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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9351#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 814 fasta sequence
[GCCAGAATTTGGCAGAGGGCGCTTCGATTGAGTGGCTACCATCGTAGCTCAGTAATTTCTTTTACATGGCTTCTGAGCGTTCCTGGAAGCCTCTGAGTCTTTTTCACGTAGAATATCCGGAAGCTGATGCTTTTGGAAAGCTCCTGGCGTATTCCAGTATGGTACCAATATTCATTATTTTCAGCAACATAACTCTTATTATGTCGAGAAGAGATTTGCATACAGTATTATCAATTGTAGGATTAACGCTTAAGTCTCAAGATATTTTATTTTTGTGGTTGTCTGATCAATGAATTGAGTAACTATCTTCTCAAATATATCATCAAGCAACCAAGGCCTTTCCCAATCATTCACCCAGGTATTAAGTCATCAGGTATGCCTTCAAACCATGCACAATTCATGGGCTTTTTTTGTGCATACATTGGATTTTTCCTCTTCATAAGCGATCCTTCAGTCGCCAGTTCACAACATCTGTTTACTTAGTTTGTGCATCAATTACTGCATTAGTTTGCTACAGCAGGGTTTATTTATTGTATCATACTTCTACTCAAGTTGTAGTTGGGATCATGATAGGTGGAATTTCCGGGATAATCTGGTTCTTAATTGTTCACTATGCAATAACACCGATATTTCCACGGTTCACGGATAGGTTGGATTGGTCAATTACTAATGTTGCAAGACTNTACACATATCAACAATTNTATGCATTNTGAATATACTATTGTGCAGAATTATATTCAAACGAAATCCGGAAGGGCCGCGTGAGAAATATAACGTNTGTTCATTTTTGTGACCGGTTTCTCTTGNTATAACG]
[+] EMBL CD080829 [GCCAGAATTTGGCAGAGGGCGCTTCGATTGAGTGGCTACCATCGTAGCTCAGTAATTTCTTTTACATGGCTTCTGAGCGTTCCTGGAAGCCTCTGAGTCTTTTTCACGTAGAATATCCGGAAGCTGATGCTTTTGGAAAGCTCCTGGCGTATTCCAGTATGGTACCAATATTCATTATTTTCAGCAACATAACTCTTATTATGTCGAGAAGAGATTTGCATACAGTATTATCAATTGTAGGATTAACGCTTAAGTCTCAAGATATTTTATTTTTGTGGTTGTCTGATCAATGAATTGAGTAACTATCTTCTCAAATATATCATCAAGCAACCAAGGCCTTTCCCAATCATTCACCCAGGTATTAAGTCATCAGGTATGCCTTCAAACCATGCACAATTCATGGGCTTTTTTTGTGCATACATTGGATTTTTCCTCTTCATAAGCGATCCTTCAGTCGCCAGTTCACAACATCTGTTTACTTAGTTTGTGCATCAATTACTGCATTAGTTTGCTACAGCAGGGTTTATTTATTGTATCATACTTCTACTCAAGTTGTAGTTGGGATCATGATAGGTGGAATTTCCGGGATAATCTGGTTCTTAATTGTTCACTATGCAATAACACCGATATTTCCACGGTTCACGGATAGGTTGGATTGGTCAATTACTAATGTTGCAAGACTNTACACATATCAACAATTNTATGCATTNTGAATATACTATTGTGCAGAATTATATTCAAACGAAATCCGGAAGGGCCGCGTGAGAAATATAACGTNTGTTCATTTTTGTGACCGGTTTCTCTTGNTATAACG]
[+] EMBL CD133468 [ AGTGGCTACCATCGTAGCTCAGTAATTTCTTTTACATGGCTTCTGAGCGTTCCTGGAAGCCTCTGAGTCTTTTTCACGTAGAATATCCGGAAGCTGATGCTTTTGGAAAGCTCCTGGCGTATTCCAGTATGGTACCAATATTCATTATTTTCAGCAACATAACTCTTATTATGTCGAGAAGAGATATGCATACAGTATTATCAATTGTAGGATTAACGCTTAAGTCTCAAGATATTTTATTTTTGTGGTTGTCTGATCAATGAATTGAGTAACTATCTTCTCAAATATATCATCAAGCAACCAAGGCCTTTCCCAATCAT ]
consensusID : consensus_9351#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 758 fasta sequence
[ACCATCGTAGCTCAGTAATTTCTTTTACATGGCTTCTGAGCGTTCCTGGAAGCCTCTGAGTCTTTTTCACGTAGAATATCCGGAAGCTGATGCTTTTGGAAAGCTCCTGGCGTATTCCAGTATGGTACCAATATTCATTATTTTCAGCAACATAACTCTTATTATGTCGAGAAGAGATTTGCATACAATATTTTATTTTTGTGGTTGTCTGATCAATGAATTGAGTAACTATCTTCTCAAATATATCATCAAGCAACCAA-GGCCTTTCCCAATCATTCACCCAGGTATTAAGTCATCAGGTATGCCTTCAAACCATGCACAATTCATGGGCTTTTTTTGTGCATACATTGGATTTTTCCTCTTCATAAGGCTCAATCAGCGATCCTTCAGTCGCCAGTTCACAACATCTGTTTACTTAGTTTGTGCATCAATTACTGCATTAGTTTGCTACAGCAGGGTTTATTTATTGTATCATACTTCTACTCAAGTTGTAGTTGGGATCATGATAGGTGGAATTTCCGGGATAATCTGGTTCTTAATTGTTCACTATGCAATAACACCGATATTTCCACGGTTCACGGATAGTTGGATTGGTCAATTACTAATGTTGCAAGACTTTACACATATCAACAATTTTATGCATTTTGAATATACTATTGTGCAGAATTATATTCA---AACGAAATCCGGAAGGCCCGCGTGAAGAATATAACGTTTTGTTTCATTTTTGTGACCGGTTTCTTCTTTGTAATAAAC-GATTA]
[+] EMBL AI975342 [ACCATCGTAGCTCAGTAATTTCTTTTACATGGCTTCTGAGCGTTCCTGGAAGCCTCTGAGTCTTTTTCACGTAGAATATCCGGAAGCTGATGCTTTTGGAAAGCTCCTGGCGTATTCCAGTATGGTACCAATATTCATTATTTTCAGCAACATAACTCTTATTATGTCGAGAAGAGATTTGCATACAATATTTTATTTTTGTGGTTGTCTGATCAATGAATTGAGTAACTATCTTCTCAAATATATCATCAAGCAACCAA GGCCTTTCCCAATCATTCACCCAGGTATTAAGTCATCAGGTATGCCTTCAAACCATGCACAATTCATGGGCTTTTTTTGTGCATACATTGGATTTTTCCTCTTCATAAGGCTCAATCAGCGATCCTTCAGTCGCCAGTTCACAACATCTGTTTACTTAGTTTGTGCATCAATTACTGCATTAGTTTGCTACAGCAGGGTTTATTTATTGTATCATACTTCTACTCAAGTTGTAGTTGGGATCATGATAGGTGGAATTTCCGGGATAATCTGGTTCTTAATTGTTCACTATGCAATAACACCGATATTTCCACGGTTCACGGATAGTTGGATTGGTCAATTACTAATGTTGCAAGACTTTACACATATCAACAATTTTATGCATTTTGAA ]
[+] EMBL CD083010 [ ctAGTAATTTCTTTTACATGGCTTCTGAGCGTTCCTGGAAGCCTCTGAGTCTTTTTCACGTAGAATATCCGGAAGCTGATGCTTTTGGAAAGCTCCTGGCGTATTCCAGTATGGTACCAATATTCATTATTTTCAGCAACATAACTCTTATTATGTCGAGAAGAGATTTGCATACAATATTTTATTTTTGTGGTTGTCTGATCAATGAATTGAGTAACTATCTTCTCAAATATATCATCAAGCAACCAA GGCCTTTCCCAATCATTCACCCAGGTATTAAGTCATCAGGTATGCCTTCAAACCATGCACAATTCATGGGCTTTTTTTGTGCATACATTGGATTTTTCCTCTTCATAAGGCTCAATCAGCGATCCTTCAGTCGCCAGTTCACAACATCTGTTTACTTAGTTTGTGCATCAATTACTGCATTAGTTTGCTACAGCAGGGTTTATTTATTGTATCATACTTCTACTCAAGTTGTAGTTGGGATCATGATAGGTGGAATTTCCGGGATAATCTGGTTCTTAATTGTTCACTATGCAATAACACCGATATTTCCACGGTTCACGGATAGTTGGATTGGTCAATTACTAATGTTGNCAGACTNTACA ]
[+] EMBL BF936825 [ TATCCGGAAGCTGATGCTTTTGGAAAGCTCCTGGCGTATTCCAGTATGGTACCAATATTCATTATTTTCAGCAACATAACTCTTATTATGTCGAGAAGAGATTTGCATACAATATTTTATTTTTGTGGTTGTCTGATCAATGAATTGAGTAACTATCTTCTCAAATATATCATCAAGCAACCAA GGCCTTTCCCAATCATTCACCCAGGTATTAAGTCATCAGGTATGCCTTCAAACCATGCACAATTCATGGGCTTTTTTTGTGCATACATTGGATTTTTCCTCTTCATAAGGCTCAATCAGCGATCCTTCAGTCGCCAGTTCACAACATCTGTTTACTTAGTTTGTGCATCAATTACTGCATTAGTTTGCTACAGCAGGGTTTATTTATTGTATCATACTTCTACTCAAGTTGTAGTTGGGATCATGATAGGTGGAATTTCCGGGATAATCTGGTTCTTAATTGTTCACTATGCAATAACACCGATATTTCCACGGTTCACGGATAGTTGGATTGGTCAATTACTAATGTTGCAAGACTTTACACATATCAACAATTTTATGCATTTTGAATATACTATTGTGCAGAATTATATTCA AACGAAATCCGGAAGGCCCGCGTGAAG ATATTACG ]
[+] EMBL CD081192 [ acgcggnATTTTCANCAACATAACTTTTATTATGTCGAGAACAGATTTGCATACAATATTTTATTTTTGTGGTTGTCTGATCAATGAATTGAGTAACTATCTTCTCAAATATATCATCAAGCAACCAAGGGCCTTTCCCAATCATTCACCCAGGTATTAAGTCATCAGGTATGCCTTCAAACCATGCACAATTCATGGGCTTTTTTTGTGCATACATTGGATTTTTCCTCTTCATAAGGCTCAATCAGCGATCCTTCAGTCGCCAGTT ACAACATCTGTTTACTTAGTTTGTGCATCAATTACTGCATTAGTTTGCTACAGCAGGGTTTATTTATTGTATCATACTTCTACTCAAGTTGTAGTTGGGATCATGATAGGTGGAATTTCCGGGATAATCTGGTTCTTAATTGTTCACTATGCAATAACACCGATATTTCCACGGTTCACGGATAGTTGGATTGGTCAATTACTAATGTTGCAAGACTTTACACATATCAACAATTTTATGCATTTTGAATATACTATTGTGCAGAATTATATTCA AACGAAATCCGGAAGGCCCGCGTGAAGAATATAACGTTTTGTTTCATTTTTGTGACCGGTTTCTTCTTTGTAATAAAC GATT ]
[-] EMBL CD075020 [ TTTTCAGCAACATAACTCTTATTATGTCGAGAAGAGATTTGCATACAATATTTTATTTTTGTGGTTGTCTGATCAATGAATTGAGTAACTATCTTCTCAAATATATCATCAAGCAACCAA GGCCTTTCCCAATCATTCACCCAGGTATTAAGTCATCAGGTATGCCTTCAAACCATGCACAATTCATGGGCTTTTTTTGTGCATACATTGGATTTTTCCTCTTCATAAGGCTCAATCAGCGATCCTTCAGTCGCCAGTTCACAACATCTGTTTACTTAGTTTGTGCATCAATTACTGCATTAGTTTGCTACAGCAGGGTTTATTTATTGTATCATACTTCTACTCAAGTTGTAGTTGGGATCATGATAGGTGGAATTTCCGGGATAATCTGGTTCTTAATTGTTCACTATGCAATAACACCGATATTTCCACGGTTCACGGATAGTTGGATTGGTCAATTACTAATGTTGCAAGACTTTACACATATCAACAATTTTATGCATTTTGAATATACTATTGTGCAGAATTATATTCA AACGAAATCCGGAAGGCCCGCGTGAAGAATATAACGTTTTGTTTCATTTTTGTGACCGGTTTCTTCTTTGTAAGAAACGGATTA]
[-] EMBL CD076595 [ ttgGTCTGATCAATGAATTGAGTAACTATCTTCTCAAATATATCATCAAGCAACCAA GGCCTTTCCCAATCATTCACCCAGGTATTAAGTCATCAGGTATGCCTTCAAACCATGCACAATTCATGGGCTTTTTTTGTGCATACATTGGATTTTTCCTCTTCATAAGGCTCAATCAGCGATCCTTCAGTCGCCAGTTCACAACATCTGTTTACTTAGTTTGTGCATCAATTACTGCATTAGTTTGCTACAGCAGGGTTTATTTATTGTATCATACTTCTACTCAAGTTGTAGTTGGGATCATGATAGGTGGAATTTCCGGGATAATCTGGTTCTTAATTGTTCACTATGCAATAACACCGATATTTCCACGGTTCACGGATAGTTGGATTGGTCAATTACTAATGTTGCAAGACTTTACACATATCAACAATTTTATGCATTTTGAATATACTATTGTGCAGAATTATATTCATAGAACGAAATCCGGAAGGCCCGCGTTAAGAATATAACGTTTTGTTTCATTTTTGTGACCGGTTTCTTCTTTGTAATAAAC GATTA]
consensusID : consensus_9351#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 490 fasta sequence
[CGGCACGAGGCCGGAAGGTAAGAAGCTATTTGTTTTTGTACGTATTTCAAGCTGATGCTTTTGGAAAGCTCCTGGCGTATTCCAGTATGGTACCAATATTCATTATTTTCAGCAACATAACTCTTATTATGTCGAGAAGAGATTTGCATACAGTATTATCAATTGTAGGATTAACGCTTAAGTCTCAAGATATTTTATTTTTGTGGTTGTCTGATCAATGAATTGAGTAACTATCTTCTCAAATATATCATCAAGCAACCAAGGCCTTTCCCAATCAGTTTGTTAATAAATAATGCTTACAGATTTTTGTACATACAGTTCACCCAGGTATTAAGTCATCAGGTATGCCTTCAAACCATGCACAATTCATGGGCTTTTTTTGTGCATACATTGGATTTTTCCTCTTCATAAGCGATCCTTCAGTCGCCAGTTCACAACATCTGTTTACTTAGTTTGTGCATCAATTACTGCATTAGTTTGCTACAGCAGT]
[+] EMBL CD081297 [CGGCACGAGGCCGGAAGGTAAGAAGCTATTTGTTTTTGTACGTATTTCAAGCTGATGCTTTTGGAAAGCTCCTGGCGTATTCCAGTATGGTACCAATATTCATTATTTTCAGCAACATAACTCTTATTATGTCGAGAAGAGATTTGCATACAGTATTATCAATTGTAGGATTAACGCTTAAGTCTCAAGATATTTTATTTTTGTGGTTGTCTGATCAATGAATTGAGTAACTATCTTCTCAAATATATCATCAAGCAACCAAGGCCTTTCCCAATCAGTTTGTTAATAAATAATGCTTACAGATTTTTGTACATACAGTTCACCCAGGTATTAAGTCATCAGGTATGCCTTCAAACCATGCACAATTCATGGGCTTTTTTTGTGCATACATTGGATTTTTCCTCTTCATAAGCGATCCTTCAGTCGCCAGTTCACAACATCTGTTTACTTAGTTTGTGCATCAATTACTGCATTAGTTTGCTACAGCAGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9351#0 GCCAGAATTTGGCAGAGGGCGCTTCGATTGAGTGGCTACCATCGTAGCTCAGTAATTTCT 60
consensus_9351#1 -------------------------------------ACCATCGTAGCTCAGTAATTTCT 23
consensus_9351#2 ------------------------------------------------------------
consensus_9351#0 TTTACATGGCTTCTGAGCGTTCCTGGAAGCCTCTGAGTCTTTTTCACGTAGAATATCCGG 120
consensus_9351#1 TTTACATGGCTTCTGAGCGTTCCTGGAAGCCTCTGAGTCTTTTTCACGTAGAATATCCGG 83
consensus_9351#2 ------------CGGCACGAGGCCGGAAGGTAAGAAGCTATTTGTTTTTGTACGTATTTC 48
* * ** * ***** ** *** * *
consensus_9351#0 AAGCTGATGCTTTTGGAAAGCTCCTGGCGTATTCCAGTATGGTACCAATATTCATTATTT 180
consensus_9351#1 AAGCTGATGCTTTTGGAAAGCTCCTGGCGTATTCCAGTATGGTACCAATATTCATTATTT 143
consensus_9351#2 AAGCTGATGCTTTTGGAAAGCTCCTGGCGTATTCCAGTATGGTACCAATATTCATTATTT 108
************************************************************
consensus_9351#0 TCAGCAACATAACTCTTATTATGTCGAGAAGAGATTTGCATACAGTATTATCAATTGTAG 240
consensus_9351#1 TCAGCAACATAACTCTTATTATGTCGAGAAGAGATTTGCATACA---------------- 187
consensus_9351#2 TCAGCAACATAACTCTTATTATGTCGAGAAGAGATTTGCATACAGTATTATCAATTGTAG 168
********************************************
consensus_9351#0 GATTAACGCTTAAGTCTCAAGATATTTTATTTTTGTGGTTGTCTGATCAATGAATTGAGT 300
consensus_9351#1 ---------------------ATATTTTATTTTTGTGGTTGTCTGATCAATGAATTGAGT 226
consensus_9351#2 GATTAACGCTTAAGTCTCAAGATATTTTATTTTTGTGGTTGTCTGATCAATGAATTGAGT 228
***************************************
consensus_9351#0 AACTATCTTCTCAAATATATCATCAAGCAACCAAGGCCTTTCCCAATCA----------- 349
consensus_9351#1 AACTATCTTCTCAAATATATCATCAAGCAACCAAGGCCTTTCCCAATCA----------- 275
consensus_9351#2 AACTATCTTCTCAAATATATCATCAAGCAACCAAGGCCTTTCCCAATCAGTTTGTTAATA 288
*************************************************
consensus_9351#0 ------------------------------TTCACCCAGGTATTAAGTCATCAGGTATGC 379
consensus_9351#1 ------------------------------TTCACCCAGGTATTAAGTCATCAGGTATGC 305
consensus_9351#2 AATAATGCTTACAGATTTTTGTACATACAGTTCACCCAGGTATTAAGTCATCAGGTATGC 348
******************************
consensus_9351#0 CTTCAAACCATGCACAATTCATGGGCTTTTTTTGTGCATACATTGGATTTTTCCTCTTCA 439
consensus_9351#1 CTTCAAACCATGCACAATTCATGGGCTTTTTTTGTGCATACATTGGATTTTTCCTCTTCA 365
consensus_9351#2 CTTCAAACCATGCACAATTCATGGGCTTTTTTTGTGCATACATTGGATTTTTCCTCTTCA 408
************************************************************
consensus_9351#0 TAAG----------CGATCCTTCAGTCGCCAGTTCACAACATCTGTTTACTTAGTTTGTG 489
consensus_9351#1 TAAGGCTCAATCAGCGATCCTTCAGTCGCCAGTTCACAACATCTGTTTACTTAGTTTGTG 425
consensus_9351#2 TAAG----------CGATCCTTCAGTCGCCAGTTCACAACATCTGTTTACTTAGTTTGTG 458
**** **********************************************
consensus_9351#0 CATCAATTACTGCATTAGTTTGCTACAGCAGGGTTTATTTATTGTATCATACTTCTACTC 549
consensus_9351#1 CATCAATTACTGCATTAGTTTGCTACAGCAGGGTTTATTTATTGTATCATACTTCTACTC 485
consensus_9351#2 CATCAATTACTGCATTAGTTTGCTACAGCAGT---------------------------- 490
*******************************
consensus_9351#0 AAGTTGTAGTTGGGATCATGATAGGTGGAATTTCCGGGATAATCTGGTTCTTAATTGTTC 609
consensus_9351#1 AAGTTGTAGTTGGGATCATGATAGGTGGAATTTCCGGGATAATCTGGTTCTTAATTGTTC 545
consensus_9351#2 ------------------------------------------------------------
consensus_9351#0 ACTATGCAATAACACCGATATTTCCACGGTTCACGGATAGGTTGGATTGGTCAATTACTA 669
consensus_9351#1 ACTATGCAATAACACCGATATTTCCACGGTTCACGGATAG-TTGGATTGGTCAATTACTA 604
consensus_9351#2 ------------------------------------------------------------
consensus_9351#0 ATGTTGCAAGACTNTACACATATCAACAATTNTATGCATTNTGAATATACTATTGTGCAG 729
consensus_9351#1 ATGTTGCAAGACTTTACACATATCAACAATTTTATGCATTTTGAATATACTATTGTGCAG 664
consensus_9351#2 ------------------------------------------------------------
consensus_9351#0 AATTATATTCAAACGAAATCCGGAAGGGCCGCGTGAGAAATATAACGTNTG--TTCATTT 787
consensus_9351#1 AATTATATTCAAACGAAATCCGGAAGGCCCGCGTGAAGAATATAACGTTTTGTTTCATTT 724
consensus_9351#2 ------------------------------------------------------------
consensus_9351#0 TTGTGACCGGTTTCTCTTGNTATAACG-------- 814
consensus_9351#1 TTGTGACCGGTTTCTTCT-TTGTAATAAACGATTA 758
consensus_9351#2 -----------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||