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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9343#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1241 fasta sequence
[TTCCAGTTCTTGTGCATCTTTCTTTAAACTGTTTTTGTAACCTTTCTCAAAATCTTTTGCTAGAACAACATAACGATTTTCTCGAACTGCCTGCATTCCAGCCTCTTGGCAAATAGCATTGATGTCTGCACCAGATATCTTATCTGGTCGTGCAACGTAATCTTCCAAGTCAATATCATCACTGAGATTCATTTTGCTGGTGACAGTTGAAAAAATGAGGCGTATTTGACGACGATCTGGCATTGGGAATTCGATTTTACGATCAAGTCGACCAGGGCGCAAAAGTGCTGGGTCTAATGTATCGGCACGATTTGTAGCCATAATAACCTTGACATTTACATTTTGGTCGAATCCATCCATTTGGTTCAACAATTCTAAAAGGATACGCTGTACTTCACGGTCAGCTCCAGTTTGTGCATCAAACCTTTTAGTGGCGATAGCATCGATTTCGTCGATAAATATGATTGCTGGAGCATTTTCTTTCGCCAAACGAAACACATCCCGAACCATTCGAGGACCTTCTCCCAGATACTTCTGAACAAATTCCGATCCAACCACACGAATAAAAGCAGCAGTAGTATGATGCGCGACTGCTTTGGCCAACATTGTCTTCCCACAACCTGGAGGACCATACATTAGAACACCTCTAGGTGGGTCAATCCCAATTTGCTTGTATAATTCGAAATGAGTTAGAGGCAATTCAACAGCTTCTCTCACTTCCTGCTTCTGAATATCCATACCACCAATATCAGAGTAGGATACATCAGGTTTCTCACCAGCTTGGAGCATCGTGATACTACTGTC-TGCTTCTGGGGGAACGACATCAACCAAAGCATTGCTGTGTTTGTGG-AGAGCGACGCTGGCACTTGGCTTCAACAGCTC-GCGATCAATTGTAGATAATATTCGAACGTAGTAATTC-GAACCGGTTGTGGATCC-TACAATACCGGTGCTTTGATCAACAGCTTCTAGAAACTGTCCGATAACAAGCGGGACACTTTTGATCCGCTTGACCTCTTCTTGTGCATGTAAATACTCCTTTTTCAAATTTTTCTGTTCATCTTTGATATAGTTTTCTTGTACCTGAATGAACTCAATTTGCTTTTCAAGGATCTTCAGTTTTACATAAAGATCTTCTTCGCTTAGCTGAAGAGGATCTATATGTCCAAAGTTTATTCCCGAACTTTCAATTGTCTCAAGTTCCTTTGTAACTTGAGGTGCTAACGCAATCTCTTCCATCGCTT]
[+] EMBL CD121308 [TTCCAGTTCTTGTGCATCTTTCTTTAAACTGTTTTTGTAACCTTTCTCAAAATCTTTTGCTAGAACAACATAACGATTTTCTCGAACTGCCTGCA ]
[+] EMBL CD121302 [ TCCAGTTCTTGTTCATCTTTCTTTAAACTGTTTTTGTAACCTTTCTCAAAATCTTTTGCTAGAACAACATAACGATTTTCTCGAACTGCCTGCATTCCAGCCTCTTGGCAAATAGCATTGATGTCTGCACCAGATATCTTATCTGGTCGTGCAACGTAATCTTCCAAGTCAATATCATCACTGAGATTCATTTTGCTGGTGACAGTTGAAAAAATGAGGCGTATTTGACGACGATCTGGCATTGGGAATTCGATTTTACGATCAAGTCGACCAGGGCGCAAAAGTGCTGGGTCTAATGTATCGGCACGATTTGTAGCCATAATAACCTTGACATTTACATTTTGGTCGAATCCATCCATTTGGTTCAACAATTCTAAAAGGATACGCTGTACTTCACGGTCAGCTCCAGTTTGTGCATCAAACCTTTTAGTGGCGATAGCATCGATTTCGTCGATAAATATGATTGCTGG ]
[-] EMBL CD121367 [ TTGACATTTTGGTCGAATCCATCCATTTGGTTCAACAGTTCTAAAAGGATACGCTGTACTTCACGGTCAGCTCCAGTTTGTGCATCAAACCTTTTAGTGGCGATAGCATCGATTTCGTCGATAAATATGATTGCTGGAGCATTTTCTTTCGCCAAACGAAACACATCCCGAACCATTCGAGGACCTTCTCCCAGATACTTCTGAACAAATTCCGACCCAACCACACGAATAAAAGCAGCAGTAGTATGATGCGCGACTGCTTTGGCCAACATTGTCTTCCCACAACCTGGAGGACCATACATTAGAACACCTCTAGGTGGGTCAATCCCAATTTGCTTGTATAATTCGAAATGAGTTAGAGGCAATTCAACAGCTTCTCTCACTTCCTGCTTCTGAATATCCATACCACCAATATCAGAGTAGGATACATCAGGTTT ]
[-] EMBL CD183028 [ ATTTCGTCGATAAATATGAGTGCTGGAGCATTTTCTTTCGCCAAACGAAACACATCCCGAACCATTCGAGGGCCTTCTCCCAGATACTTCTGAACAAATTCCGATCCAACCACACGAATAAAAGCAGCAGTAGTATGATGCGCG ]
[+] EMBL AI067551 [ TTCTGAACAAATTCCGATCCAACCACACGAATAAAAGCAGCAGTAGTATGATGCGCGACTGCTTTGGCCAACATTGTCTTCCCACAACCTGGAGGACCATACATTATAACACCTCTAGGTGGATCAATCCCAATTTGCTTGTATAATTCGAAATGAGTTAGAGGCAATTCAACAGCTTCTCTCACTTCCTGCTTCTGAATATCCATACCACCAATATCAGAGTATGATACATCACGTTTCTCACCAGCTTGGAGCATCGTGATACTACTGTC TGCTTCTGGGGGAACGACATCAACCAAAGCATTGCTGTGTTTGTGG AGAGCGACGCTGGCACTTGGCTTCAACAGCTC GCGATCAATTGTAGATAATATTCGAACGTACTAATTC GAACCGGTTGTGGATCC TACAATACCGGTGCTTTGATCAACAGCTTCTAGAAACTGTCCGATAACAAGCGGGACACTTTTGATCCGCTTGACATCTTCTTGTGC ]
[-] EMBL CD163723 [ ACCATACATTAGAACACCTCTAGGTGGGTCAATCCCAATTTGCTTGTATAATTCGAAATGAGTTAGAGGCAATTCAACAGCTTCTCTCACTTCCTGCTTCTGAATATCCATACCACCAATATCAGAGTAGGATACATCAGGTTTCTCATCAGCTTGGAGCATCGTGAT CTACTGTCATGCTTCTGGGGGAAGGACATCAACCAAAGCATTGCTGTGTTTATGGAAGAGCGACGCTGGCACTTGGCTTCAACAGCTCTGCGATCAATTGTAGATAATATTCGAACGTAGTAATTCAGAACCGGTTGTGGATCCATACAATACCGGTGCTTTGATCAACAGCTTCTAGAAACTGTCCGATAACAAGCGGGACACTTTTGATCCGCTTGACCTCTTCTTGTGCATGTAAATACTCCTTTTTCAAATTTTTCTGTTCATCT ]
[-] EMBL CD195670 [ AAAGCATTGCTGTGTTTGTGG AGAGCGACGCTGGCACTTGGCTTCAACAGCTC GCGATCAATTGTAGATAATATTCGAACGTAGTAATTC GAACCGGTTGTGGATCC TACAATACCGGTGCTTTGATCAACAGCTTCTAGAAACTGTCCGATAACAAGCGGGACACTTTTGATCCGCTTGACCTCTTCTTGTGCATGTAAATACTCCTTTTTCAAATTTTTCTGTTCATCTTTGATATAGTTTTCTTGTACCTGAATGAACTCAATTTGCTTTTCAAGGATCTTCAGTTTTACATAAAGATCTTCTTCGCTTAGCTGAAGAGGATCTATATGTCCAAAGTTTATTCCCGAACTTTCAATTGTCTC ]
[-] EMBL CD159208 [ TTTTTCAAATTTTTCTGTTCATCTTTGATATAGTTTTCTTGTACCTGAATGAACTCAATTTGCTTTTCAAGGATCTTCAGTTTTACATAAAGATCTTCTTCGCTTAGCTGAAGAGGATCTATATGTCCAAAGTTTATTCCCGAACTTTCAATTGTCTCAAGTTCCTTTGTAACTTGAGGTGCTAACGCAATCTCTTCCATCGCTT]
consensusID : consensus_9343#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 277 fasta sequence
[GACATCAACCANAGCATTGCTGTGTTTGTGGAGAGCGACGCTGGCACTTGGCTTCAACAGCTCGCGATCAATTGTAGATAATATTCGAACGTAGTAATTCGAACCGGTTGTGGATCCTACAATACCGGTGCTTTGATCAACAGCTTCTAGAAACTGTCCGATAACAAGCGGGACACTTTTGATCCGCTTGACCTCTTCTTGTGCATGTAAATACTCCTTTTTCAAATTTTTCTGCTTCTGAATATCCATACCACCAATATCAGAGTAGGATACATCA]
[-] EMBL CD181333 [GACATCAACCANAGCATTGCTGTGTTTGTGGAGAGCGACGCTGGCACTTGGCTTCAACAGCTCGCGATCAATTGTAGATAATATTCGAACGTAGTAATTCGAACCGGTTGTGGATCCTACAATACCGGTGCTTTGATCAACAGCTTCTAGAAACTGTCCGATAACAAGCGGGACACTTTTGATCCGCTTGACCTCTTCTTGTGCATGTAAATACTCCTTTTTCAAATTTTTCTGCTTCTGAATATCCATACCACCAATATCAGAGTAGGATACATCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9343#0 TTCCAGTTCTTGTGCATCTTTCTTTAAACTGTTTTTGTAACCTTTCTCAAAATCTTTTGC 60
consensus_9343#1 ------------------------------------------------------------
consensus_9343#0 TAGAACAACATAACGATTTTCTCGAACTGCCTGCATTCCAGCCTCTTGGCAAATAGCATT 120
consensus_9343#1 ------------------------------------------------------------
consensus_9343#0 GATGTCTGCACCAGATATCTTATCTGGTCGTGCAACGTAATCTTCCAAGTCAATATCATC 180
consensus_9343#1 ------------------------------------------------------------
consensus_9343#0 ACTGAGATTCATTTTGCTGGTGACAGTTGAAAAAATGAGGCGTATTTGACGACGATCTGG 240
consensus_9343#1 ------------------------------------------------------------
consensus_9343#0 CATTGGGAATTCGATTTTACGATCAAGTCGACCAGGGCGCAAAAGTGCTGGGTCTAATGT 300
consensus_9343#1 ------------------------------------------------------------
consensus_9343#0 ATCGGCACGATTTGTAGCCATAATAACCTTGACATTTACATTTTGGTCGAATCCATCCAT 360
consensus_9343#1 ------------------------------------------------------------
consensus_9343#0 TTGGTTCAACAATTCTAAAAGGATACGCTGTACTTCACGGTCAGCTCCAGTTTGTGCATC 420
consensus_9343#1 ------------------------------------------------------------
consensus_9343#0 AAACCTTTTAGTGGCGATAGCATCGATTTCGTCGATAAATATGATTGCTGGAGCATTTTC 480
consensus_9343#1 ------------------------------------------------------------
consensus_9343#0 TTTCGCCAAACGAAACACATCCCGAACCATTCGAGGACCTTCTCCCAGATACTTCTGAAC 540
consensus_9343#1 ------------------------------------------------------------
consensus_9343#0 AAATTCCGATCCAACCACACGAATAAAAGCAGCAGTAGTATGATGCGCGACTGCTTTGGC 600
consensus_9343#1 ------------------------------------------------------------
consensus_9343#0 CAACATTGTCTTCCCACAACCTGGAGGACCATACATTAGAACACCTCTAGGTGGGTCAAT 660
consensus_9343#1 ------------------------------------------------------------
consensus_9343#0 CCCAATTTGCTTGTATAATTCGAAATGAGTTAGAGGCAATTCAACAGCTTCTCTCACTTC 720
consensus_9343#1 ------------------------------------------------------------
consensus_9343#0 CTGCTTCTGAATATCCATACCACCAATATCAGAGTAGGATACATCAGGTTTCTCACCAGC 780
consensus_9343#1 ------------------------------------------------------------
consensus_9343#0 TTGGAGCATCGTGATACTACTGTCTGCTTCTGGGGGAACGACATCAACCAAAGCATTGCT 840
consensus_9343#1 ---------------------------------------GACATCAACCANAGCATTGCT 21
*********** *********
consensus_9343#0 GTGTTTGTGGAGAGCGACGCTGGCACTTGGCTTCAACAGCTCGCGATCAATTGTAGATAA 900
consensus_9343#1 GTGTTTGTGGAGAGCGACGCTGGCACTTGGCTTCAACAGCTCGCGATCAATTGTAGATAA 81
************************************************************
consensus_9343#0 TATTCGAACGTAGTAATTCGAACCGGTTGTGGATCCTACAATACCGGTGCTTTGATCAAC 960
consensus_9343#1 TATTCGAACGTAGTAATTCGAACCGGTTGTGGATCCTACAATACCGGTGCTTTGATCAAC 141
************************************************************
consensus_9343#0 AGCTTCTAGAAACTGTCCGATAACAAGCGGGACACTTTTGATCCGCTTGACCTCTTCTTG 1020
consensus_9343#1 AGCTTCTAGAAACTGTCCGATAACAAGCGGGACACTTTTGATCCGCTTGACCTCTTCTTG 201
************************************************************
consensus_9343#0 TGCATGTAAATACTCCTTTTTCAAATTTTTCTGTTCATCTTTGATATAGTTTTCTTGTAC 1080
consensus_9343#1 TGCATGTAAATACTCCTTTTTCAAATTTTTCTGCTTCTGAAT-ATCCATACCACCAATAT 260
********************************* * * * ** * * **
consensus_9343#0 CTGAATGAACTCAATTTGCTTTTCAAGGATCTTCAGTTTTACATAAAGATCTTCTTCGCT 1140
consensus_9343#1 CAGAGTAGGATACATCA------------------------------------------- 277
* ** * * **
consensus_9343#0 TAGCTGAAGAGGATCTATATGTCCAAAGTTTATTCCCGAACTTTCAATTGTCTCAAGTTC 1200
consensus_9343#1 ------------------------------------------------------------
consensus_9343#0 CTTTGTAACTTGAGGTGCTAACGCAATCTCTTCCATCGCTT 1241
consensus_9343#1 -----------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||