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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9368#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 800 fasta sequence
[TTGGATGAATCATTANAATTGAATGATTCAAGGAACCGATTAGAAGGTCACCTTCTTGCAGAAGTTATCGGTGACCAANAACCAAGTCAATACAATCAATCATTATTGAACATTGTACANAATCAACGTGATCGATTTCGAACACGAGCTGAAGAATTAGAACAGAATGAAATAAATTTACGCCAACAGTTGGTATCACTTCAACGTGAAGTTGAATCAGTACGTGCTGATAACGTTAAACTGTACGAGAAAATACGTTTCTTACACTCTTATGGTAATCCCGTAATACAAAATCGACAAAATAATTTATCTAATCAGCATCCTTCATCACCGGTGACAACATCATTGTCTCCATCGCCTTTTCAAAATCATGAGTCGAATGATGCGACTATCATTAAATATTCACAAGTTTATGAAGCTCAGTTAAATCCTTTCAATCAATTTAGTCGATATGAGAAACAACGAGTGTATAAAAAGTTACAACCATATGAAAAACCGATGTTACATTTGTGTAATACTACACCGTGAGAATATAAAGGCATCATAAATAGTATGGTTATATTCATTATTATTATGTGATACTGGCTTTCTTTTTAAATGAAAAATGTCCACGTGGTTTGTGTGTGTGTGTATATTGGGTTTCTTTTGTTTTTTAAGAAAAAATTAATTTTAGAAAATTTATTTTGCATTAGACATGTATGTACTTTATTGGATAAAACTTTTTGTTCAAAATAAAACTGATTTATACTTGGAAAAAAAAAGAAAAAAAAAAAANNNACATGCCATGCAGCTGCATTACC]
[-] EMBL CD154772 [TTGGATGAATCATTANAATTGAATGATTCAAGGAACCGATTAGAAGGTCACCTTCTTGCAGAAGTTATCGGTGACCAANAACCAAGTCAATACAATCAATCATTATTGAACATTGTACANAATCAACGTGATCGATTTCGAACACGAGCTGAAGAATTAGAACAGAATGAAATAAATTTACGCCAACAGTTGGTATCACTTCAACGTGAAGTTGAATCAGTACGTGCTGATAACGTTAAACTGTACGAGAAAATACGTTTCTTACACTCTTATGGTAATCCCGTAATACAAAATCGACAAAATAATTTATCTAATCAGCATCCTTCATCACCGGTGACAACATCATTGTCTCCATCGCCTTTTCAAAATCATGAGTCGAATGATGCGACTATCATTAAATATTCACAAGTTTATGAAGCTCAGTTAAATCCTTTCAATCAATTTAGTCGATATGAGAAACAACGAGTGTATAAAAAGTTACAACCATATGAAAAACCGATGTTACATTTGTGTAATACTACACCGTGAGAATATAAAGGCATCATAAATAGTATGGTTATATTCATTATTATTATGTGATACTGGCTTTCTTTTT ]
[-] EMBL CD157567 [ CAACAGTTGGTATCACTTCAACGTGAAGTTGAATCAGTACGTGCTGATAACGTTAAACTGTACGAGAAAATACGTTTCTTACACTCTTA ]
[-] EMBL CD157561 [ TGGTATCACTTCAACGTGAAGTTGAATCAGTACGTGCTGATAACGTTAAACTGTACGAGAAAATACGTTTCTTACACTCTTA ]
[+] EMBL CD137710 [ AACGTGAAGTTGAATCAGTACGTGCTGATAACGTTAAACTGTACGAGAAAATACGTTTCTTACACTCTTATGGTAATCCCGTAATACAAAATCGACAAAATAATTTATCTAATCAGCATCCTTCATCACCGGTGACAACATCATTGTCTCCATCGCCTTTTCAAAATCATGAGTCGAATGATGCGACTATCATTAAATATTCACAAGTTTATGAAGCTCAGTTAAATCCTTTCAATCAA ]
[-] EMBL CD076252 [ caaGTGTAATACTACCCTGTGAGAATATAAAGGCATCATAAATAGTATGGTTATATTCATTATTATTATGTGATACTGGCTTTCTTTTTAAATGAAAAATGTCCACGTGGTTTGTGTGTGTGTGTATATTGGGTTTCTTTTGTTTTTTAAGAAAAAATTAATTTTAGAAAATTTATTTTGCATTAGACATGTATGTACTTTATTGGATAAAACTTTTTGTTCAAAATAAAACTGAT ]
[-] EMBL AW017262 [ aaAGGATGGTTATATTCATTATTATTATGTGAAACTGGCTTTCTTTTTAAATGAAAAATGTCCACGGGGTTTGTGTGGGGGAAAAAATTGGGGTTCTTTTGTTTTTTAAGAAAAAATTAATTTTAGAAAATTTATTTTGCATTAGACATGTATGGACTTTATTGGATAAAACTTTTTGTTCAAAATAAAACTGATTTATACTTGGAAAAAAAAAGAAAAAAAAAAAANNNACATGCCATGCAGCTGCATTACC]
consensusID : consensus_9368#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 767 fasta sequence
[CTCGAGGCCANAATTCGGCACGAGGCGTTTGCAGACAAATTTGGATGAATCATTAAAATTGAATGATTCAAGGAACCGATTAGAAGGTCACCTTCTTGCAGAAGTTATCGGTGACCAAAAACCAAGTCAATACAATCAATCATTATTGAACATTGTACAAAATCAACGTGATCGATTTCGAACACGAGCTGAAGAATTAGAACAGAATGAAATAAATTTACGCCAACAGTTGGTATCACTTCAACGTGAAGTTGAATCAGTACGTGCTGATAACGTTAAACTGTACGAGAAAATACGTTTCTTACACTCTTATGGTAATCCCGTAATACAAAATCGACAAAATAATTTATCTAATCAGCATCCTTCATCACCGGTGACAACATCATTGTCTCCATCGCCTTTTCAAAATCATGAGTCGAATGATGCGACTATCATTAAATATTCACAAGTTTATGAAGCTCAGTTAAATCCTTTCAATCAATTTAGTCGATATGAGAAACAACGAGTGTATAAAAAGTTACAACCATATGAAAAACTGATGTTACATTTGGGACGTTTTGTTAGTTCCGATCGTAGACTTCGCTTGGGTGTATTTTTATATGCAATATTTTTACATTTATTCATATTTATTGCACTGTATAAAGCAGCTCATTTNCAGCATAGTGCCTTAGAAACTGAAGCCAATTGTCATTCTCGCTTTGAAAAACATATGCGAGAAGTTCATAATCAAGATGGTGGAAATCTTTAACATTTCCTTTTTATACTTT]
[+] EMBL CD082657 [CTCGAGGCCANAATTCGGCACGAGGCGTTTGCAGACAAATTTGGATGAATCATTAAAATTGAATGATTCAAGGAACCGATTAGAAGGTCACCTTCTTGCAGAAGTTATCGGTGACCAAAAACCAAGTCAATACAATCAATCATTATTGAACATTGTACAAAATCAACGTGATCGATTTCGAACACGAGCTGAAGAATTAGAACAGAATGAAATAAATTTACGCCAACAGTTGGTATCACTTCAACGTGAAGTTGAATCAGTACGTGCTGATAACGTTAAACTGTACGAGAAAATACGTTTCTTACACTCTTATGGTAATCCCGTAATACAAAATCGACAAAATAATTTATCTAATCAGCATCCTTCATCACCGGTGACAACATCATTGTCTCCATCGCCTTTTCAAAATCATGAGTCGAATGATGCGACTATCATTAAATATTCACAAGTTTATGAAGCTCAGTTAAATCCTTTCAATCAATTTAGTCGATATGAGAAACAACGAGTGTATAAAAAGTTACAACCATATGAAAAACTGATGTTACATTTGGGACGTTTTGTTAGTTCCGATCGTAGACTTCGCTTGGGTGTATTTTTATATGCAATATTTTTACATTTATTCATATTTATTGCACTGTATAAAGCAGCTCATTTNCAGCATAGTGCCTTAGAAACTGAAGCCAAT ]
[-] EMBL CD076253 [ CTTTCAATCAATTTAGTCGATATGAGAAACAACGAGTGTATAAAAAGTTACAACCATATGAAAAACTGATGTTACATTTGGGACGTTTTGTTAGTTCCGATCGTAGACTTCGCTTGGGTGTATTTTTATATGCAATATTTTTACATTTATTCATATTTATTGCACTGTATAAAGCAGCTCATTTCCAGCATAGTGCCTTAGAAACTGAAGCCAATTGTCATTCTCGCTTTGAAAAACATATGCGAGAAGTTCATAATCAAGATGGTGGAAATCTTTAACATTTCCTTTTTATACTTT]
consensusID : consensus_9368#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 438 fasta sequence
[GTATCCTGCTCCCGGCCGTCATGGCGGCCGTTGGAATTCGATTCGGCGGGGTTGTGTCTGGCAGACAAATTTGGATGAATCATTAAAATTGAATGATTCAAGGAACCGATTAGAAGGTCACCTTCTTGCAGAAGTTATCGGTGACCAAAAACCAAGTCAATGTAAATATCAATAGTTAATAATATTATCGCTAGAAAATTTCATGTTATTTTATTTGTATTGTAAAGATCCTTTTTCCCTATTTATTTGTACTATTTATAATAACAACTTTTGGATAGTTAGATTGTAAATGTCATGATAATGAGTTTATTGTTTCCCACCTACTTATTACTAATCGGTTGGTGACTTAGTAGATCTTTAACGAGTGTTGTGGTTGAGATGTTTGGCCAATCGTTCTGTACTTTAAAACCTGATATTTACTGGTTTAAGAGTCTGTCG]
[+] EMBL CD187663 [GTATCCTGCTCCCGGCCGTCATGGCGGCCGTTGGAATTCGATTCGGCGGGGTTGTGTCTGGCAGACAAATTTGGATGAATCATTAAAATTGAATGATTCAAGGAACCGATTAGAAGGTCACCTTCTTGCAGAAGTTATCGGTGACCAAAAACCAAGTCAATGTAAATATCAATAGTTAATAATATTATCGCTAGAAAATTTCATGTTATTTTATTTGTATTGTAAAGATCCTTTTTCCCTATTTATTTGTACTATTTATAATAACAACTTTTGGATAGTTAGATTGTAAATGTCATGATAATGAGTTTATTGTTTCCCACCTACTTATTACTAATCGGTTGGTGACTTAGTAGATCTTTAACGAGTGTTGTGGTTGAGATGTTTGGCCAATCGTTCTGTACTTTAAAACCTGATATTTACTGGTTTAAGAGTCTGTCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9368#0 ------------------------------------------------------------
consensus_9368#1 ----------------------------CTCGAGGCCANAATTCGGCACGA--GGCGTTT 30
consensus_9368#2 GTATCCTGCTCCCGGCCGTCATGGCGGCCGTTGGAATTCGATTCGGCGGGGTTGTGTCTG 60
consensus_9368#0 ----------TTGGATGAATCATTANAATTGAATGATTCAAGGAACCGATTAGAAGGTCA 50
consensus_9368#1 GCAGACAAATTTGGATGAATCATTAAAATTGAATGATTCAAGGAACCGATTAGAAGGTCA 90
consensus_9368#2 GCAGACAAATTTGGATGAATCATTAAAATTGAATGATTCAAGGAACCGATTAGAAGGTCA 120
*************** **********************************
consensus_9368#0 CCTTCTTGCAGAAGTTATCGGTGACCAANAACCAAGTCAATACAATCAATCATTATTGAA 110
consensus_9368#1 CCTTCTTGCAGAAGTTATCGGTGACCAAAAACCAAGTCAATACAATCAATCATTATTGAA 150
consensus_9368#2 CCTTCTTGCAGAAGTTATCGGTGACCAAAAACCAAGTCAATGTAAATATCAATAGTTAA- 179
**************************** ************ ** * ** ** *
consensus_9368#0 CATTGTACANAATCAACGTGATCGATTTCGAACACGAGCTGAAGAATTAGAACAGAATGA 170
consensus_9368#1 CATTGTACAAAATCAACGTGATCGATTTCGAACACGAGCTGAAGAATTAGAACAGAATGA 210
consensus_9368#2 -------TAATATTATCGCTAGAAAATTT-----CATGTTATTTTATTTGTATTGTA-AA 226
* ** * ** * * ** * * * *** * * * * *
consensus_9368#0 AATAAATTTACGCCAACAGTTGGTATCACTT-CAACGTGAAGTTGAATCAGTACGTGCTG 229
consensus_9368#1 AATAAATTTACGCCAACAGTTGGTATCACTT-CAACGTGAAGTTGAATCAGTACGTGCTG 269
consensus_9368#2 GATCCTTTTTCCCTATTTATTTGTACTATTTATAATAACAACTTTTGGATAGTTAGATTG 286
** *** * * * ** *** * ** ** ** ** **
consensus_9368#0 ATAACGTTAAACTGTACGAGAAAATACGTTTCTTACACTCTTATGGTAATCCCGTAATAC 289
consensus_9368#1 ATAACGTTAAACTGTACGAGAAAATACGTTTCTTACACTCTTATGGTAATCCCGTAATAC 329
consensus_9368#2 TAAATGTCATGATA-ATGAGTTTAT-TGTTTCCCACCTACTTATTACTAATCGGT--TGG 342
** ** * * * *** ** ***** ** ***** * * ** *
consensus_9368#0 AAAATCGACAAAATAATTTATCTAATCAGCATCCT--TCATCACCGGTGACAACATCATT 347
consensus_9368#1 AAAATCGACAAAATAATTTATCTAATCAGCATCCT--TCATCACCGGTGACAACATCATT 387
consensus_9368#2 TGACTTAGTAGA------TCTTTAACGAGTGTTGTGGTTGAGATGTTTGGCCA-ATCGTT 395
* * * * * * *** ** * * * * ** * * *** **
consensus_9368#0 GTCTCCATCGCCTTTTCAAAATCATGAGTCGAATGATGCGACTATCATTAAATATTCACA 407
consensus_9368#1 GTCTCCATCGCCTTTTCAAAATCATGAGTCGAATGATGCGACTATCATTAAATATTCACA 447
consensus_9368#2 CTGTACTTTAAAACCTGATATTTACTGGTTTAAGAGTCTGTCG----------------- 438
* * * * * * * * * ** ** * * *
consensus_9368#0 AGTTTATGAAGCTCAGTTAAATCCTTTCAATCAATTTAGTCGATATGAGAAACAACGAGT 467
consensus_9368#1 AGTTTATGAAGCTCAGTTAAATCCTTTCAATCAATTTAGTCGATATGAGAAACAACGAGT 507
consensus_9368#2 ------------------------------------------------------------
consensus_9368#0 GTATAAAAAGTTACAACCATATGAAAAACCGATGTTACATTTGTGTAATACTACACCGTG 527
consensus_9368#1 GTATAAAAAGTTACAACCATATGAAAAACTGATGTTACATTTGGGACGTTTTGTTAGTTC 567
consensus_9368#2 ------------------------------------------------------------
consensus_9368#0 AGAATATAAAGGCATCATAAATAGTATGGTTATATTCATTATTATTATGTGATACTGGCT 587
consensus_9368#1 CGATCGTAGACTTCGCTTGGGT-GTATTTTTATATGCAATATTTTTACATT-TATTCATA 625
consensus_9368#2 ------------------------------------------------------------
consensus_9368#0 TTCTTTTTAAATGAAAAATGTCCACGTGGTTTGTGT-GTGTGTGTATATTGGGTTTCTTT 646
consensus_9368#1 TTTATTGCACTGTATAAAGCAGCTCATTTNCAGCATAGTGCCTTAGAAACTGAAGCCAAT 685
consensus_9368#2 ------------------------------------------------------------
consensus_9368#0 TGTTTTTTAAGAAAAAATTAATTTTAGAAAATTTATTTTGCATTAGACATGTATGTACTT 706
consensus_9368#1 TGTCATTC----------TCGCTTTGAAAAACATATGC-------GAGAAGTTCATAATC 728
consensus_9368#2 ------------------------------------------------------------
consensus_9368#0 TATTGGATAAAACTTTTTGTTCAAAATAAAACTGATTTATACTTGGAAAAAAAAAGAAAA 766
consensus_9368#1 AAGATGGTGGAAATCTTT------AACATTTCCTTTTTATACTTT--------------- 767
consensus_9368#2 ------------------------------------------------------------
consensus_9368#0 AAAAAAAANNNACATGCCATGCAGCTGCATTACC 800
consensus_9368#1 ----------------------------------
consensus_9368#2 ----------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||