These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9367#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 786 fasta sequence [TAAATATCGCGTTACGGTTCAGTGATTGGTAGTCGACGCCAGACGTGATGTTTTCGTTCTAAGGAGAGTAAAGATGCAAGATGGTGTTTGTGAGCGTTTTGTTCGACGCTACTTATTATCGAAGAATTTCAAAGACACACTGAATGCATTCGAAATTGAGCATTCGAAAGAAAAAAGTAGAGGAAAATTTCAGCCATTAGACATTATCGATCAACTTCAAGAAGCGATCTACGATTCTAATTTAACTCAGTTGACCAATCAGTGGAATTTCTTAGAAAATACACTATTTCACCGGTTGTCAGGTGATAAACAACTTGCTGCCAATGAGCTCAAAGTGCATGTTTTTCGTACATACTTAGTGCAGGCTAAAATAAAGAAACGTCAAGCAAAAATGACTGAGTTTTTCGAATCACTTTCTTCGCAGTTTTCCTTTGGAAAAGAGGAATGGCAAAGTTGGTGTGCTTTGCCTTACGCAGCGGATCCAAAAATGCATCCAGAGTTTTTTATGTATTTTACAAAGTCGTGGATGGATGTGTTGATTCTATCACTAACAAACTTCCTCTGTTTGATAAATTACTCTGAAAGTNACCAAAGCTGAATATTTTTTGAGATGGANTTTCCGAACCGGAAGAATNATTCTNGCCCCANCNAAAAGAACCCCAACTCNGGAAANTCAATTCCCNTTTNGGGNAGCNCCTTGATTACTTTAATGAACTNGGGAACTNTCCNANCCAAATTCNNAACTTCAGTGATCTTTTCAAATGTCCNATANTGTNAAACAAGTGT] [+] EMBL CD159423 [TAAATATCGCGTTACGGTTCAGTGATTGGTAGTCGACGCCAGACGTGATGTTTTCGTTCTAAGGAGAGTAAAGATGCAAGATGGTGTTTGTGAGCGTTTTGTTCGACGCTACTTATTATCGAAGAATTTCAAAGACACACTGAATGCATTCGAAATTGAGCATTCGAAAGAAAAAAGTAGAGGAAAATTTCAGCCATTAGACATTATCGATCAACTTCAAGAAGCGATCTACGATTCTAATTTAACTCAGTTGACCAATCAGTGGAATTTCTTAGAAAATACACTATCTCACCGGTTGTCAGGTGATAAACAACTTGCTGCCAATGAGCTCAAAGTGCATGTTTTTCGTACATACTTAGTGCAGGCTAAAAT ] [-] EMBL CD159088 [ AAATATCGCGTTACGGTTCAGTGATTGGTAGTCGACGCCAGACGTGATGTTTTCGTTCTAAGGAGAGTAAAGATGCAAGATGGTGTTTGTGAGCGTTCTGTTCGACGCTACTTATTATCGAAGAATTTCAAAGACACACTGAATGCATTCGAAATTGAGCATTCGAAAGAAAAAAGTAGAGGAAAATTTCAGCCATTAGACATTATCGATCAACTTCAAGAAGCGATCTACGATTCTAATTTAACTCAGTTGACCAATCAGTGGAATTTCTTAGAAAATACACTATTTCACCGGTTGTCAGGTGATAAACAACTTGCTGCCAATGAGCTCAAAGTGCATGTTTTTCGTACATACTTAGTGCAGGCTAAAATA ] [+] EMBL AI976896 [ GATTGGTAGTCGACGCCAGACGTGATGTTTTCGTTCTAAGGAGAGTAAAGATGCAAGATGGTGTTTGTGAGCGTTTTGTTCGACGCTACTTATTATCGAAGAATTTCAAAGACACACTGAATGCATTCGAAATTGAGCATTCGAAAGAAAAAAGTAGAGGAAAATTTCAGCCATTAGACATTATCGATCAACTTCAAGAAGCGATCTACGATTCTAATTTAACTCAGTTGACCAATCAGTGGAATTTCTTAGAAAATATACTATTTCACCGGTTGTCAGGTGATAAACAACTTGCTGCCAATGAGCTCAAAGTGCATGTTTTTCGTACATACTTAGTGCAGGCTAAAATAAAGAAACGTCAAGCAAAAATGACTGAGTTTTTCGAATCACTTTCTTCGCAGTTTTCCTTTGGAAAAGAGGAATGGCAAAGTTGGTGTGCTTTGCCTTACGCAGCGGATCCAAAAATGCATCCAGAGTTTTTTATGTATTTTACAAAGTCGTGGATGGATGTGTTGATTCTATCACTA ] [+] EMBL AW466243 [ TCCAAAAATGCATCCAGAGTTTTTTATGTATTTTACAAAGTCGTGGATGGATGTGTTGATTCTATCACTAACAAACTTCCTCTGTTTGATAAATTACTCTGAAAGTNACCAAAGCTGAATATTTTTTGAGATGGANTTTCCGAACCGGAAGAATNATTCTNGCCCCANCNAAAAGAACCCCAACTCNGGAAANTCAATTCCCNTTTNGGGNAGCNCCTTGATTACTTTAATGAACTNGGGAACTNTCCNANCCAAATTCNNAACTTCAGTGATCTTTTCAAATGTCCNATANTGTNAAACAAGTGT] consensusID : consensus_9367#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 785 fasta sequence [TTGGCACGAGGCGCAAAGAAAAAGTAGAGGAAAATTTCAGCCATTAGTACATTATCGATCAACTTCAAGAAGCGATCTACGATTCTAATTTAACTCAGTTGACCAATCAGTGGAATTTCTTAGAAAATACACTATTTCACCGGTTGTCAGGTGATAAACAACTTGCTGCCAATGAGCTCAAAGTGCATGTTTTTCGTACATACTTAGTGCAGGCTAAAATAAAGAAACGTCAAGCAAAAATGACTGAGTTTTTCGAATCACTTTCTTCGCAGTTTTCCTTTGGAAAAGAGGAATGGCAAAGTTGGTGTGCTTTGCCTTACGCAGCGGATCCAAAAATGCATCCAGAGTTTTTTATGTATTTTACAAAGTC-GTGGAT-GGATGTGTTGATTCTATCACTAACAAACTTCCTCTGTTTGATAAATTATTCTGAAAGTAACCAAAGCAGAGTATTTTTTGAGATGGAGTTTCCGAACCGGAAGAGTAAATCAAGCACAAACGAAAAGACACCGACGTCAGGAAATCAATTGCCATTTGGGGAGCTCCTTGATGACTTTAATGAACTGGGAACTATCCGAACAAATTCAAAACTTCAGTGATCATTTCAAATGTCCAATAGTGTGAAACAAGTGTCGTTTGTGTTAGTAACCCATATGTATCTAGCGTAATTCTACATGTGACTGACTACTGAACATTTTCAACTACATTTCTGAACAATCATCAACGTTTTGTATTTGACAGAAAAAATTTTATCTGTATAGTAGCTAAATACCTATCTTATAANNTGT] [+] EMBL CD079587 [TTGGCACGAGGCGCAAAGAAAAAGTAGAGGAAAATTTCAGCCATTAGTACATTATCGATCAACTTCAAGAAGCGATCTACGATTCTAATTTAACTCAGTTGACCAATCAGTGGAATTTCTTAGAAAATACACTATTTCACCGGTTGTCAGGTGATAAACAACTTGCTGCCAATGAGCTCAAAGTGCATGTTTTTCGTACATACTTAGTGCAGGCTAAAATAAAGAAACGTCAAGCAAAAATGACTGAGTTTTTCGAATCACTTTCTTCGCAGTTTTCCTTTGGAAAAGAGGAATGGCAAAGTTGGTGTGCTTTGCCTTACGCAGCGGATCCAAAAATGCATCCAGAGTTTTTTATGTATTTTACAAAGTC GTGGAT GGATGTGTTGATTCTATCACTAACAAACTTCCTCTGTTTGATAAATTATTCTGAAAGTAACCAAAGCAGAGTATTTTTTGAGATGGAGTTTCCGAACCGGAAGAGTAAATCAAGCACAAACGAAAAGACACCGACGTCAGGAAATCAATTGCCATTTGGGGAGCTCCTTGATGACTTTAATGAACTGGGAACTATCCGAACAAATTCAAAACTTCAGTGATCATTTCAAATGTCCAATAGTGTGAAACAAGTGTCGTTTGTGTTAGTAACCCATATGTATCTAGCGTAATTCTACATGTGACTGACTACTGAACATTNTCAACTACATTTCTGAACAATCATCAACGTTTTGTATTTGACAG AAAAATTNTATCTGTATAGTAGCTAAATACCTTTCTTATAANNTG ] [-] EMBL CD073848 [ ATTTCACCGGTTGTCAGGTGATAAACAACTTGCTGCCAATGAGCTCAAAGTGCATGTTTTTCGTACATATTTAGTGCAGGCTAAAATAAAGAAACGTCAAGCAAAAATGACTGAGTTTTTAGAATCACTTTCTTCGCAGTTTTCCTTTGGAAAAGAGGAATGGCAAAGTTGGTGTGCTTTGCCTTACGCAGCGGATCCAAAAATGCATCCAGAGTTTTTTATGTATTTTACAAAGTC GTGGAT GGATGTGTTGATTCTATCACTAACAAACTTCCTCTGTTTGATAAATTATTCTGAAAGTAACCAAAGCAGAGTATTTTTTGAGATGGAGTTTCCGAACCGGAAGAGTAAATCAAGCACAAACGAAAAGACACCGACGTCAGGAAATCAATTGCCATTTGGGGAGCTCCTTGATGACTTTAATGAACTGGGAACTATCCGAACAAATTCAAAACTTCAGTGATCATTTCAAATGTCCAATAGTGTGAAACAAGTGTCGTTTGTGTTAGTAACCCATATGTATCTAGCGTAATTCAACATGTGACTGACTACTGAACATTTTCAACTACATTTTTGAACAATCATCAACGTTTTGTATTTGACAGAAAAAATTTTATCTGGATAGTAGCTAAATACAAATCTTATAAttgat] [+] EMBL CD134256 [ gatgcAAGTCGGTTACTAGGGAGTGTTG TTCTAT ACTAACAAACTTCCTCTGTTTGATAAATTATTCTGAAAGT ACCAAAGCAGAGTATTTTTTGAGATGGAGTTTCCG ACCGGAAGAGT AATCAAGCTCAAACGAAAAGACACCGACGTCAGGAAATCAATTGCCATTTGGGGAGCTCCTTGATGACTTTAATGAACTGGGAACTATCCGAACAAATTCAAAACTTCAGTGATCATTTCAAATGTCCAATAGTGTGAAACAAGTGTCGTTTGTGTTAGTAACCCATATGTATCTAGCGTAATTCTACATATGACTGACTACTGAACATTTTCAACTACATTTCTGAACAATCATCAACGTTTTGTATTTGACAGAAAAAATTTTATCTGTATAGTAGCTAAATACCTCTCTTATA ] [+] EMBL SM669 [ AACAAACTTCCTCTGTTTGATAAATTATTCTGAAAGTAACCAAAGCAGAGTTTTT ] consensusID : consensus_9367#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 602 fasta sequence [TGTTACTAGCACAATCAATTATAAGAAAGGTATTTAGCTACTATACAGATAAAATTTTTTCTGTCAAATACAAAACGTTGATGATTGTTCAGAAATGTAGTTGAAAATGTTCAGTAGTCAGTCATATGTAGAATTACGCTAGATACATATGGGTTACTAACACAAACGACACTTGTTTCACACTATTGGACATTTGAAATGATCACTGAAGTTTTGAATTTGTTCGGATAGTTCCCAGTTCATTAAAGTCATCAAGGAGCTCCCCAAATGGCAATTGATTTCCTGACGTCGGTGTCTTTTCGTTTGTGCTTGACTATGGAAATAAAATATAATATTTTTTCCAAAAGAAAATGGGATTCTTAGCAGATTTTGATAAACTAACATAATACATGGCACATGATACTTTTTTCACCATCACATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATGTATATATATATATATATATATATATATATATATATATAACGGTGTAAAGGATTGCAACATCGAACTGAATGCTAAAGGTGTATGAGCCTAGTGTTTGTTTCTCTATTCGTCTCACTACTAATCTTAAAGATGGAAAGATACTTATATTTC] [+] EMBL CD134260 [TGTTACTAGCACAATCAATTATAAGAAAGGTATTTAGCTACTATACAGATAAAATTTTTTCTGTCAAATACAAAACGTTGATGATTGTTCAGAAATGTAGTTGAAAATGTTCAGTAGTCAGTCATATGTAGAATTACGCTAGATACATATGGGTTACTAACACAAACGACACTTGTTTCACACTATTGGACATTTGAAATGATCACTGAAGTTTTGAATTTGTTCGGATAGTTCCCAGTTCATTAAAGTCATCAAGGAGCTCCCCAAATGGCAATTGATTTCCTGACGTCGGTGTCTTTTCGTTTGTGCTTGACTATGGAAATAAAATATAATATTTTTTCCAAAAGAAAATGGGATTCTTAGCAGATTTTGATAAACTAACATAATACATGGCACATGATACTTTTTTCACCATCACATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATGTATATATATATATATATATATATATATATATATATATAACGGTGTAAAGGATTGCAACATCGAACTGAATGCTAAAGGTGTATGAGCCTAGTGTTTGTTTCTCTATTCGTCTCACTACTAATCTTAAAGATGGAAAGATACTTATATTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9367#0 TAAATATCGCGTTACGGTTCAGTGATTGGTAGTCGACGCCAGACGTGATGTTTTCGTTCT 60 consensus_9367#1 ------------------------------------------------------------ consensus_9367#2 ------------------------------------------------------------ consensus_9367#0 AAGGAGAGTAAAGATGCAAGATGGTGTTTGTGAGCGTTTTGTTCGACGCTACTTATTATC 120 consensus_9367#1 ------------------------------------------------------------ consensus_9367#2 ------------------------------------------------------------ consensus_9367#0 GAAGAATTTCAAAGACACACTGAATGCATTCGAAATTGAGCATTCGAAAGAAAAAAGTAG 180 consensus_9367#1 -----------------------------TTGGCACGAGGC----GCAAAGAAAAAGTAG 27 consensus_9367#2 ------------------------TGTTACTAGCAC-AATCAATTATAAGAAAGGTATTT 35 * * ** ** * consensus_9367#0 AGGAAAATTTCAGCCATTAG-ACATTATCGATCAACTTCAAGAAGCGATCTACGATTCTA 239 consensus_9367#1 AGGAAAATTTCAGCCATTAGTACATTATCGATCAACTTCAAGAAGCGATCTACGATTCTA 87 consensus_9367#2 AGCTACTATACAGA---TAAAATTTTTTCTGTCAAATACAAAACG---TTGATGATTGTT 89 ** * * *** ** * ** ** **** * *** * * * * **** * consensus_9367#0 ATTTAACTCAGTTGACCAATCAGTGGAATTTCTTAGAAAATACACTATTTCACCGGTTGT 299 consensus_9367#1 ATTTAACTCAGTTGACCAATCAGTGGAATTTCTTAGAAAATACACTATTTCACCGGTTGT 147 consensus_9367#2 CAGAAATGTAGTTGAA-AAT--GTTCAGTAGTCAGTCATATGTAGAATTACGCTAGATAC 146 ** ****** *** ** * * * ** * *** * * * * consensus_9367#0 CAGGTGATAAACAACTTGCTGCCAATGAGCTCAAAGTGCATGTTTTTCGTACATACTTAG 359 consensus_9367#1 CAGGTGATAAACAACTTGCTGCCAATGAGCTCAAAGTGCATGTTTTTCGTACATACTTAG 207 consensus_9367#2 ATATGGGTTACTAAC-----ACAAACGA-CACTTGTTTCACACTATTGG-ACATTTGAAA 199 * * * *** * ** ** * * * ** * ** * **** * consensus_9367#0 TGCAGGCTAAAATAAAGAAACGTCAAGCAAAAATGACTGAGTTTTTCGAATCACTTTCTT 419 consensus_9367#1 TGCAGGCTAAAATAAAGAAACGTCAAGCAAAAATGACTGAGTTTTTCGAATCACTTTCTT 267 consensus_9367#2 TGATCACTGAAGTTTTGAAT--TTGTTCGGATAGTTCCCAGTTCATTAA---AGTCATCA 254 ** ** ** * *** * * * * * **** * * * * consensus_9367#0 CGCAGTTTTCCTTTGGAAAAGAGGAATGGCAAAGTTGGTGTGCTTTGCCTTACGCAGCGG 479 consensus_9367#1 CGCAGTTTTCCTTTGGAAAAGAGGAATGGCAAAGTTGGTGTGCTTTGCCTTACGCAGCGG 327 consensus_9367#2 AGGAGCTCCCCAAATGGCAATTGATTTCCTGACGTCGGTGTCTTTTCGTTTGTGC----- 309 * ** * ** * ** * * * ** ***** *** ** ** consensus_9367#0 ATCCAAAAATGCATCCAGAGTTTTTTATGTATTTTACAAAGTCGTGGATGGATGTGTTGA 539 consensus_9367#1 ATCCAAAAATGCATCCAGAGTTTTTTATGTATTTTACAAAGTCGTGGATGGATGTGTTGA 387 consensus_9367#2 --TTGACTATGGAAATAAAATATAATATTTTTTCCAAAAGAAAATGGGATTCTTAGCAGA 367 * *** * * * * * *** * ** * ** *** * * ** consensus_9367#0 TTCTATCACTAACAAACTTCCTCTGTTTGATAAATTACTCTGAAAGTNACCAAAGCTGAA 599 consensus_9367#1 TTCTATCACTAACAAACTTCCTCTGTTTGATAAATTATTCTGAAAGTAACCAAAGCAGAG 447 consensus_9367#2 TTTTGATA--AACTAACATAATACATGGCACATGATACTTTTTTCACCATCACATTCTCT 425 ** * * *** *** * * * * * ** * * * ** * consensus_9367#0 TATTTTTTGAGATGGANTTTCCGAACCGGAAGAATNATTCTNGCCCCANCNAAAAGAACC 659 consensus_9367#1 TATTTTTTGAGATGGAGTTTCCGAACCGGAAGAGTAAATCAAGCACAAACGAAAAGA-CA 506 consensus_9367#2 CTCTCTCTCTCTCTCTCTCTCTCTATGTATATATATATATATATATATATATATATATAT 485 * * * * ** * * * * * * * consensus_9367#0 CCAACTCNGGAAANTCAATTCCCNTTTNGGGNAGCNCCTTGATTACTTTAATGAACTNGG 719 consensus_9367#1 CCGACGTCAGGAAATCAATTGCCATTTGGGGA-GCTCCTTGATGACTTTAATGAACTGGG 565 consensus_9367#2 ATATAACGGTGTAAAGGATTGCAACATCGAACTGAATGCTAAAGGTGT--ATGAGCCTAG 543 * *** * * * * * * * **** * * consensus_9367#0 GAACTNTCCNANCCAAATTCNNAACTTCAGTGATCTTTTCAAATGTCCNATANTGTNAAA 779 consensus_9367#1 -AACTATCCGAAC-AAATTCAAAACTTCAGTGATCATTTCAAATGTCCAATAGTGTGAAA 623 consensus_9367#2 TGTTTGTTTCTCT---ATTCGTCTCACTACTAATCTTAAAGATGGAAAGATACTTATATT 600 * * **** * * * *** * * * *** * * consensus_9367#0 CAAGTGT----------------------------------------------------- 786 consensus_9367#1 CAAGTGTCGTTTGTGTTAGTAACCCATATGTATCTAGCGTAATTCTACATGTGACTGACT 683 consensus_9367#2 TC---------------------------------------------------------- 602 consensus_9367#0 ------------------------------------------------------------ consensus_9367#1 ACTGAACATTTTCAACTACATTTCTGAACAATCATCAACGTTTTGTATTTGACAGAAAAA 743 consensus_9367#2 ------------------------------------------------------------ consensus_9367#0 ------------------------------------------ consensus_9367#1 ATTTTATCTGTATAGTAGCTAAATACCTATCTTATAANNTGT 785 consensus_9367#2 ------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||