These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9360#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 183 fasta sequence [ATATGACGCCAAGGACGATGGGCAGACTATTATTATTATTATTATCCCCAGTTAGTTATATAAGCAATGAAGCAACTAGTAGTAATATGTATAGGTGGTATAAATCTACCAATTTAATATTGGTAGTCATTAAATACAATGTATATATATTCACTAGAAAGGAAGGCCCAGGAGAGAGTGGGT] [+] EMBL CD092521 [ATATGACGCCAAGGACGATGGGCAGACTATTATTATTATTATTATCCCCAGTTAGTTATATAAGCAATGAAGCAACTAGTAGTAATATGTATAGGTGGTATAAATCTACCAATTTAATATTGGca ] [+] EMBL CD092522 [ CGCCAAGGACGATGGGCAGACTATTATTATTATTATTATCCCCAGTTAGTTATATAAGCAATGAAGCAACTAGTAGTAATATGTATAGGTGGTATAAATCTACCAATTTAATATTGGTAGTCATTAAATACAATGTATATATATTCACTAGAAAGGAAGGCCCAGTAGAGAGTGGGT] [+] EMBL CD092535 [ TATTATTATTATTATTATCCCCAGTTAGTTATATAAGCAATGAAGCAACTAGTAGTAATATGTATAGGTGGTATAAATCTACCAATTTAATATTGGTAGTCATTAAATACAATGTATATATATTCACTAGAAAGGAAGGCCCATGAGAGAGTGGGT] [+] EMBL CD123789 [ TATTATTATTATTATTATCCCCAGTTAGTTATATAAGCAATGAAGCAACTAGTAGTAATATGTATAGGTGGTATAAATCTACCAATTTAATATTGGTAGTCATTAAATACAATGTATATATATTCACTAGAAAGGAAGGCCCAGGAGAGAGTGGGT] [+] EMBL CD123821 [ TATTATTATTATTATTATCCCCAGTTAGTTATATAAGCAATGAAGCAACTAGTAGTAATATGTATAGGTGGTATAAATCTACCAATTTAATATTGGTAGTCATTAAATACAATGTATATATATTCACTAGAAAGGAAGGCCCAGGAGAGAGTGGGT] [+] EMBL CD123767 [ TATTATTATTATTATTATCCCCAGTTAGTTATATAAGCAATGAAGCAACTAGTAGTAATATGTATAGGTGGTATAAATCTACCAATTTAATACTGGTAGTCATTAAATACAATGTATATATATTCACTAGAAAGGAAGGCCCAGGAGAGAGTGGGT] [+] EMBL CD123781 [ TATTATTATTATTATTATCCCCAGTCAGTTATATAAGCAATGAAGCAACTAGTAGTAATATGTATAGGTGGTATAAATCTACCAATTTAATATTGGTAGTCATTAAATACAATGTATATATATTCACTAGAAAGGAAGGCCCAGGAGAGAGTGGGT] consensusID : consensus_9360#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 171 fasta sequence [TATTATTATTATTATTATTATTATTATTATTATCCCCAGTTAGTTATATAAGCAATGAAGCAACTAGTAGTAATATGTATAGGTGGTATAAATCTACCAATTTAATATTGGTAGTCGTTAAATACAATGTGTATATATTCACTAGAAAGGAAGGCCCAGGAGAGAGTGGGT] [+] EMBL CD092540 [TATTATTATTATTATTATTATTATTATTATTATCCCCAGTTAGTTATATAAGCAATGAAGCAACTAGTAGTAATATGTATAGGTGGTATAAATCTACCAATTTAATATTGGTAGTCGTTAAATACAATGTGTATATATTCACTAGAAAGGAAGGCCCAGGAGAGAGTGGGT] [+] EMBL CD092550 [TATTATTATTATTATTATTATTATTATTATTATCCCCAGTTAGTTATATAAGCAATGAAGCAACTAGTAGTAATATGTATAGGTGGTATAAATCTACCAATTTAATATTGGTAGTCGTTAAATACAATGTGTATATATTCACTAGAAAGGAAGGCCCAGGAGAGAGTGGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9360#0 ATATGACGCCAAGGACGATGGGCAG-ACTATTATTATTATTATTATCCCCAGTTAGTTAT 59 consensus_9360#1 -------------TATTATTATTATTATTATTATTATTATTATTATCCCCAGTTAGTTAT 47 * ** * * ******************************** consensus_9360#0 ATAAGCAATGAAGCAACTAGTAGTAATATGTATAGGTGGTATAAATCTACCAATTTAATA 119 consensus_9360#1 ATAAGCAATGAAGCAACTAGTAGTAATATGTATAGGTGGTATAAATCTACCAATTTAATA 107 ************************************************************ consensus_9360#0 TTGGTAGTCATTAAATACAATGTATATATATTCACTAGAAAGGAAGGCCCAGGAGAGAGT 179 consensus_9360#1 TTGGTAGTCGTTAAATACAATGTGTATATATTCACTAGAAAGGAAGGCCCAGGAGAGAGT 167 ********* ************* ************************************ consensus_9360#0 GGGT 183 consensus_9360#1 GGGT 171 **** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||