCTAACGTGCTAGTTCCA

consensusID : consensus_9335#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 148
fasta sequence

                              [ACCACCTGATACACCGATTTCGGGCCCAGCGGCGGACACATCAACATCGGGAACCTCCATGGAGACATCGAGTTCGGGTTTCGGAAGAGATACATCCACACCATCAGCACCTCCAAATCGAGCTTACCGGAANAAATCACCTCCCCAA]

[+] EMBL CD128772             [ACCACCTGATACACCGATTTCGGGCCCAGCGGCGGACACATCAACATCGGGAACCTCCATGGAGACATCGAGTTCGGGTTTCGGAAGAGATACATCCACACCATCAGCACCTCCAAATCGAGCTTACCGGAANAAATCACCTCCCCAA]




>consensus_9335#2
ACCACCTGATACACCGATTTCGGGCCCAGCGGCGGACACATCAACATCGGGAACCTCCAT
GGAGACATCGAGTTCGGGTTTCGGAAGAGATACATCCACACCATCAGCACCTCCAAATCG
AGCTTACCGGAANAAATCACCTCCCCAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9335#0      GGTGTTAATGTCTAACCTCAATCAATCAACGAAATTGCGCAACCATCTTCCATTGTACTG 60
consensus_9335#1      ------------------------------------------------------------
consensus_9335#2      ------------------------------------------------------------
                                                                                  

consensus_9335#0      AGGTGGATACCCGTCTCTACCTGACATGGATTAGATCCACTGGTCACGGACCCTCATTAG 120
consensus_9335#1      ------------------------------------------------------------
consensus_9335#2      -----------------------------------------------------------A 1
                                                                                  

consensus_9335#0      AACTCCGAGAATTCTCTCACGAATCTAGTCACTAGTGAACACATGTTAATTATCAGTATG 180
consensus_9335#1      ----------GGTGTAGGAAGGATTCAAATGTGACCAACTTGGTCTCGTGTGTTGTTACG 50
consensus_9335#2      CCACCTGATACACCGATTTCGGGCCCAGCGGCGGACACATCAACATCGGGAACCTCCATG 61
                                          *     *                  *           * *

consensus_9335#0      GGGTTGTGGAGATAATGAGTTAATGCAGAGTTTACTATAATATGGACCTAAAGTCAGTGG 240
consensus_9335#1      GGTATG-AGGGCTGATA--TCACTTCCCGGCTGCCCACACCGTGGA----AGGGTATTTC 103
consensus_9335#2      GAGACATCGAGTTCGGGTTTCGGAAGAGATACATCCACACCATCAG--------CACCTC 113
                      *       * * *      *              * * *   *            *    

consensus_9335#0      GTACAAAAACTTGACTAGAATAATGACATGATGTATTGTTATTGTAAACGTGTATGCTCG 300
consensus_9335#1      TTA-AGGAACCTGAAGAGTA-AGTTACATTA-ATGTTGGTCTTAAAGACGTGGGAGTGTG 160
consensus_9335#2      CAAATCGAGCTTACCGGAANAAATCACCTCCCCAA------------------------- 148
                        *    * * *         * * ** *                               

consensus_9335#0      TGCTTTTTAATATTGCTAAAGTTTCATCTATAGCCATATTATTCGGCGTCATCAGCAACC 360
consensus_9335#1      -ACCGCACAGCCCAACGGACAATTGCTTGAGGCCGGTCACGCACGGTCTTTTT-GTGGGA 218
consensus_9335#2      ------------------------------------------------------------
                                                                                  

consensus_9335#0      AGTTTCTCACATACTCCAACGACTAAACTTTTAG 394
consensus_9335#1      AGATTCTAACGTGCTAGTTCCA------------ 240
consensus_9335#2      ----------------------------------