These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9358#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 962 fasta sequence [ATATGGTAATGCTACTATGTTAGTTTTAACTGTTGGAACTGGTGTACATGGTTTTACATTGGATCCAGCAATTGGTGAATTCATACTAACACATCCTAATATCTCTATTAAACCACGCGGAAATATTTATTCAATTAATGAAGGTTATGCAAGTCTTTGGGATAGTGCTATTACAGAATATATTCGAATGAAGAAATTTCCTGAATCAGGTAAACCTTATAGCGCACGTTATTGTGGATCTATGGTTGCTGATGTTCACCGTACATTACTTTATGGTGGAATTTTTCTTTATCCAGGTACAAAGCAATCTCCTAAAGGGAAGTTAAGATTATTATATGAATGTAATCCAATGGCATTAATTATAGAACAAGCTGGTGGTTTAGCTACAAATGGTAAATTATCTATATTAGATATTCAACCAAATCATATACATGATCGTGCACCAATATTTCTTGGTAGTAAAGATGATATTATAGAATTAATGAATATTATTAAAAAATTCTCACATTATGAATAATAAAAGAAGAAGAAGAA-GAAACAAACAATTGTCGCTTTAAATGATTATTATTGTTGCCATAGTAACTCTGAGATGATGCCGATGATTTGTAACTCAAATGGATAATTTTTGATGGAGTGTTATTCTCTAAGCTGGATGATCCATATGATCCAGATCAAAGAATAAAACTCTGATCAAAAAGCAAACAAACAAACAAACATATAATTATTCAATTGTAGATAAATTTCTTTATTTTATTCTAGTAAATAGTACAGTTTTTTTTCTTTTCATTGTTTTCTTTCTGACCAAACGGAGTTGGATACTACTGTTTTGTACTTTATTGTTCATTTTATTATGAATTATTTAGCTTTTCACATTTTGTGAATGCATGCTTATTTGTGTGTGTGTGGGTGTGTGTGGGTGTATGTGCGCGTGTTTGTGTGTGTGTTTGTTCATTTTGAATTAA] [-] EMBL CD132112 [ATATGGTAATGCTACTATGTTAGTTTTAACTGTTGGAACTGGTGTACATGGTTTTACATTGGATCCAGCAATTGGTGAATTCATACTAACACATCCTAATATCTCTATTAAACCACGCGGAAATATTTATTCAATTAATGAAGGTTATGCAAGTCTTTGGGATAGTGCTATTACAGAATATATTCGAATGAAGAAATTTCCTGAATCAGGTAAACCTTATAGCGCACGTTATTGTGGATCTATGGTTGCTGATGTTCGCCGTACATTACTTTATGGTGGAATTTTTC TTATCCAGGTACAAAGCAATCTCCTAAAGGGAAGTTAAGATTATTATATGAATGTAATCCAATGG ] [+] EMBL CD080385 [ CGAATGAAGAAATTTCCTGAATCAGGTAAACCTTATAGCGCACGTTATTGTGGATCTATGGTTGCTGATGTTCACCGTACATTACTTTATGGTGGAATTTTTCTTTATCCAGGTACAAAGCAATCTCCTAAAGGGAAGTTAAGATTATTATATGAATGTAATCCAATGGCATTAATTATAGAACAAGCTGGTGGTTTAGCTACAAATGGTAAATTATCTATATTAGATATTCAACCAAATCATATACATGATCGTGCACCAATATTTCTTGGTAGTAAAGATGATATTATAGAATTAATGAATATTATTAAAAAATTCTCACATTATGAATAATAAAAGAAGAAGAAGAA GAAACAAACAATTGTCGCTTTAAATGATTATTATTGTTGCCATAGTAACTCTGAGATGATGCCGATGATTTGTAACTCAAATGGATAATTTTTGATGGAGTGTTATTCTCTAAGCTGGATGATCCATATGATCCAGATCAAAGAATAAAACTCTGATCAAAAAGCAAACAAACAAACAAACATATAATTATTCAATTGTAGATAAATTTCTTTATTTTATTCTAGTAAATAGTACAGTTTTTTTTCTTTTCATTGTTTTCTTTCTGACCAAACGGAGTTGGATACTACTGTTTTGTACTTTATTGTTCATTNTATTATG ] [-] EMBL CD150259 [ TGCTGATGTTCACCGTACATTACTTTATGGTGGAATTTTTCTTTATCCAGGTACAAAGCAATCTCCTAAAGGGAAGTTAAGATTATTATATGAATGTAATCCAATGGCATTAATTATAGAACAAGCTGGTGGT ] [-] EMBL CD074300 [ CTGGTGGTTTAGCTACAAATGGTAAATTATCTATATTAGATATTCAACCAAATCATATACATGATCGTGCACCAATATTTCTTGGTAGTAAAGATGATATTATAGAATTAATGAATATTATTAAAAAATTCTCACATTATGAATAATAAAAGAAGAAGAAGAA GAAACAAACAATTGTCGCTTTAAATGATTATTATTGTTGCCATAGTAACTCTGAGATGATGCCGATGATTTGTAACTCAAATGGATAATTTTTGATGGAGTGTTATTCTCTAAGCTGGATGATCCATATGATCCAGATCAAAGAATAAAACTCTGATCAAAAAGCAAACAAACAAACAAACATATAATTATTCAATTGTAGATAAATTTCTTTATTTTATTCTAGTAAATAGTACAGTTTTTTTTCTTTTCATTGTTTTCTTTCTGACCAAACGGAGTTGGATACTACTGTTTTGTACTTTATTGTTCATTTTATTATGAATTATTTAGCTTTTCACATTTTGTGAATGCATGCTTATTTGTGTGTGTGTGGGTGTGTGTGGGTGTATGTGCGCGTGTTTGTGTGTGTGTTTGTTCATTTTGAATTAA] [+] EMBL CD142880 [ TAATAAAAGAAGAAGAAGAATGTTACCAACAATTGTCGCTTTAAATGATTATTATTGTTGCCATAGTAACTCTGAGATGATGCCGATGATTTGTAGCTCAAATGGATAATTTTTGATGGAGTGTTATTCTCTAAGCTGGATGATCCATATGATCCAGATCAAAGAATAAAACTCTGATCAAAAAGCAAACAAACAAACAAACATATAATTATTCGATTGTAGATAAATTTCTTTATTTTATTCTAGT ] [+] EMBL CD086372 [ GAAGAA GAAACAAACAATTGTCGCTTTAAATGATTATTATTGTTGCCATAGTAACTCTGAGATGATGCCGATGATTTGTAACTCAAATGGATAATTTTTGATGGAGTGTTATTCTCTAAGCTGGATGATCCATATGATCCAGATCAAAGAATAAAACTCTGATCAAAAAGCAAACAAACAAACAAACATATAATTATTCAATTGTAGATAAATTTCTTTATTTTATTCTAGTAAATAGTACAGTTTTTTTCCTTTTCATTGTTTTCTATCTGACCAAACGGAGTTGGATACTACTGTTTTGTACTTTATTGTTCATTTTATTATGAATTATTTAGCTTTTCACATTTTGTGAATGCA ] [-] EMBL CD135442 [ ATTTGTAGCTCAAATGGATAATTTTTGATGGAGTGTTATTCTCTAAGCTGGATGATCCATATGATCCAGATCAAAGAATAAAACTCTGATCAAAAAGCAAACAAACAGACAAACATATAATTATTCAATTGTAGATAAATTTCTTTATTTTATTCTAGTAAATAGTACAGTTTTTTTTCTTTTCATTGTTTTCTTTCTGACCAAACGGAGTTGGATACTACTGTTTTGTACTTTATTGTTCATTTTATTATGAATTATTTAGCTTTTCACATTTTGTGAATGCATGCTTATT ] consensusID : consensus_9358#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 225 fasta sequence [TTTGTAACTCAAATGGATAATTTTTGATGGAGTGTTATTCTCTAAGCTGGATGATCCATATGATCCAGATCAAAGAATAAAACTCTGATCAATAAGCAACTAACAACAACATATATTATTCAATTGTAGATAAATTCTTTATTTATCAAGTAATAGTCAGTTTTTTTCTTTCATGGTTTCTTCTGACAAAGGTTGGATACTATGGTTTGGACTTAATGTCCATCA] [+] EMBL AW146483 [TTTGTAACTCAAATGGATAATTTTTGATGGAGTGTTATTCTCTAAGCTGGATGATCCATATGATCCAGATCAAAGAATAAAACTCTGATCAATAAGCAACTAACAACAACATATATTATTCAATTGTAGATAAATTCTTTATTTATCAAGTAATAGTCAGTTTTTTTCTTTCATGGTTTCTTCTGACAAAGGTTGGATACTATGGTTTGGACTTAATGTCCATCA] [+] EMBL AW146490 [TTTGTAACTCAAATGGATAATTTTTGATGGAGTGTTATTCTCTAAGCTGGATGATCCATATGATCCAGATCAAAGAATAAAACTCTGATCAATAAGCAACTAACAACAACATATATTATTCAATTGTAGATAAATTCTTTATTTATCAAGTAATAGTCAGTTTTTTTCTTTCATGGTTTCTTCTGACAAAGGTTGGATACTATGGTTTGGACTTAATGTCCATCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9358#0 ATATGGTAATGCTACTATGTTAGTTTTAACTGTTGGAACTGGTGTACATGGTTTTACATT 60 consensus_9358#1 ------------------------------------------------------------ consensus_9358#0 GGATCCAGCAATTGGTGAATTCATACTAACACATCCTAATATCTCTATTAAACCACGCGG 120 consensus_9358#1 ------------------------------------------------------------ consensus_9358#0 AAATATTTATTCAATTAATGAAGGTTATGCAAGTCTTTGGGATAGTGCTATTACAGAATA 180 consensus_9358#1 ------------------------------------------------------------ consensus_9358#0 TATTCGAATGAAGAAATTTCCTGAATCAGGTAAACCTTATAGCGCACGTTATTGTGGATC 240 consensus_9358#1 ------------------------------------------------------------ consensus_9358#0 TATGGTTGCTGATGTTCACCGTACATTACTTTATGGTGGAATTTTTCTTTATCCAGGTAC 300 consensus_9358#1 ------------------------------------------------------------ consensus_9358#0 AAAGCAATCTCCTAAAGGGAAGTTAAGATTATTATATGAATGTAATCCAATGGCATTAAT 360 consensus_9358#1 ------------------------------------------------------------ consensus_9358#0 TATAGAACAAGCTGGTGGTTTAGCTACAAATGGTAAATTATCTATATTAGATATTCAACC 420 consensus_9358#1 ------------------------------------------------------------ consensus_9358#0 AAATCATATACATGATCGTGCACCAATATTTCTTGGTAGTAAAGATGATATTATAGAATT 480 consensus_9358#1 ------------------------------------------------------------ consensus_9358#0 AATGAATATTATTAAAAAATTCTCACATTATGAATAATAAAAGAAGAAGAAGAAGAAACA 540 consensus_9358#1 ------------------------------------------------------------ consensus_9358#0 AACAATTGTCGCTTTAAATGATTATTATTGTTGCCATAGTAACTCTGAGATGATGCCGAT 600 consensus_9358#1 ------------------------------------------------------------ consensus_9358#0 GATTTGTAACTCAAATGGATAATTTTTGATGGAGTGTTATTCTCTAAGCTGGATGATCCA 660 consensus_9358#1 --TTTGTAACTCAAATGGATAATTTTTGATGGAGTGTTATTCTCTAAGCTGGATGATCCA 58 ********************************************************** consensus_9358#0 TATGATCCAGATCAAAGAATAAAACTCTGATCAAAAAGCAAACAAACAAACAAACATATA 720 consensus_9358#1 TATGATCCAGATCAAAGAATAAAACTCTGATCAATAAGCAA-CTAACAA--CAACATATA 115 ********************************** ****** * ***** ******** consensus_9358#0 ATTATTCAATTGTAGATAAATTTCTTTATTTTATTCTAGTAAATAGTACAGTTTTTTTTC 780 consensus_9358#1 -TTATTCAATTGTAGATAAATT-CTTTATTTA--TCAAGTAA-TAGT-CAGTTTTTTTC- 168 ********************* ******** ** ***** **** ********** consensus_9358#0 TTTTCATTGTTTTCTTTCTGACCAAACGGAGTTGGATACTACTGTTTTGTACTTTATTGT 840 consensus_9358#1 -TTTCATGGTTT--CTTCTGACAAAG----GTTGGATACTA-TGGTTTGGACTTAAT-GT 219 ****** **** ******* ** *********** ** **** **** ** ** consensus_9358#0 TCATTTTATTATGAATTATTTAGCTTTTCACATTTTGTGAATGCATGCTTATTTGTGTGT 900 consensus_9358#1 CCATCA------------------------------------------------------ 225 *** consensus_9358#0 GTGTGGGTGTGTGTGGGTGTATGTGCGCGTGTTTGTGTGTGTGTTTGTTCATTTTGAATT 960 consensus_9358#1 ------------------------------------------------------------ consensus_9358#0 AA 962 consensus_9358#1 -- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||