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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9350#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 955 fasta sequence
[CAGGCCAANAATTCGGCACGAGGGCCAATATGAAATTTAAATCTCATCTTCTAGAAAATAAAGCTCCTGTTACTCGTTCTGAGTTTCCTCTTATTATGGAAAGTTTGCGACAGTATAACGGTTTTATGATTTATTCAGTCACTGTAACAGTCCCACGCAATGGATCTATTTTTCTGAAGTTCTTTGGTATCTCAGACATAGCGCATGTTTATACTGGAGATAAATCTGGGCATTATACATTTCATGGGTCAATACGATATGTAAATAAAACATTTCAATTAAACAACGTGCATGACGTAAATAATATTACTATAATTGCTGAAAATGCCGGACATATTAATTATGGATCTGAAATGTATTCGGATGTAAAGGGTATTCTGGACCGGTAATATTGAATGGAAAAGAACTTCGAGATTGGACAATGATTCCAATTAGAGATCCGTTTGCTATAGTGAATATGAATAAAATGAAACATTTTCTGTCAGAAAAGAAGTGGCCAGTACCTGGATCTATTTATCATGGGGTATTCATTGTTGAGGAGTTGGGAGATACTTTCATCCAACCTGATAGTTTTGTGAGAGGAATAATATCAATTAATCGTCACCATGTAGGACGATTTGATCAGCAACAAGGACCACAGCTTCGACTGTATGTACCGAAAACATTTTTAAAACTGGGTAGAAATCATATAACAATCACAGAATTACAAGGTCCTATAAAAAATGATGCACATCATGTTCATATTACATTTCATGATCAAATGCTTTGGAAGTAATTATTTATCATTATGTGAACGTCCGTTTTAAGCCTTACAACTTATTCATTGGACAGAACTAATTTTCAAATTTCTTTTATTCATTATTATTTTTATTGCTGCCTGTTAATATACACAATAAACATTGACCATTTGTTAGATTCTCGTTAGTTTCTAAATGTTCTAAAAGTACATGTGTTT]
[+] EMBL CD080765 [CAGGCCAANAATTCGGCACGAGGGCCAATATGAAATTTAAATCTCATCTTCTAGAAAATAAAGCTCCTGTTACTCGTTCTGAGTTTCCTCTTATTATGGAAAGTTTGCGACAGTATAACGGTTTTATGATTTATTCAGTCACTGTAACAGTCCCACGCAATGGATCTATTTTTCTGAAGTTCTTTGGTATCTCAGACATAGCGCATGTTTATACTGGAGATAAATCTGGGCATTATACATTTCATGGGTCAATACGATATGTAAATAAAACATTTCAATTAAACAACGTGCATGACGTAAATAATATTACTATAATTGCTGAAAATGCCGGACATATTAATTATGGATCTGAAATGTATTCGGATGTAAAGGGTATTCTGGACCGGTAATATTGAATGGAAAAGAACTTCGAGATTGGACAATGATTCCAATTAGAGATCCGTTTGCTATAGTGAATATGAATAAAATGAAACATTTTCTGTCAGAAAAGAAGTGGCCAGTACCTGGATCTATTTATCATGGGGTATTCATTGTTGAGGAGTTGGGAGATACTTTCATCCAACCTGATAGTTTTGTGAGAGGAATAATATCAATTAATCGTCACCATGTAGGACGATTTGATCAGCAACAAGGACCACAGCTTCGACTGTATGTACCG AAACATTTTTAANACTGGGTAGAAATCATATAACAATCACAGAATTACCAGGTCCTATA ]
[-] EMBL CD074689 [ TCGNATGTAAAGGGTATTCTGGACCGGTAATATTGAATGGAAAAGAACTTCGAGATTGGACAATGATTCCAATTAGAGATCCGTTTGCTATAGTGAATATGAATAAAATGAAACATTTTCTGTCAGAAAAGAAGTGGCCAGTACCTGGATCTATTTATCATGGGGTATTCATTGTTGAGGAGTTGGGAGATACTTTCATCCAACCTGATAGTTTTGTGAGAGGAATAATATCAATTAATCGTCACCATGTAGGACGATTTGATCAGCAACAAGGACCACAGCTTCGACTGTATGTACCGAAAACATTTTTAAAACTGGGTAGAAATCATATAACAATCACAGAATTACAAGGTCCTATAAAAAATGATGCACATCATGTTCATATTACATTTCATGATCAAATGCTTTGGAAGTAATTATTTATCATTATGTGAACGTCCGTTTTAAGCCTTACAACTTATTCATTGGACAGAACTAATTTTCAAATTTCTTTTATTCATTATTATTTTTATTGCTGCCTGTTAATATACACAATAAACATTGACCATTTGTTAGATTCTCGTTAGTTTCTAAATGTTCTAAAAGTACATGTGTTT]
[-] EMBL CD077259 [ CGTNTGCTATAGTGAATATGAATAAAATGAAACATTTTCTGTCAGAAAAGAAGTGGCCAGTACCTGGATCTATTTATCATGGGGTATTCATTGTTGAGGAGTTGGGAGATACTTTCATCCAACCTGATAGTTTTGTGAGAGGAATAATATCAATTAATCGTCACCATGTAGGACGATTTGATCAGCAACAAGGACCACAGCTTCGACTGTATGTACCGAAAACATTTTTAAAACTGGGTAGAAATCATATAACAATCACAGAATTACAAGGTCCTATAAAAAATGATGCACATCATGTTCATATTACATTTCATGATCAAATGCTTTGGAAGTAATTATTTATCATTATGTGAACGTCCGTTTTAAGCCTTACAACTTATTCATTGGACAGAACTAATTTTCAAATTTCTTTTATTCATTATTATTTTTATTGCTGCCTGTTAATATACACAATAAACATTGACCATTTGTTAGATTCTCGTTAGTTTCTAAATGTTCTAAAAGTACATGTGTTT]
[-] EMBL CD075819 [ TTGCTATAGTGAATATGAATAAAATGAACCATTTTCTGTCAGAAAAGAAGTGGCCAGTACCTGGATCTATTTATCATGGGGTATTCATTGTTGAGGAGTTGGGAGATACTTTCATCCAACCTGATAGTTTTGTGAGAGGAATAATATCAATTAATCGTCCCCATGTAGGACGATTTGATCAGCAACAAGGACCCCAGCTTCGACTGTATGTACCGAAAACATTTTTAAAACTGGGTAGAAATCATATACCAATCCCAGAATTCCAAGGTCCTATAAAAAATGATGCACATCATGTTCATATTACATTTCATGATCAAATGCTTTGGAAGTAATTATTTATCATTATGTGAACGTCCGTTTTAAGCCTTACAACTTATTCATTGGACAGAACTAATTTTCAAATTTCTTTTATTCATTATTATTTTTATTGCTGCCTGTTAATATACCCAATAAACATTGCCCATTTGTTAGATTCTCGTTAGTTTTTAAATGTTTTAAAAGTACATGTGTTT]
consensusID : consensus_9350#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 825 fasta sequence
[AGCGTAAATATGTTAGTCCTTTCACGGTGGAACTAATTTTGGATATTGGAACGGTGGTGCAATGACCTGAATCATCAATTACGAGTTATGATTATGATGCTCCAATCAGTGAAGCTGGTGATATAACAAGAAAATATATGATTATAAGAGATCTACTTTTCCGGAGAAAAGGCGCTG-AACCACCGAAGTTGCCAAGAAATACTACAAAGATTTCGTATGGTTGTGTCAATATGAAATTTAAATCTCATCTTCTAGAAAATAAAGCTCCTGTTACTCGTTCTGAGTTTCCTCTTATTATGGAAAGTTTGCGACAGTATAACGGTTTTATGATTTATTCAGTCACTGTAACAGTCCCACGCAATGGATCTATTTTTCTGAAGTTCTTTGGTATCTCAGACATAGCGCATGTTTATACTGGAGATAAATCTGGGCATTATACATTTCATGGGTCAATACGATATGTAAATAAAACATTTCAATTAAACAACGTGCATGACGTAAATAATATTACTATAATTGCTGAAAATGCCGGACATATTAATTATGGATCTGAAATGTATTCGGATGTAAAGGGTATTACTGGACCGGTAATATTGAATGGAAAAGAACTTCGAGATTGGACAATGATTCCAATTAGAGATCCGTTTGCTATAGTGAATATGAATAAAATGAAACATTNTCTGTCAGAAAAGAAGTGGCCAGTACCTGGATCTATTTATCATGGGGTATTCATTGTTGAGGAGTTGGGAGATACTTTCATCCAACCTGATAGTTNTGTGAGAGGAATAATATCAATTAATCGTCACCATGTAGGACGATTTGATN]
[+] EMBL CD126253 [AGCGTAAATATGTTAGTCCTTTCACGGTGGAACTAATTTTGGATATTGGAACGGTGGTGCAATGACCTGAATCATCAATTACGAGTTATGATTATGATGCTCCAATCAGTGAAGCTGGTGATATAACAAGAAAATATATGATTATAAGAGATCTACTTTTCCGGAGAAAAGGCGCTGTAACCACCGAAGTTGTCAACAAATACTACAAAGATTTCGTATGGTTGTGTCAATATGAAATTTAAATCTCATCTTCTAGAAAATAAAGCTCCTGTTACTCGTTCTGAGTTTCCTCTTATTATGGAAAGTTTGCGACAGTATAACGGTTTTATGATTTATTCAGTCACTGTAACAGTCCCACGCAATGGATCTATTTTTCTGAAGTTCTTTGGTATCTCAGACATAGCGCATGTTTATACTGGAGATAAATCTGGGCATTATACATTTCATGGGTCAATACGATATGTAAATAAAACATTTCAATTAAACAACGTGCATGACGTAAATAATATTACTATAATTGCTGAAAATGCCGGAgct ]
[+] EMBL CD082207 [ acgaggacGGAACTAATTTTGGATTTTGGAACGGTGGTGCTA GACCTGAATCATCAATCACGAGTTATGATTATGATGCTCCAATCAGTGAAGCTGGTGATATAACAAGAAAATATATGATAATAAGAGATCTACTTTTCCGGAGAAAAGGCACTG AACCACCGAAGTTGCCAAGAAATACTACAAAGATTTCGTATGGTTGTGTCAATATGAAATTTAAATCTCATCTTCTAGAAAATAAAGCTCCTGTTACTCGTTCTGAGTTTCCTCTTATTATGGAAAGTTTGCGACAGTATAACGGTTTTATGATTTATTCAGTCACTGTAACAGTCCCACGCAATGGATCTATTTTTCTGAAGTTCTTTGGTATCTCAGACATAGCGCATGTTTATACTGGAGATAAATCTGGGCATTATACATTTCATGGGTCAATACGATATGTAAATAAAACATTTCAATTAAACAACGTGCATGACGTAAATAATATTACTATAATTGCTGAAAATGCCGGACATATTAATTATGGATCTGAAATGTATTCGGATGTAAAGGGTATTACTGGACCGGTAATATTGAATGGAAAAGAACTTCGAGATTGGACAATGATTCCAATTAGAGATCCGTTTGCTATAGTGAATATGAATAAAATGAAACATTNTCTGTCAGAAAA ]
[+] EMBL CD081978 [ G AACCACCGAAGTTGCCAAGAAATACTACAAAGATTTCGTATGGTTGTGTCAATATGAAATTTAAATCTCATCTTCTAGAAAATAAAGCTCCTGTTACTCGTTCTGAGTTTCCTCTTATTATGGAAAGTTTGCGACAGTATAACGGTTTTATGATTTATTCAGTCACTGTAACAGTCCCACGCAATGGATCTATTTTTCTGAAGTTCTTTGGTATCTCAGACATAGCGCATGTTTATACTGGAGATAAATCTGGGCATTATACATTTCATGGGTCAATACGATATGTAAATAAAACATTTCAATTAAACAACGTGCATGACGTAAATAATATTACTATAATTGCTGAAAATGCCGGACATATTAATTATGGATCTGAAATGTATTCGGATGTAAAGGGTATTACTGGACCGGTAATATTGAATGGAAAAGAACTTCGAGATTGGACAATGATTCCAATTAGAGATCCGTTTGCTATAGTGAATATGAATAAAATGAAACATTTTCTGTCAGAAAAGAAGTGGCCAGTACCTGGATCTATTTATCATGGGGTATTCATTGTTGAGGAGTTGGGAGATACTTTCATCCAACCTGATAGTTNTGTGAGAGGAATAATATCAATTAATCGTCACCATGTAGGACGATTTGATN]
[+] EMBL CD083885 [ GCATGA TAAATAATATTACTATAATTGCTGAAAATGCCGGACATATTAATTATGGATCTGAAATGTATTCGGATGTAAAGGGTATTAC ]
consensusID : consensus_9350#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 368 fasta sequence
[AGCACGCCTACATTTGGGGGAAAATGTCATAATTTTTACATCGGATGGTCCATCCAACGGTTTATTAAAATGTGGTTCGTCTGACAAACGCTATCTAGCAACAGTTAACTTTGGTCCTACAACTGCTCCTGTACCTAAGGTTTTCAAAGTATTGGAGGATTTCCGACAGAATCAACCCTGGGTAAATAGTGAATATTATGTTGGTTGGTTAGACGTGTGGGGCGGGGATCATCATAAAACTAATCCTGAATGGGCGGTGGATGGACTGAATCGCCTAATCAGCTACTCGATGAGAGTCAACGTAAATATGTATATGTTTCAGGGTGGAACTAATTTTGGATTTTGGAACGGTGGTGCAAGACCTGAAT]
[+] EMBL AW017004 [AGCACGCCTACATTTGGGGGAAAATGTCATAATTTTTACATCGGATGGTCCATCCAACGGTTTATTAAAATGTGGTTCGTCTGACAAACGCTATCTAGCAACAGTTAACTTTGGTCCTACAACTGCTCCTGTACCTAAGGTTTTCAAAGTATTGGAGGATTTCCGACAGAATCAACCCTGGGTAAATAGTGAATATTATGTTGGTTGGTTAGACGTGTGGGGCGGGGATCATCATAAAACTAATCCTGAATGGGCGGTGGATGGACTGAATCGCCTAATCAGCTACTCGATGAGAGTCAACGTAAATATGTATATGTTTCAGGGTGGAACTAATTTTGGATTTTGGAACGGTGGTGCAAGACCTGAAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9350#0 ------------------------------------------------------------
consensus_9350#1 AGCGTAAATATGTTAGTCCTTTCACGGTGGAACTAATTTTGGATATTGGAACGGTGGTGC 60
consensus_9350#2 ------------------------------------------------------------
consensus_9350#0 ------------------------------------------------------------
consensus_9350#1 AATGACCTGAATCATCAATTACGAGTTATGATTATGATGCTCCAATCAGTGAAGCTGGTG 120
consensus_9350#2 ------------------------------------------------------------
consensus_9350#0 ------------------------------------------------------------
consensus_9350#1 ATATAACAAGAAAATATATGATTATAAGAGATCTACTTTTCCGGAGAAAAGGCGCTGAAC 180
consensus_9350#2 ------------------------------------------------------------
consensus_9350#0 -------------------CAGGCCAANAATTCGGCACGA--GGGCCAATATGAAATTTA 39
consensus_9350#1 CACCGAAGTTGCCAAGAAATACTACAAAGATTTCGTATGGTTGTGTCAATATGAAATTTA 240
consensus_9350#2 ------------------------------------------------------------
consensus_9350#0 AATCTCATCTTCTAGAAAATAAAGCTCCTGTTACTCGTTCTGAGTTTCCTCTTATTATGG 99
consensus_9350#1 AATCTCATCTTCTAGAAAATAAAGCTCCTGTTACTCGTTCTGAGTTTCCTCTTATTATGG 300
consensus_9350#2 ------------------------------------------------------------
consensus_9350#0 AAAGTTTGCGACAGTATAACGGTTTTATGATTTATTCAGTCACTGTAACAGTCCCACGCA 159
consensus_9350#1 AAAGTTTGCGACAGTATAACGGTTTTATGATTTATTCAGTCACTGTAACAGTCCCACGCA 360
consensus_9350#2 -----------------------------------------------------------A 1
*
consensus_9350#0 ATGGATCTATTTTTCTGAAGTTCTTTGGTATCTCAGACATAGCGCATGTTTATACTGGAG 219
consensus_9350#1 ATGGATCTATTTTTCTGAAGTTCTTTGGTATCTCAGACATAGCGCATGTTTATACTGGAG 420
consensus_9350#2 GCACGCCTACATTTGGGGGAAAATGTCATAATTTTTACAT--CGGATGGTCCATCCAACG 59
*** *** * * * ** * **** ** *** * * *
consensus_9350#0 ATAAATCTGGGCATTATACATTTCATGGGTCAATACGATATGTAAATAAAACATTTCAAT 279
consensus_9350#1 ATAAATCTGGGCATTATACATTTCATGGGTCAATACGATATGTAAATAAAACATTTCAAT 480
consensus_9350#2 GTTTATTAAAATGTGGTTCGTCTGACA----AACGCTATCTAGCAACAGTTAACTTTGGT 115
* ** * * * * * * ** * ** * ** * * ** *
consensus_9350#0 TAAACAACGTGCATGACGTAAATAATATTACTATAATTGCTGAAAATGCCGGACATA-TT 338
consensus_9350#1 TAAACAACGTGCATGACGTAAATAATATTACTATAATTGCTGAAAATGCCGGACATA-TT 539
consensus_9350#2 CCTACAAC-TGC-TCCTGTACCTAAGGTTTTCAAAGTATTGGAGGATTTCCGACAGAATC 173
***** *** * *** *** ** * * * ** ** * **** * *
consensus_9350#0 AATTATGGATCTGAAATGTATTCGGATGTAAAGGGTATT-CTGGACCGGTAATATTGAAT 397
consensus_9350#1 AATTATGGATCTGAAATGTATTCGGATGTAAAGGGTATTACTGGACCGGTAATATTGAAT 599
consensus_9350#2 AACCCTGGGTAAATAGTGAATATTATGTTGGTTGGTTAGACGTGTGGGGCGGGGATCATC 233
** *** * * ** ** * *** * * ** * *
consensus_9350#0 GGAAAAGAACTTCGAGATTGGACAATGATTCCAATTAGAGATCCGTTTGCTATAGTGAAT 457
consensus_9350#1 GGAAAAGAACTTCGAGATTGGACAATGATTCCAATTAGAGATCCGTTTGCTATAGTGAAT 659
consensus_9350#2 ATAAAACTAATCCT-GAATGGGCGGTGGATGGACTGAATCGCCTAATCAGC-TACTCGAT 291
**** * * * ** *** * ** * * * * * * ** * **
consensus_9350#0 ATGAATAAAATGAAACATTTTCTGTCAGAAAAGAAGTGGCCAGTACCTGGATCTATTTAT 517
consensus_9350#1 ATGAATAAAATGAAACATTNTCTGTCAGAAAAGAAGTGGCCAGTACCTGGATCTATTTAT 719
consensus_9350#2 GAGAGTCAACGTAAATAT-GTATATGTTTCAGGGTGGAACTAAT-TTTGGATTTTGGAAC 349
** * ** *** ** * * * * * * * * * ***** * *
consensus_9350#0 CATGGGGTATTCATTGTTGAGGAGTTGGGAGATACTTTCATCCAACCTGATAGTTTTGTG 577
consensus_9350#1 CATGGGGTATTCATTGTTGAGGAGTTGGGAGATACTTTCATCCAACCTGATAGTTNTGTG 779
consensus_9350#2 GGTGGTGCAAGACCTGAAT----------------------------------------- 368
*** * * **
consensus_9350#0 AGAGGAATAATATCAATTAATCGTCACCATGTAGGACGATTTGATCAGCAACAAGGACCA 637
consensus_9350#1 AGAGGAATAATATCAATTAATCGTCACCATGTAGGACGATTTGATN-------------- 825
consensus_9350#2 ------------------------------------------------------------
consensus_9350#0 CAGCTTCGACTGTATGTACCGAAAACATTTTTAAAACTGGGTAGAAATCATATAACAATC 697
consensus_9350#1 ------------------------------------------------------------
consensus_9350#2 ------------------------------------------------------------
consensus_9350#0 ACAGAATTACAAGGTCCTATAAAAAATGATGCACATCATGTTCATATTACATTTCATGAT 757
consensus_9350#1 ------------------------------------------------------------
consensus_9350#2 ------------------------------------------------------------
consensus_9350#0 CAAATGCTTTGGAAGTAATTATTTATCATTATGTGAACGTCCGTTTTAAGCCTTACAACT 817
consensus_9350#1 ------------------------------------------------------------
consensus_9350#2 ------------------------------------------------------------
consensus_9350#0 TATTCATTGGACAGAACTAATTTTCAAATTTCTTTTATTCATTATTATTTTTATTGCTGC 877
consensus_9350#1 ------------------------------------------------------------
consensus_9350#2 ------------------------------------------------------------
consensus_9350#0 CTGTTAATATACACAATAAACATTGACCATTTGTTAGATTCTCGTTAGTTTCTAAATGTT 937
consensus_9350#1 ------------------------------------------------------------
consensus_9350#2 ------------------------------------------------------------
consensus_9350#0 CTAAAAGTACATGTGTTT 955
consensus_9350#1 ------------------
consensus_9350#2 ------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||