These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9352#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1015 fasta sequence [ACTTCTAAAATCTTTGTATTAATTAGTAATAAAGACAAACATTACGAATTGTATGCATACATATACATACAAAGTGGACAACAAAAGTTACTGAACAAACAAAGGGAAAATAGGTTTTGGAGAAAAGAAAGCAACGACTGGATGTACAAAGTCATACATATAAATAAATACATATGCAAAAAATGTAAATCAGAACGGCGTAAAAACAATTCACAGAGTAGATATTACAGCTTTGGTTTAGTTTATATATGTATATCTGGCATACACTTCAGGTATGACACATTAATTAATAGTTTTAAATAGAATAATGTACACAAATGTGATAAAATCACGACATGAGCGAACGTAAGTTATGCGAAGATTTGTATATATAAATAGGAATTATAAGTAAATGATGAGTTCAGCAGGTATTAAATGAGCGGAAATGAGTTCATAATCACCGGATAATACGAAAAACTTGAAAGAAACAAGTATTAAGAAAAGACTAGATAAAGTTAATTGAGTTTCAATCTTTTCAGTGCATAAAACAGGGAAATAGAATTGTAAATTTGACATAAATACACAACCATATCATCTACCAGTATAGTTAGACAAGAAACAAAAAATCATTAATTACTAAATAAAGTACTATAAAATAAACATAAATGACTAGATAATAAATTAAGCAATTTACATTTTCAG-AAAGGGAGCATTATCATCAGCAACAAAATGAAAAAGAAATACTAAATTACAAAGTAACTTAAGAATTGATACAAAAGAAACGGCGCCAACCCTTTTTAAGAGTTTTACACTTGTTATTGTTCTCTGCTATAATACGAAATGAGTGACTGTCGGTCATTATATGGTTATTGTCAACACTATTATCATTATTAGTAGCTTTTGTGCAATCCCCATTATATGATAATGATCCATTTGACTTTGGTTCACGCAATAATACTGGACCACCTGAATCAGCTACTTTGAGACCACACCAAATAGCTAGATCGAAAACAGTCTTAAGATTTTTCTGAGTCAA] [+] EMBL CD073949 [ACTTCTAAAATCTTTGTATTAATTAGTAATAAAGACAAACATTACGAATTGTATGCATACATATACATACAAAGTGGACAACAAAAGTTACTGAACAAACAAAGGGAAAATAGGTTTTGGAGAAAAGAAAGCAACGACTGGATGTACAAAGTCATACATATAAATAAATACATATGCAAAAAATGTAAATCAGAACGGCGTAAAAACAATTCACAGAGTAGATATTACAGCTTTGGTTTAGTTTATATATGTATATCTGGCATACACTTCAGGTATGACACATTAATTAATAGTTTTAAATAGAATAATGTACACAAATGTGATAAAATCACGACATGAGCGAACGTAAGTTATGCGAAGATTTGTATATATAAATAGGAATTATAAGTAAATGATGAGTTCAGCAGGTATTAAATGAGCGGAAATGAGTTCATAATCACCGGATAATACGAAAAACTTGAAAGAAACAAGTATTAAGAAAAGACTAGATAAAGTTAATTGAGTTTCAATCTTTTCAGTGCATAAAACAGGGAAATAGAATTGTAAATTTGACATAAATACACAACCATATCATCTACCAGTATAGTTAGACAAGAAACAAAAAATCATTAATTACTAAATAAAGTACTATAAAATAAACATAAATGACTAGATAATAAATTAAGCAATTTACATTTTCAG AAAGGGAGCAT ] [-] EMBL AI975122 [ AATTGTATGCATACATATACATACAAAGTGGCCACCAAAAGTTACTGAACAAACAAAGGGAAAATAGGTTTTGGAGAAAAGAAAGCAACGACTGGATGTACAAAGTCATACATATAAATAAATACATATGCAAAAAATGTAAATCAGAACGGCGTAAAAACAATTCACAGAGTAGATATTACAGCTTTGGTTTAGTTTATATATGTATATCTGGCATACACTTCAGGTATGACACATTAATTAATAGTTTTAAATAGAATAATGTACACAAATGTGATAAAATCACGACATGAGCGAACGTAAGTTATGCGAAGATTTGTATATATAAATAGGAATTATAAGTAAATGATGAGTTCAGCAGGTATTAAATGAGCGGAAATGAGTTCATAATCACCGGATAATACGAAAAACTTGAAAGAAACAAGTATTAAGAAAAGACTAGATAAAGTTAATTGAGTTTCAATCTTTTCAGTGCATAAAACAGGGAAATAGAATT ] [+] EMBL CD196797 [ CAGCTTTGGTTTAGTTTATATATGTATATCTGGCATACACTTCAGGTATGACACATTAATTAATAGTTTTAAATAGAATAATGTACACAAATGTGATAAAATCACGACATGAGCGAACGTAAGTTATGCGAAGATTTGTATATATAAATAGGAATTATAAGTAAATGATGAGTTCAGCAGGTATTAAATGAGCGGAAATGAGTTCATAATCACCGGATAATACGAAAAACTTGAAAGAAACAAGTATTAAGAAAAGACTAGATAAAGTTAATTGAGTTTCAATCTTTTCAGTGCATAAAACAGGGAAATAGAATTGTAAATTTGACATAAATACACAACCATATCATCTACCAGTATAGTTAGACAAGAAACAAAAAATCATTAATTACTAAATAAAGTACTATAAAATAAACATAAATGACTAGATAATAAATTAAGCAATTTACATTTTCAG AA ] [+] EMBL CD196747 [ CAGCTTTGGTTTAGTTTATATATGTGTATCTGGCATACACTTCAGGTATGACACATTAATTAATAGTTTTAAATAGAATAATGTACACAAATGTGATAAAATCACGACATGAGCGAACGTAAGTTATGCGAAGATTTGTATATATAAATAGGAATTATAAGTAAATGATGAGTTCAGCAGGTATTAAATGAGCGGAAATGAGTTCATAATCACCGGATAATACGAAAAACTTGAAAGAAACAAGTATTAAGAAAAGACTAGATAAAGTTAATTGAGTTTCAATCTTTTCAGTGCATAAAACAGGGAAATAGAATTGTAAATTTGACATAAATACACAACCATATCATCTACCAGTATAGTTAGACAAGAAACAAAAAATCATTAATTACTAAATAAAGTACTATAAAATAAACATAAATGACTAGATAATAAATTAAGCAATTTAC ] [-] EMBL CD079690 [ GAAAGAAACAAGTA TAAGAAAAGACTAGATANAGTTAATTGAGTTTCAATCTTTTCAGTGCATAAAACAGGGAAATAGAATTGTAAATTTGACATAAATACACAACCATATCATCTACCAGTATAGTTAGACAAGAAACAAAAAATCATTAATTACTAAATAAAGTACTATAAAATAAACATAAATGACTAGATAATAAATTAAGCAATTTACATTTTCAGAAAAGGGAGCATTATCATCAGCAACAAAATGAAAAAGAAATACTAAATTACAAAGTAACTTAAGAATTGATACAAAAGAAACGGCGCCAACCCTTTTTAAGAGTTTTACACTTGTTATTGTTCTCTGCTATAATACGAAATGAGTGACTGTCGGTCATTATATGGTTATTGTCAACACTATTATCATTATTAGTAGCTTTTGTGCAATCCCCATTATATGATAATGATCCATTTGACTTTGGTTCACGCAATAATACTGGACCACCTGAATCAGCTACTTTGAGACCACACCAAATAGCTAGATCGAAAACAGTCTTAAGATTTTTCTGAGTCAA] [+] EMBL CD156583 [ ACTGTCGGTCATTATATGGTTATTGTCAACACTATTATCATTATTAGTAGCTTTTGTGCAATCCCCATTATATGATAATGATCCATTTGACTTTGGTTCACGCAATAATACTGGACCACCTGAATCAGCTACTTTGAGACCACACCAAATAGCTAGATCGAAAACAGTCTTAAGATTTTTCTGAGTCA ] consensusID : consensus_9352#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 591 fasta sequence [AATAGCCAAACATTCGGCCTTTTCCTTATCTATAGGCTCTTCACCAACTTTAGACAATTCTAATAAACGTCCAATATCATTACGTAGATCACAAGCACAACCAATAAGAAGAAATATAGGACCCGGTATTAAATTAGCTTCATTTACACTTTTTAACCCACGACTAGTGTGTACAG-AAGATTTTGATTTAGTGGGTACTGACGCTGAAAAACTATCAGCATTTCTTCGTGTTGTGGATAGGCCGAATAGTTTTGAAGCAGTTTGTTCAGCAGCACTGTTAAGAATAATGGGCGCAGACGCTAGTTCTTTCAACCAAACAGTTTTCAAAGATCTAAAAGTATCTGGTCGGACGACAGAGAAACACAGTAAGATAACATGTGCATCCAAATATGACAAATGTCTCAAAGAACTAACTTCTTCTTTTCCTCCTGTGTCACAGATTTGTAGATGTACTGGTCGTGTATCAGCACACACTTCAACACAAAATGTATCTNAGGCAGATGGCCTGTATTCCGCTGGATAATCATTGGAAGTGTAGCTAACGAACAGGCTAGTTTTTCCAACTTGTTTATCGGCTATTAGGATGCACTT] [-] EMBL CD156702 [AATAGCCAAACATTCGGCCTTTTCCTTATCTATAGGCTCTTCACCAACTTTAGACAATTCTAATAAACGTCCAATATCATTACGTAGATCACAAGCACAACCAATAAGAAGAAATATAGGACCCGGTATTAAATTAGCTTCATTTACACTTTTTAACCCACGACTAGTGTGTACAG AAGATTTTGATTTAGTGGGTACTGACGCTGAAAAACTATCAGCATTTCTTCGTGTTGTGGATAGGCCGAATAGTTTTGAAGCA ] [+] EMBL CD130619 [ TAGACAGTTCTAATAAACGTCCAATATCATTACGTAGATCACAAGCACAACCAATAAGAAGAAATATAGGACCCGGTATTAAATTAGCTTCATTTACACTTTTTAACCCACGACTAGTGTGTACAGNAAGATTTTGATTTAGTGGGTACTGACGCTGAAAAACTATCAGCATTTCTTCGTGTTGTGGATAGGCCGAATAGTTTTGAAGCAGTTTGTTCAGCAGCACTGTTAAGAATAATGGGCGCAGACGCTAGTTCTTTCAACCAAACAGTTTTCAAAGATCTAAAAGTATCTGGTCGGACGACAGAGAAACACAGTAAGATAACATGTGCATCCAAATATGACAAAT ] [+] EMBL CD097245 [ TACAG AAGATTTTGATTTAGTGGGTACTGACGCTGAAAAACTATCAGCATTTCTTCGTGTTGTGGATAGGCCGAATAGTTTTGAAGCAGTTTGTTCAGCAGCACTGTTAAGAATAATGGGCGCAGACGCTAGTTCTTTCAACCAAACAGTTTTCAAAGATCTAAAAGTATCTGGTCGGACGACAGAGAAACACAGTAAGATAACATGTGCATCCAAATATGACAAATGTCTCAAAGAACTAACTTCTTCTTTTCCTCCTGTGTCACAGATTTGTAGATGTACTGGTCGTGTATCAGCACACACTTCAACACAAAATGTATCTNAGGCAGATGGCCTGTATTCCGCTGGATAATCATTGGAAGTGTAGCTAACGAACAGGCTAGTTTTTCCAACTTGTTTATCGGCTATTAGGATGCACTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9352#0 ACTTCTAAAATCTTTGTATTAATTAGTAATAAAGACAAACATTACGAATTGTATGCATAC 60 consensus_9352#1 ------------------------------------------------------------ consensus_9352#0 ATATACATACAAAGTGGACAACAAAAGTTACTGAACAAACAAAGGGAAAATAGGTTTTGG 120 consensus_9352#1 ------------------------------------------------------------ consensus_9352#0 AGAAAAGAAAGCAACGACTGGATGTACAAAGTCATACATATAAATAAATACATATGCAAA 180 consensus_9352#1 ------------------------------------------------------------ consensus_9352#0 AAATGTAAATCAGAACGGCGTAAAAACAATTCACAGAGTAGATATTACAGCTTTGGTTTA 240 consensus_9352#1 ------------------------------------------------------------ consensus_9352#0 GTTTATATATGTATATCTGGCATACACTTCAGGTATGACACATTAATTAATAGTTTTAAA 300 consensus_9352#1 ------------------------------------------------------------ consensus_9352#0 TAGAATAATGTACACAAATGTGATAAAATCACGACATGAGCGAACGTAAGTTATGCGAAG 360 consensus_9352#1 -----------------------------------------AATAGCCAAACATTCGGCC 19 * * * ** ** consensus_9352#0 ATTTGTATATATAAATAGGAATTATAAGTAAATGATGAGTTCAGCAGGTATTAAATGAGC 420 consensus_9352#1 TTTTCCTTATCTATAGGCTCTTCACCAACTTTAGACAATTCTAATAAACGTCCAAT-ATC 78 *** *** ** * * * * ** * * * * * *** * * consensus_9352#0 GGAAATGAGTTCATAATCACCGGATAATACGAAAAACTTGAAAGAAACAAGTATTAAGAA 480 consensus_9352#1 ATTACGTAGATCACAAGCAC-AACCAATAAGAAGAAAT--ATAGGACCCGGTATTAAATT 135 * ** *** ** *** **** *** ** * * ** * * ******* consensus_9352#0 AAGACTAGATAAAGTTAATTGAGTTTCAATCTTTTCAGTGCATAAAACAGGGAAATAGAA 540 consensus_9352#1 AGCTTCATTTACACTT--TTTAACCCACGACTAGTGTGTACAGAAGATTTTGATTTAG-- 191 * * ** * ** ** * ** * ** ** ** * ** *** consensus_9352#0 TTGTAAATTTGACATAAATACACAACCATATCATCTACCAGTATAGTTAGACAAGAAACA 600 consensus_9352#1 -TGGGTACT-GACGCTGAAAAACTATCA--GCATTTCTTCGTGTTGT-GGATAGGC--CG 244 ** * * *** * * ** * ** *** * ** * ** ** * * * consensus_9352#0 AAAAATCATTAATTACTAAATAAAGTACTATAAAATAAACATAAATGAC-TAGATAATAA 659 consensus_9352#1 AATAGTTTTGAAGCAGTTTGTTCAGCAGCACTGT-TAAGAATAATGGGCGCAGACGCTAG 303 ** * * * ** * * * ** * * *** **** * * *** ** consensus_9352#0 ATTAAGCAATTTAC--ATTTTCAGAAAGGGAGCATTATCATCAGCAACAAAATGAAAAAG 717 consensus_9352#1 TTCTTTCAACCAAACAGTTTTCAAAGATCTAAAAGTATC-----TGGTCGGACGACAGAG 358 * *** * ****** * * * * **** * ** * ** consensus_9352#0 AAATACTAAATTACAAAGTAACTTAAGAATTGATACAAAAGAAACGGCGCCAACCCTTTT 777 consensus_9352#1 AAACACA-----GTAAGATAACATGTGCATCCAAATATGACAAATG----------TCTC 403 *** ** ** **** * * ** * * * * *** * * * consensus_9352#0 TAAGAGTTTTACACTTGTTATTGTTCTCTGCTATAATACGAAATGAGTGACTGTCGGTCA 837 consensus_9352#1 AAAGAACTAACTTCTTCTTTTCCTCCTGTGTCACAGATTTGTAGATGTACTGGTCGTGTA 463 **** * *** ** * * ** ** * * * ** **** * consensus_9352#0 TTATATGGTTATTGTCAACACTATTATCATTATTAGTAGCTTTTGTGCAATCCCCATTAT 897 consensus_9352#1 TCA-GCACACACT-TCAACACAAAATGTATCTNAGGCAGATGGCCTGTATTC--CGCTGG 519 * * * * ******* * ** * ** * ** * ** * * consensus_9352#0 ATGATAATGATCCATTTGACTTTGGTTCACGCAATAATACTGGACCACCTGAATCAGCTA 957 consensus_9352#1 ATAATCATTGGAAGTGTAGCTAACGAACAGGC--TAGTTTTT--CCAACTTGTTTATCGG 575 ** ** ** * * ** * ** ** ** * * *** ** * * * consensus_9352#0 CTTTGAGACCACACCAAATAGCTAGATCGAAAACAGTCTTAAGATTTTTCTGAGTCAA 1015 consensus_9352#1 CTATTAGGATGCACTT------------------------------------------ 591 ** * ** *** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||