These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9336#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1187 fasta sequence [TCGGCCGCGGGGTTTCTATCGAAAGGATTTCCCATGTGATATACTGCAGAGTATGGCGTTGGCCTGACCTCCAGAGTCACCATGAGTTAAGGCCTGTTGAAAATTGCAAATTGCCATTCAGTTCTAAGGAGACGGAAGTGTGCATTAACCCATATCATTATACTCGCGTTGATTATCCTGTCTTGCCCCCTGTATTAGTGCCTAGGCATAACGAATACCCAACAATCGAGTCTACTAAAAAGGATTCCCCAAGTGATGAAACATGTGACTCACACTGTTATTCAGGATTCCATGCTGTAAACTATCAGGAACCAAAATATTGGTGCAGTGTTGTGTATTATGAATTAAATTCACGTATTGGTGAAGCATACTTTGCCAGTATACCCAGTATCATTGTCGATGGTTTCACTAATCCAGGTCGGGATAGTGGTCGGTTTTCCGTAGGATTTTTATCAAATATTAATAGAAGCCTGGCTGTTGAAAATGCCCGCAAACAAATTGGAAAGGGTGTTCATTTGTTTACTTTTGGTGGTGATGTCTACGCAGAATGCTTATCGGATTGCAGTATTTTCATTCAATCCCGCGAGTGT-AAT-GAACGTCATCATTTTCACCCAACAACTGTGATCAAAATACCTCCAGGTGGATGCTTACGCATATTTTCCAATCGTCAATTTGCTCATATTCTTAGTTATACTATATCACGAGGTGTTGAAGCTACCTATGATCTTGTACGTATGTGTACCATACGATTAAGTTTTGTTAAAGGTTGGGGTGCTGAATACCACCGACAGGACATTACTTCTACACCATGTTGGATAGAAATCCACTTGCGTGGTCCTTTCTTATGGCTTGATCGCGTTCTTCGTCAAATGGGTCCAAGTCGAAGTCCGATCTCTTCAGTTTCCTAACTCATAAAAGCTTACTATGTCAACAGCTGTCAGTCATTTCTTGTTTTATTTTACTCTATCATACACAAACATACCCTCATCACCGTCCCGCTACACCCATATTGTGATCATTTATTTGAGTGACAAAACTTTATCAATATTTTATTCACTCTGTGATTGTGTGGTTATTCAGTTCTTATATACCACTTACTTATTGTCAAATAAGTTTACCAANTTTTTTTGTCTTTGTATACGCTTCCCTCACCTTTTTTTCTAATTTTTAAACAGAAGACAATTGTA] [+] EMBL CD081730 [TCGGCCGCGGGGTTTCTATCGAAAGGATTTCCCATGTGATATACTGCAGAGTATGGCGTTGGCCTGACCTCCAGAGTCACCATGAGTTAAGGCCTGTTGAAAATTGCAAATTGCCATTCAGTTCTAAGGAGACGGAAGTGTGCATTAACCCATATCATTATACTCGCGTTGATTATCCTGTCTTGCCCCCTGTATTAGTGCCTAGGCATAACGAATACCCAACAATCGAGTCTACTAAAAAGGATTCCCCAAGTGATGAAACATGTGACTCACACTGTTATTCAGGATTCCATGCTGTAAACTATCAGGAACCAAAATATTGGTGCAGTGTTGTGTATTATGAATTAAATTCACGTATTGGTGAAGCATACTTTGCCAGTATACCCAGTATCATTGTCGATGGTTTCACTAATCCAGGTCGGGATAGTGGTCGGTTTTCCGTAGGATTTTTATCAAATATTAATAGAAGCCTGGCTGTTGAAAATGCCCGCAAACAAATTGGAAAGGGTGTTCATTTGTTTACTTTTGGTGGTGATGTCTACGCAGAATGCTTATCGGATTGCAGTATTTTCATTCAATCCCGCGAGTGT AAT GAACGTCATCATTTTCACCCAACAACTGTGATCAAAATACCTCCAGGTGGATGCTTACGCATATTTTCCAATCGTCAATTTGCTCATATTCTTAGTTATACTATATCACGAGGTGTTGAAGCTACCTATGATCTTGTACGTATGTGTACCATACGATTAAGTTTTGTTAAAGGTTGGGGTGCTGAATACCACCGACAGGACATTACTTCTACACCATGTTGGATAGAAATCCACTTGCGTGGTCCT ] [-] EMBL CD194980 [ TTGCAGTATTTTCATTCAATCCCGCGAGTGT AAT GAACGTCATCATTTTCACCCAACAACTGTGATCAAAATACCTCCAGGTGGATGCTTACGCATATTTTCCAATCGTCAATTTGCTCATATTCTCAGTTATACTATATCACGAGGTGTTGAAGCTACCTATGATCTTGTACGTATGTGTACCATACGATTAAGTTTTGTTAAAGGTTGGGGTGCTGAATACCACCGACAGGACATTACTTCTACACCATGTTGGATAGAAATCCACTTGCGTGGTCCTTTCTTATGGCTTGATCGCGTTCTTCGTCAAATGGGTCCAAGTCGAAGTCCGATCTCTTCAGTTTCCTAACTCATAAAAGCTTACTATGTCAACAGCTGTCAGTCATTTCTTG ] [+] EMBL CD065319 [ aggATCCC CGATTGTGAATAGTAGGTCATCATTTTCACCCAACAACTGTGATCAAAATACCTCCAGGTGGATGCTTACGCATATTGTCCAATCGTCAATTTGCTCATATTCTTAGTTATACTATATCACGAGGTGTAGAAGCTACCTATGATCTTGTACGTATGTGTACCATACGATTAAGTTTTGTTAAAGGTTGGGGTGCTGAATACCACCGACAGGACATTACTTCTACACCATGTTGGATAGAAATCCACTTGCGTGGTCCTTTCTTATGGCTTGATCGCGTTCTTCGTCAAATGGGTCCAAGTCGAAGTCCGATCTCTTCAGTTTCCTAACTCATAAAAGCTTACTATGTCAACAGCTGTCAGTCATTTCTTGTTTTATTTTACTCTA ] [+] EMBL CD182943 [ ggAGTTTCCTAACTCATAAAAGCTTACTATGTCAACAGCTGTCAGTCATTTCTTGTTTTATTTTACTCTATCATACACAAACATACCCTCATCACCGTCCCGCTACACCCATATTGTGATCATTTATTTGAGTGACAAAACTTTATCAATATTTTATTCACTCTGTGATTGTGTGGTTATTCAGTTCTTATATACCACTTACTTATTGTCAAATAAGTTTACCAANTTTTTTTGTCTTTGTATACGCTTCCCTCACCTTTTT ] [-] EMBL CD201222 [ ACACAAACATACCCTCATCACCGTCCCGCTACACCCATATTGTGATCATTTATTTGAGTGACAAAACTTTATCAATATTTTATTCACTCTGTGATTGTGTGGTTATTCAGTTCTTATATACCACTTACTTATTGTCAAATAAGTTTACCAA TTTTTTTGTTTTTGTATACGCTT CCTCACCCTTTTTTCTAATTTTTAAACAGAAGACAATTGTA] consensusID : consensus_9336#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 557 fasta sequence [CTCGCGTTGATTATCCTGTCTTGCCCCCTGTATTAGTGCCTAGGCATAACGAATACCCAACAATCGAGTCTACTAAAAAGGATTCCCCAAGTGATGAAACATGTGACTCACACTGTTATTCAGGATTCCATGCTGTAAACTATCAGGAACCAAAATATTGGTGCAGTGTTGTGTATTATGAATTAAATTCACGTATTGGTGAAGCATACTTTGCCAGTATACCCAGTATCATTGTCGATGGTTTCACTAATCCAGGTCGGGATAGTGGTCGGTTTTCCGTAGGATTTTTATCAAATATTAATAGAAGCCTGGCTGTTGAAAATGCCCGCAAACAAATTGGAAAGGAATGCTTATCGGATTGCAGTATTTTCATTCAATCCCGCGAGTGTAATGAACGTCATCATTTTCACCCAACAACTGTGATCAAAATACCTCCAGGTGGATGCTTACGCATATTTTCCAATCGTCAATTTGCTCATATTCTTAGTTATACTATATCACGAAGTGTTGAAGCTACCTATGATCTTGTACGTATGTGTACCATACGATTAAGTTTT] [+] EMBL CD195273 [CTCGCGTTGATTATCCTGTCTTGCCCCCTGTATTAGTGCCTAGGCATAACGAATACCCAACAATCGAGTCTACTAAAAAGGATTCCCCAAGTGATGAAACATGTGACTCACACTGTTATTCAGGATTCCATGCTGTAAACTATCAGGAACCAAAATATTGGTGCAGTGTTGTGTATTATGAATTAAATTCACGTATTGGTGAAGCATACTTTGCCAGTATACCCAGTATCATTGTCGATGGTTTCACTAATCCAGGTCGGGATAGTGGTCGGTTTTCCGTAGGATTTTTATCAAATATTAATAGAAGCCTGGCTGTTGAAAATGCCCGCAAACAAATTGGAAAGGAATGCTTATCGGATTGCAGTATTTTCATTCAATCCCGCGAGTGTAATGAACGTCATCATTTTCACCCAACAACTGTGATCAAAATACCTCCAGGTGGATGCTTACGCATATTTTCCAATCGTCAATTTGCTCATATTCTTAGTTATACTATATCACGAAGTGTTGAAGCTACCTATGATCTTGTACGTATGTGTACCATACGATTAAGTTTT] consensusID : consensus_9336#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 464 fasta sequence [GCCTGACCTCCAGAGTCACCATGAGTTAAGGCCCGTTGAAAATTGCAAATTGCCATTCAGTTCTAAGGAGACGGAAGTGTGCATTAACCCATATCATTATACTCGCGTTGATTATCCTGTCTTGCCCCCTGTATTAGTGCCTAGGCATAACGAATACCCAACAATCGAGTCTACTAAAAAGGATTGTCGATGGTTTCACTAATCCAGGTCGGGATAGTGGTCGGTTTTCCGTAGGATTTTTATCAAATATTAATAGAAGCCTGGCTGTTGAAAATGCCCGCAAACAAATTGGAAAGGGTGTTCATTTGTTTACTTTTGGTGGTGATGTCTACGCAGAATGCTTATCGGATTGCAGTATTTTCATTCAATCCCGCGAGTGTAATGAACGTCATCATTTTCACCCAACAACTGTGATCAAAATACCTCCAGGTGGATGCTTACGCATATNTTCCAATCGTCAATTT] [+] EMBL CD195083 [GCCTGACCTCCAGAGTCACCATGAGTTAAGGCCCGTTGAAAATTGCAAATTGCCATTCAGTTCTAAGGAGACGGAAGTGTGCATTAACCCATATCATTATACTCGCGTTGATTATCCTGTCTTGCCCCCTGTATTAGTGCCTAGGCATAACGAATACCCAACAATCGAGTCTACTAAAAAGGATTGTCGATGGTTTCACTAATCCAGGTCGGGATAGTGGTCGGTTTTCCGTAGGATTTTTATCAAATATTAATAGAAGCCTGGCTGTTGAAAATGCCCGCAAACAAATTGGAAAGGGTGTTCATTTGTTTACTTTTGGTGGTGATGTCTACGCAGAATGCTTATCGGATTGCAGTATTTTCATTCAATCCCGCGAGTGTAATGAACGTCATCATTTTCACCCAACAACTGTGATCAAAATACCTCCAGGTGGATGCTTACGCATATNTTCCAATCGTCAATTT] consensusID : consensus_9336#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 444 fasta sequence [ATGAAACATGTGACTCACACTGTTATTCAGGATTCCATGCTGTAAACTATCAGGAACCAAAATATTGGTGCAGTGTTGTGTATTATGAATTAAATTCACGTATTGGTGAAGCATACTTTGCCAGTATACCCAGTATCATTGTCGATGGTTTCACTAATCCAGGTCGGGATAGTGGTCGGTCCGTCGTGGCGACATCGAATTGTGAATGACTCTGATCAGCGTTGATGCGTTCATAGTCTTCTTTAGCCTTGATCATATCACGATATTTATCTCGATATCGCTTAATTTCATCATCGATAATACGCGTTTGAGATTTTAGTTCAGTTGATAATTTTGATCTTTCACTTTTCCATCGTTTAAATTGTCTTCTTTCATCTTCAATAATCGATTTACCTTCGCTACCAGCGTGTATTTCGAAGGAACATGAAATTAGATTTTCAGCAT] [+] EMBL CD192796 [ATGAAACATGTGACTCACACTGTTATTCAGGATTCCATGCTGTAAACTATCAGGAACCAAAATATTGGTGCAGTGTTGTGTATTATGAATTAAATTCACGTATTGGTGAAGCATACTTTGCCAGTATACCCAGTATCATTGTCGATGGTTTCACTAATCCAGGTCGGGATAGTGGTCGGTCCGTCGTGGCGACATCGAATTGTGAATGACTCTGATCAGCGTTGATGCGTTCATAGTCTTCTTTAGCCTTGATCATATCACGATATTTATCTCGATATCGCTTAATTTCATCATCGATAATACGCGTTTGAGATTTTAGTTCAGTTGATAATTTTGATCTTTCACTTTTCCATCGTTTAAATTGTCTTCTTTCATCTTCAATAATCGATTTACCTTCGCTACCAGCGTGTATTTCGAAGGAACATGAAATTAGATTTTCAGCAT] [-] EMBL CD090172 [ GTGTATTATGAATTAAATTCACGTATTGGTGAAGCATACTTTGCCAGTATACCCAGTATCATTGTCGATGGTTTCACTAATCCAGGTC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9336#0 TCGGCCGCGGGGTTTCTATCGAAAGGATTTCCCATGTGATATACTGCAGAGTATGGCGTT 60 consensus_9336#2 ------------------------------------------------------------ consensus_9336#1 ------------------------------------------------------------ consensus_9336#3 ------------------------------------------------------------ consensus_9336#0 GGCCTGACCTCCAGAGTCACCATGAGTTAAGGCCTGTTGAAAATTGCAAATTGCCATTCA 120 consensus_9336#2 -GCCTGACCTCCAGAGTCACCATGAGTTAAGGCCCGTTGAAAATTGCAAATTGCCATTCA 59 consensus_9336#1 ------------------------------------------------------------ consensus_9336#3 ------------------------------------ATGAAACATGTGACTCACACTGTT 24 consensus_9336#0 GTTCTAAGGAGACGGAAGTGTGCATTAACCCATATCATTATACTCGCGTTGATTATCCTG 180 consensus_9336#2 GTTCTAAGGAGACGGAAGTGTGCATTAACCCATATCATTATACTCGCGTTGATTATCCTG 119 consensus_9336#1 ------------------------------------------CTCGCGTTGATTATCCTG 18 consensus_9336#3 ATTC--AGGATTCCATGCTGTAAACTATCAGGAACCAAAATATTGGTGCAG--TGTTGTG 80 * * * * * * ** consensus_9336#0 TCTTGCCCCCTGTATTAGTGCCTAGGCATAACGAATACCCAACAATCGAGTCTACTAAAA 240 consensus_9336#2 TCTTGCCCCCTGTATTAGTGCCTAGGCATAACGAATACCCAACAATCGAGTCTACTAAAA 179 consensus_9336#1 TCTTGCCCCCTGTATTAGTGCCTAGGCATAACGAATACCCAACAATCGAGTCTACTAAAA 78 consensus_9336#3 TATTATGAATTAAATTCACGTATTGG--TGAAGCATACTTTGCCA----GTATACCCAGT 134 * ** * *** * * ** * * * **** * * ** *** * consensus_9336#0 AGGATTCCCCAAGTGATGAAACATGTGACTCACACTGTTATTCAGGATTCCATGCTGTAA 300 consensus_9336#2 AGGATT------------------------------------------------------ 185 consensus_9336#1 AGGATTCCCCAAGTGATGAAACATGTGACTCACACTGTTATTCAGGATTCCATGCTGTAA 138 consensus_9336#3 ATCATT------------------------------------------------------ 140 * *** consensus_9336#0 ACTATCAGGAACCAAAATATTGGTGCAGTGTTGTGTATTATGAATTAAATTCACGTATTG 360 consensus_9336#2 ------------------------------------------------------------ consensus_9336#1 ACTATCAGGAACCAAAATATTGGTGCAGTGTTGTGTATTATGAATTAAATTCACGTATTG 198 consensus_9336#3 ------------------------------------------------------------ consensus_9336#0 GTGAAGCATACTTTGCCAGTATACCCAGTATCATTGTCGATGGTTTCACTAATCCAGGTC 420 consensus_9336#2 -----------------------------------GTCGATGGTTTCACTAATCCAGGTC 210 consensus_9336#1 GTGAAGCATACTTTGCCAGTATACCCAGTATCATTGTCGATGGTTTCACTAATCCAGGTC 258 consensus_9336#3 -----------------------------------GTCGATGGTTTCACTAATCCAGGTC 165 ************************* consensus_9336#0 GGGATAGTGGTCGGTTTTCCGTAG-------GATTTTTATCAAATATTAATAGAAGCCTG 473 consensus_9336#2 GGGATAGTGGTCGGTTTTCCGTAG-------GATTTTTATCAAATATTAATAGAAGCCTG 263 consensus_9336#1 GGGATAGTGGTCGGTTTTCCGTAG-------GATTTTTATCAAATATTAATAGAAGCCTG 311 consensus_9336#3 GGGATAGTGGTCGGTCCGTCGTGGCGACATCGAATTGTGAATGACTCTGATCAGCGTTGA 225 *************** *** * ** ** * * * ** * consensus_9336#0 GCTGTTGAAAATGCCCGCAAACA--AATTGGAA-AGGGTGTTCATTTGTTTACTTTTGGT 530 consensus_9336#2 GCTGTTGAAAATGCCCGCAAACA--AATTGGAA-AGGGTGTTCATTTGTTTACTTTTGGT 320 consensus_9336#1 GCTGTTGAAAATGCCCGCAAACA--AATTGGAA-AGG----------------------- 345 consensus_9336#3 TGCGTTCATAGTCTTCTTTAGCCTTGATCATATCACGATATTTATCTCGATATCGCTTAA 285 *** * * * * * * ** * * * consensus_9336#0 GGTGATGTCTACGCAGAATGCTTATCGGATTGCAGTATTTTCA-----TTCAATCCCGCG 585 consensus_9336#2 GGTGATGTCTACGCAGAATGCTTATCGGATTGCAGTATTTTCA-----TTCAATCCCGCG 375 consensus_9336#1 ----------------AATGCTTATCGGATTGCAGTATTTTCA-----TTCAATCCCGCG 384 consensus_9336#3 TTTCAT-CATCGATAATACGCGTTTGAGATTTTAGTTCAGTTGATAATTTTGATCTTTCA 344 * ** * * **** *** * ** *** * consensus_9336#0 AGTGTA-ATGAACGTCATCATTTTCACCCAACAACTGTGATCAAAATACCTCCAGGTGGA 644 consensus_9336#2 AGTGTA-ATGAACGTCATCATTTTCACCCAACAACTGTGATCAAAATACCTCCAGGTGGA 434 consensus_9336#1 AGTGTA-ATGAACGTCATCATTTTCACCCAACAACTGTGATCAAAATACCTCCAGGTGGA 443 consensus_9336#3 CTTTTCCATCGTTTAAATTGTCTTCTTTCATCTTCAATAATCGATTTACCTTC-----GC 399 * * ** ** * *** ** * * * *** * ***** * * consensus_9336#0 TGCTTACGCATATTTTCCA--ATCGTCAATTTGCTCATATTCTTAGTTATACTATATCAC 702 consensus_9336#2 TGCTTACGCATATNTTCCA--ATCGTCAATTT---------------------------- 464 consensus_9336#1 TGCTTACGCATATTTTCCA--ATCGTCAATTTGCTCATATTCTTAGTTATACTATATCAC 501 consensus_9336#3 TACCAGCGTGTATTTCGAAGGAACATGAAATTAGATTTTCAGCAT--------------- 444 * * ** *** * * * * * ** ** consensus_9336#0 GAGGTGTTGAAGCTACCTATGATCTTGTACGTATGTGTACCATACGATTAAGTTTTGTTA 762 consensus_9336#2 ------------------------------------------------------------ consensus_9336#1 GAAGTGTTGAAGCTACCTATGATCTTGTACGTATGTGTACCATACGATTAAGTTTT---- 557 consensus_9336#3 ------------------------------------------------------------ consensus_9336#0 AAGGTTGGGGTGCTGAATACCACCGACAGGACATTACTTCTACACCATGTTGGATAGAAA 822 consensus_9336#2 ------------------------------------------------------------ consensus_9336#1 ------------------------------------------------------------ consensus_9336#3 ------------------------------------------------------------ consensus_9336#0 TCCACTTGCGTGGTCCTTTCTTATGGCTTGATCGCGTTCTTCGTCAAATGGGTCCAAGTC 882 consensus_9336#2 ------------------------------------------------------------ consensus_9336#1 ------------------------------------------------------------ consensus_9336#3 ------------------------------------------------------------ consensus_9336#0 GAAGTCCGATCTCTTCAGTTTCCTAACTCATAAAAGCTTACTATGTCAACAGCTGTCAGT 942 consensus_9336#2 ------------------------------------------------------------ consensus_9336#1 ------------------------------------------------------------ consensus_9336#3 ------------------------------------------------------------ consensus_9336#0 CATTTCTTGTTTTATTTTACTCTATCATACACAAACATACCCTCATCACCGTCCCGCTAC 1002 consensus_9336#2 ------------------------------------------------------------ consensus_9336#1 ------------------------------------------------------------ consensus_9336#3 ------------------------------------------------------------ consensus_9336#0 ACCCATATTGTGATCATTTATTTGAGTGACAAAACTTTATCAATATTTTATTCACTCTGT 1062 consensus_9336#2 ------------------------------------------------------------ consensus_9336#1 ------------------------------------------------------------ consensus_9336#3 ------------------------------------------------------------ consensus_9336#0 GATTGTGTGGTTATTCAGTTCTTATATACCACTTACTTATTGTCAAATAAGTTTACCAAN 1122 consensus_9336#2 ------------------------------------------------------------ consensus_9336#1 ------------------------------------------------------------ consensus_9336#3 ------------------------------------------------------------ consensus_9336#0 TTTTTTTGTCTTTGTATACGCTTCCCTCACCTTTTTTTCTAATTTTTAAACAGAAGACAA 1182 consensus_9336#2 ------------------------------------------------------------ consensus_9336#1 ------------------------------------------------------------ consensus_9336#3 ------------------------------------------------------------ consensus_9336#0 TTGTA 1187 consensus_9336#2 ----- consensus_9336#1 ----- consensus_9336#3 ----- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||