These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9371#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 733 fasta sequence [TTGTCCATTTATGCATGCCTTCAAAAAGAATGTAACTGGTCAACCAAACCACTTTGAAGTGCGACTACTTTGACTTCAGAATTTCCCTGAGTAGCGGCACCAATGGCTTTCAAAGTATCTTTTTTAACTTCATAACTGGGATGGTGTAAAAGCTGTAACAGTGTTTCGAAACCATTTTTGGAGAAAATCCTTGCATTGTCAATCTGGTGCAGGTAGTAAGACAGATCTTCCAAATATATCGCTAACCGTTCGTCTGAGGAATCATTCTGTTTTATTTCAGTCATTATTTCATTTATAATTTCGGGATCCGTCTTGATATTCATGTTTATTTTCTGGAAGTCTTTTTTCAATTCGTCATATGAACGAAAGTGTCTGGCTGACTGAGTGTTGGGCTTGCTCAAGTTATCCGCTTCCCCCGT-CGTCGACACATTGATGGCAGGTTTCCCAGGTTCACCTGCAATTACATTGGAAGGGCTAGACATCACACCCATATGTTTAGCCTCTCTGTACCGGGTCTTCAAGTTTTGTCTCGCATGTAGACCAAAATGGACTCCATGGCCGGGTGTGACTTCTTCCCACTCATGAGTAGGGACAAAATCACTAGAATTTTTTGTGTATGACGTCACTATGAGCAGAAACACCACAATTAAAACCCATATGGTCTCCACCTAAAGGTGCAAAGTGAGGTGTGACGTTGCGGTGCACACAGCTGAGACAGCGTAGGTGAAAACAC] [+] EMBL BG932472 [TTGTCCATTTATGCATGCCTTCAAAAAGAATGTAACTGGTCAACCAAACCACTTTGAAGTGCGACTACTTTGACTTCAGAATTTCCCTGAGTAGCGGCACCAATGGCTTTCAAAGTATCTTTTTTAACTTCATAACTGGGATGGTGTAAAAGCTGTAACAGTGTTTCGAAACCATTTTTGGAGAAAATCCTTGCATTGTCAATCTGGTGCAGGTAGTAAGACAGATCTTCCAAATATATCGCTAACCGTTCGTCTGAGGAATCATTCTGTTTTATTTCAGTCATTATTTCATTTATAATTTCGGGATCCGTCTTGATATTCATGTTTATTTTCTGGAAGTCTTTTTTCAATTCGTCATATGAACGAAAGTGTCTGGCTGACTGAGTGTTGGGCTTGCTCAAGTTATCCGCTTCCCCCGT CG ] [+] EMBL CD120392 [ AACTGGTCAACCAAACCACTTTGAAGTGCGACTACTTTGACTTCAGAATTTCCCTGAGTAGCGGCACCAATGGCTTTCAAAGTATCTTTTTTAACTTCATAACTGGGATGGTGTAAAAGCTGTAACAGTGTTTCGAAACCATTTTTGGAGAAAATCCTTGCATTGTCAATCTGGTGCAGGTAGTAAGACAGATCTTCCAAATATATCGCTAACCGTTCGTCTGAGGAATCATTCTGTTTTATTTCAGTCATTATTTCATTTATAATTTCGGGATCCGTCTTGATATTCATGTTTATTTTCTGGAAGTCTTTTTT ] [+] EMBL CD120450 [ AACTGGTCAACCAAACCACTTTGAAGTGCGACTACTTTGACTTCAGAATTTCCCTGAGTAGCGGCACCAATGGCTTTCAAAGTATCTTTTTTAACTTCATAACTGGGATGGTGTAAAAGCTGTAACAGTGTTTCGAAACCATTTTTGGAGAAAATCCTTGCATTGTCAATCTGGTGCAGGTAGTAAGACAGATCTTCCAAATATATCGCTAACCGTTCGTCTGAGGAATCATTCTGTTTTATTTCAGCCATTATTTCATTTATAATTTCGGGATCCGTCTTGATATTCGTGTTTATTTTCTGGAAGTCTTTTTT ] [-] EMBL CD120074 [ ACTGGTCAACCAAACCACTTTGAAGTGCGACTACTTTGACTTCAGAATTTCCCTGAGTAGCGGCACCAATGGCTTTCAAAGTATCTTTTTTAACTTCATAACTGGGATGGTGTAAAAGCTGTAACAGTGTTTCGAAACCATTTTTGGAGAAAATCCTTGCATTGTCAATCTGGTGCAGGTAGTAAGACAGATCTTCCAAATATATCGCTAACCGTTCGTCTGAGGAATCATTCTGTCTTATTTCAGTCATTATTTCATTTATAATTTCGGGATCCGTCTTGATATTCATGTTTATTTTCTGGAAGTCTTTTTTC ] [-] EMBL CD120257 [ ACTGGTCAACCAAACCACTTTGAAGTGCGACTACTTTGACTTCAGAATTTCCCTGAGTAGCGGCACCAATGGCTTTCAAAGTATCTTTTTTAACTTCATAACTGGGATGGTGTAAAAGCTGTAACAGTGTTTCGAAACCATTTTTGGAGAAAATCCTTGCATTGTCAATCTGGTGCAGGTAGTAAGACAGATCTTCCAAATATATCGCTAACCGTTCGTCTGAGGAATCATTCTGTTTTATTTCAGTCATTATTTCATTTATAATTTCGGGATCCGTCTTGATATTCATGTTTATTTTCTGGAAGTCTTTTTTC ] [-] EMBL CD141809 [ ATATTCATGTTTATTTTCTGGAAGTCTTTTTTCAATTCGTCATATGAACGAAAGTGTCTGGCTGACTGAGTGTTGGGCTTGCTCAAGTTATCCGC TCCCGAATATGTCGACACATTGATGGCAGGTTTCCCAGGTTCACCTGCAATTACATTGGAAGGGCTAGACATCACACCCATATGTTTAGCCTCTCTGTACCGGGTCTTCAAGTTTTGTCTCGCATGTAGACCAAAATGGACTCCATGGCCGGGTGTGACTTCTTCCCACTCATGAGTAGGGACAAAATCACTAGAATTTTTTGTGTATGACGTCACTATGAGCAGAAACACCACAATTAAAACCCATATGGTCTCCACCTAAAGGTGCAAAGTGAGGTGTGACGTTGCGGTGCACACAGCTGAGACAGCGTAGGTGAAAACAC] consensusID : consensus_9371#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 375 fasta sequence [ACACCTGTACGCCTTCATAAAAGAATGTAACTGGTCAACCAAACCACTTTGAAGTGCGACTACTTTGACTTCAGAATTTCCCTGAGTAGCGGCACCAATGGCTTTCAAAGTATCTTTTTTAACTTCATAACTGGGATGGTGTAAAAGCTGTAACAGTGTTTCGAAACCATTTTTGGAGAAAATCCTTGCATTGTCAATCTGTGAGTAGAAAAGGCCGGATTACAGCTGTACCTGGTGCAGGTAGTAAGACAG-ATCTTCC-AAATATATCGCTAACCGTTCGTCTGAGGAATCATTCTGTTTTATTTCAGTCATTATTTCATTTATAATTTCGGGATCCGTCTTGATATTCATGTTTATTTTCTGGAAGTCTTTTTT] [+] EMBL CD170011 [ACACCTGTACGCCTTCATAAAAGAATGTAACTGGTCAACCAAACCACTTTGAAGTGCGACTACTTTGACTTCAGAATTTCCCTGAGTAGCGGCACCAATGGCTTTCAAAGTATCTTTTTTAACTTCATAACTGGGATGGTGTAAAAGCTGTAACAGTGTTTCGAAACCATTTTTGGAGAAAATCCTTGCATTGTCAATCTGTGAGTAGAAAAGGCCGGATTACAGCTGTACCTGGTGCAGGTAGTAAGACAG ATCTTCC AAATATATCGCTAACCGTTCGTCTGAGGAATCATTCTGTTTTATTTCAGTCATTATTTCATTTATAATTTCGGGATCCGTCTTGATATTCATGTTTATTTTCTGGAAGTCTTTTTT] [+] EMBL CD092329 [ TGGTGTAAAAGCTGTAACAGTGTTTCGAAACCATTTTTGGAGAAAATCCTTGCATTGTCAATCTGTGAGTAGAAAAGGCCGGATTACAGCTGTACCTGGTGCAGGTAGTAAGACAGAATCTTCCAAAATATATCGCTAACCGTTCGTCTGAGGAATCATTCTGTTTTATTTCAGTCATTATATCATTTAAAATTTCGGGATCCGTCTTGATATTCATGTTTACTTTCTGGAAGTCTTTTTT] consensusID : consensus_9371#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 134 fasta sequence [TGATGGCAGGTTTCCCAGGTTCACCTACTGACTCAACAGTACACATAACTAACCTGCAATTACATTGGAAGGGCTAGACATCACACCCATATGTTTAGCCTCTCTGTACCGGGTCTTCAAGTTTTGTCTCGCAT] [+] EMBL CD136438 [TGATGGCAGGTTTCCCAGGTTCACCTACTGACTCAACAGTACACATAACTAACCTGCAATTACATTGGAAGGGCTAGACATCACACCCATATGTTTAGCCTCTCTGTACCGGGTCTTCAAGTTTTGTCTCGCAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9371#0 TTGTCCATTTATGCATGCCTTCA-AAAAGAATGTAACTGGTCAACCAAACCACTTTGAAG 59 consensus_9371#1 ------ACACCTGTACGCCTTCATAAAAGAATGTAACTGGTCAACCAAACCACTTTGAAG 54 consensus_9371#2 -----------------------------------------TGATGGCAGGTTTCCCAGG 19 * * * * * consensus_9371#0 TGCGACTACTTTGACTTCAGAATTTCCCTGAGTAGCGGCACCAATGGCTTTCAAAGTATC 119 consensus_9371#1 TGCGACTACTTTGACTTCAGAATTTCCCTGAGTAGCGGCACCAATGGCTTTCAAAGTATC 114 consensus_9371#2 TTCACCTAC--TGACTCAACAGTACACATAACTAAC--CTGCAATTACATTGGAAGGGC- 74 * * **** ***** * * * * * * ** * * **** * ** *** consensus_9371#0 TTTTTTAACTTCATAACTGGGATGGTGTAAAAGCTGTAACAGTGTTTCGAAACCATTTTT 179 consensus_9371#1 TTTTTTAACTTCATAACTGGGATGGTGTAAAAGCTGTAACAGTGTTTCGAAACCATTTTT 174 consensus_9371#2 ----TAGACATCACACCCATATGTTTAGCCTCTCTGTACCGGGTCTTCAAGTTTTGTCTC 130 * ** *** * * * ***** * * *** * * * consensus_9371#0 GGAGAAAATCCTTGCATTGTCAATCTG--------------------------------- 206 consensus_9371#1 GGAGAAAATCCTTGCATTGTCAATCTGTGAGTAGAAAAGGCCGGATTACAGCTGTACCTG 234 consensus_9371#2 GCAT-------------------------------------------------------- 134 * * consensus_9371#0 GTGCAGGTAGTAAGACAGATCTTCCAAATATATCGCTAACCGTTCGTCTGAGGAATCATT 266 consensus_9371#1 GTGCAGGTAGTAAGACAGATCTTCCAAATATATCGCTAACCGTTCGTCTGAGGAATCATT 294 consensus_9371#2 ------------------------------------------------------------ consensus_9371#0 CTGTTTTATTTCAGTCATTATTTCATTTATAATTTCGGGATCCGTCTTGATATTCATGTT 326 consensus_9371#1 CTGTTTTATTTCAGTCATTATTTCATTTATAATTTCGGGATCCGTCTTGATATTCATGTT 354 consensus_9371#2 ------------------------------------------------------------ consensus_9371#0 TATTTTCTGGAAGTCTTTTTTCAATTCGTCATATGAACGAAAGTGTCTGGCTGACTGAGT 386 consensus_9371#1 TATTTTCTGGAAGTCTTTTTT--------------------------------------- 375 consensus_9371#2 ------------------------------------------------------------ consensus_9371#0 GTTGGGCTTGCTCAAGTTATCCGCTTCCCCCGTCGTCGACACATTGATGGCAGGTTTCCC 446 consensus_9371#1 ------------------------------------------------------------ consensus_9371#2 ------------------------------------------------------------ consensus_9371#0 AGGTTCACCTGCAATTACATTGGAAGGGCTAGACATCACACCCATATGTTTAGCCTCTCT 506 consensus_9371#1 ------------------------------------------------------------ consensus_9371#2 ------------------------------------------------------------ consensus_9371#0 GTACCGGGTCTTCAAGTTTTGTCTCGCATGTAGACCAAAATGGACTCCATGGCCGGGTGT 566 consensus_9371#1 ------------------------------------------------------------ consensus_9371#2 ------------------------------------------------------------ consensus_9371#0 GACTTCTTCCCACTCATGAGTAGGGACAAAATCACTAGAATTTTTTGTGTATGACGTCAC 626 consensus_9371#1 ------------------------------------------------------------ consensus_9371#2 ------------------------------------------------------------ consensus_9371#0 TATGAGCAGAAACACCACAATTAAAACCCATATGGTCTCCACCTAAAGGTGCAAAGTGAG 686 consensus_9371#1 ------------------------------------------------------------ consensus_9371#2 ------------------------------------------------------------ consensus_9371#0 GTGTGACGTTGCGGTGCACACAGCTGAGACAGCGTAGGTGAAAACAC 733 consensus_9371#1 ----------------------------------------------- consensus_9371#2 ----------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||