These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9377#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1384 fasta sequence [AGCTGCAGCAACAATGGCTGCTATGGCCGCTATGACTGGACCAACTCAAGATATGACCTCGTTTGGTCAAACTGTGGCTTCTGTGTCTTATTCTGATTCTAAACCGCAAGTGTCCGCTACACATTTAGGAATACAAGAATATCCAGTTATTTGGCGAGGACGTCTTTCCCTGAAAAATGAAGAGGTTTTTGTTAATATGCATTATGTTAGTGGGAATCAAGATCTATTGAAAAGCTGTATGTGTGTTATAACAGAACAACAAGTAGCTCTTAGCAACATTGCTACAAGTTCTAGTTCGTTGGGGTCGTGCATGACTGGGGATGCTATTGGGCCTCCACACCATCCTTTAAGGATTGTTCAACGAATGCGTTTAGAAGCATCTCAACTTGAAGGGGTTCAGAGGAAATTAAGACAAA-TAAATGATTTTTGTATGTGCCTTACCCTAGCATCTGCTCCTCTACTAACCCCTGATGCTTCATTGAATAATGAACAAATACGGATGAACAGAATACTGTGTGATGGATTTATCAAATACATGCTTGAAAAGGGTGCCGCTGGAATAATAAATGTTTGTCATCCATGCACTCAACAAAATCTGTATGTCATCCATATATTTCCTCCCTGTGAATTTTCACGTTGCCAGTTACAAGCATGTGCTCCTGCCCTTTATCACAGTTTAGCGGAAAATTCCATACCTCACGTATTAACTGTGATCACAACAGTATGACCGTGATGCATTTAACTCCTGATTTGTTTCCTCAGTGGGTTTTGAAATGTCCTTTTATCACTTCGTTCAATATAATGGACCAAGTTTAATTCCGATAAATGTACTAATCAACGGGTATCTCAGTTAGTGCCTGTCTATCGAAATCTATATTTCTCTTCTCTCAGAACTTATGGCAGCCAATAAGCTTGAAGTAAATCCTTCTCTGAAATTATTTGTTCCCTGGCATCATCCATGTTTATTATGTTTAGTCTGCCTGTTTCTTGGTTTGAGTAGCATAATGCAAATATTCTGCCCGAATTTTCGCCTAATAAGGATAAATAAAATTTTAATTGCCTGTCCAAAGTTACGCACTGTGATTCTCTATTTTACTTGACCTTATTTTCAAAATGTCACTGATTGTATATATAGTGTATATGTTTGTGTGTGTCCATGATCCCTTCACCTTATTTGAGGCAGCTTAAACCAATAATTTTTGATATATTGTGTATGTACATACCTATGTTTTCCACATATTGATTTGTTTTAAATGAACAACAAGCCCATGTATATATGTTCAGTGGCGTGACTAGTCAGATTGTTTTTAAATGATATATTCATTCGGATTATATATTTTACTTTGTTGCTTTTTAATGGCTAAAAATTAAATATTAACTAATT] [+] EMBL CD078843 [AGCTGCAGCAACAATGGCTGCTATGGCCGCTATGACTGGACCAACTCAAGATATGACCTCGTTTGGTCAAACTGTGGCTTCTGTGTCTTATTCTGATTCTAAACCGCAAGTGTCCGCTACACATTTAGGAATACAAGAATATCCAGTTATTTGGCGAGGACGTCTTTCCCTGAAAAATGAAGAGGTTTTTGTTAATATGCATTATGTTAGTGGGAATCAAGATCTATTGAAAAGCTGTATGTGTGTTATAACAGAACAACAAGTAGCTCTTAGCAACATTGCTACAAGTTCTAGTTCGTTGGGGTCGTGCATGACTGGGGATGCTATTGGGCCTCCACACCATCCTTTAAGGATTGTTCAACGAATGCGTTTAGAAGCATCTCAACTTGAAGGGGTTCAGAGGAAATTAAGACAAA TAAATGATTTTTGTATGTGCCTTACCCTAGCATCTGCTCCTCTACTAACCCCTGATGCTTCATTGAATAATGAACAAATACGGATGAACAGAATACTGTGTGATGGATTTATCANATACATGCTTGAAAAGGGTGCCGCTGGAATAATAAATGTTTGTCATCCATGCACTCNACANAATCTGTATGTCATCCATA ] [-] EMBL CD201420 [ TTAGCAACATTGCTACAAGTTCTAGTTCGTTGGGGTCGTGCATGACTGGGGATGCTATTGGGCCTCCACACCATCCTTTAAGGATTGTTCAACGAATGCGTTTAGAAGCATCTCAACTTGAAGGGGTTCAGAGGAAATTAAGACAAA TAAATGATTTTTGTATGTGCCTTACCCTAGCATCTGCTCCTCTACTAACCCCTGATGCTTCATTGAATAATGAACAAATACGGATGAACAGAATACTGTGTGATGGATTTATCAAATACATGCTTGAAAAGGGTGCCGCTGGAATAATAAATGTTTGTCATCCATGCACTCAACAAAATCTGTATGTCATCCATATATTTCCTCCCTGTGAATTTTCACGTTGCCAGTTACAAGCATGTGCTCCTGCCCTTTATCACAGTTTAGCGGAAAATTCCATACCTCACGTATTAACTGTGATCACAACAGTATGACCGTGATGCATTTAACTCCTGA ] [+] EMBL CD187206 [ TTGGGCCTCCACACCATCCTTTAAGGATTGTTCAACGAATGCGTTTAGAAGCATCTCAACTTGAAGGGGTTCAGAGGAAATTAAGACAAA TAAATGATTTTTGTATGTGCCTTACCCTAGCATCTGCTCCTCTACTAACCCCTGATGCTTCATTGAATAACGAACAAATACGGATGAACAGAATACTGTGTGATGGATTTATCAAATACATGCTTGAAAAGGGTGCCGCTGGAATAATAAATGTTTGTCATCCATGCACTCAACAAAATCTGTATGTCATCCATATATTTCCTCCCTGTGAATTTTCACGTTGCCAGTTACAAGCATGTGCTCCTGCCCTTTATCACAGTTTAGCGGAAAATTCCATACCTCACGTATTAACTGTGATCAC ] [-] EMBL CD187514 [ TGGGCCTCCACACCATCCTTTAAGGATTGTTCAACGAATGCGTTTAGAAGCATCTCAACTTGAAGGGGTTCAGAGGAAATTAAGACAAA TAAATGATTTTTGTATGTGCCTTACCCTAGCATCTGCTCCTCTACTAACCCCTGATGCTTCATTGAATAATGAACAAATACGGATGAACAGAATACTGTGTGATGGATTTATCAAATACATGCTTGAAAAGGGTGCCGCTGGAATAATAAATGTTTGTCATCCATGCACTCAACAAAATCTGTATGTCATCCATATATTTCCTCCCTGTGAATTTTCACGTTGCCAGTTACAAGCATGTGCTCCTGCCCTTTATCACAGTTTAGCGGAAAATTCCATACCTCACGTATTAACTGTGATCACA ] [-] EMBL CD187163 [ CATCTCAACTTGAAGGGGTTCAGAGGAAATTAAGACAAA TAAATGATTTTTGTATGTGCCTTACCCTAGCATCTGCTCCTCTACTAACCCCTGATGCTTCATTGAATAATGAACAAATACGGATGAACAGAATACTGTGTGATGGATTTATCAAATACATGCTTGAAAAGGGTGCCGCTGGAATAATAAATGTTTGTCATCCATGCACTCAACAAAATCTGTATGTCATCCATATATTTCCTCCCTGTGAATTTTCACGTTGCCAGTTACAAGCATGTGCTCCTGCCCTTTATCACAGTTTAGCGGAAAATTCCATACCTCACGTATTAACTGTGATCACA ] [+] EMBL CD084406 [ gAGGGGAAATTAAGACAAANTAAATGATTTTTGTATGTGCCTTACCCTAGCATCTGCTCCTCTACTAACCCCTGATGCTTCATTGAATAATGAACAAATACGGATGAACAGAATACTGTGTGATGGATTTATCAAATACATGCTTGAAAAGGGTGCCGCTGGAATAATAAATGTTTGTCATCCATGCACTCAAC AAATCTGTATGTCATCCATATATTTCCTCCCTGTGAATTTTCACGTTGCCAGTTACAAGCATGTGCTCCTGCCCTTTATCACAGTTTAGCGGAAAATTCCATACCTCACGTATTAACTGTGATCACAACAGTATGACCGTGATGCATTTAACTCCTGATTTGTTTCCTCAGTGGGTTTTGAAATGTCCTTTTATCACTTCGTTCAATATAATGGACCAAGTTTAATTCCGATAAATGTACTAATCAACGGGTATCTCAGTTAGTGCCTGTCTATCGAAATCTATATTTCTCTTCTCTCAGAACTTATGGCA ] [-] EMBL CD073304 [ TCTCAGTTAGTGCCTGTCTATCGAAATCTATATTTCTCTTCTCTCAGACCTTATGGCAGCCAATAAGCTTGAAGTAAATCCTTCTCTGAAATTATTTGTTCCCTGGCATCATCCATGTTTATTATGTTTAGTCTGCCTGTTTCTTGGTTTGAGTAGCATAATGCAAATATTCTGCCCGAATTTTCGCCTAATAAGGATAAATAAAATTTTAATTGCCTGTCCAAAGTTACGCACTGTGATTCTCTATTTTACTTGACCTTATTTTCAAAATGTCACTGATTGTATATATAGTGTATATGTTTGTGTGTGTCCATGATCCCTTCACCTTATTTGAGGCAGCTTAAACCAATAATTTTTGATATATTGTGTATGTACATACCTATGTTTTCCACATATTGATTTGTTTTAAATGAACAACAAGCCCATGTATATATGTTCAGTGGCGTGACTAGTCAGATTGTTTTTAAATGATATATTCATTCGGATTATATATTTTACTTTGTTGCTTTTTAATGGCTAAAAATTAAATATTAACTA ] [-] EMBL AI974980 [ TGTTTCTTGGTTTGAGTAGCATAATGCAAATATTCTGCCCGAATTTTCGCCTAATAAGGATAAATAAAATTTTAATTGCCTGTCC AAGTTACGCACTGTGATTCTCTATTTAACTTGACCTTATTTTCAAAATGTCACTGATTGTATATATAGTGTATATGTTTGTGTGTGTCCATGATCCCTTCCCCTCATTTGAGGCAGCTTAAACCAATAATTTTTGATAAATTGTGTATGTACACACCTATGTTTTCCACATATTGATTTGTTTTAAATGAACAACAAGCCCATGTATATATGTTCAGTGGCGTGACTAGTCAGATTGTTTTTAAATGATATATTCATTCGGATTATATATTTTACTTTGTTGCTTTTTAATGGCTAAAAATTAAATATTACCTAATT] consensusID : consensus_9377#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 165 fasta sequence [CTACAATTAAAAGACTATATATTATGCCCGAATTTTCGCCTAATAAGAGATAAATAAAATTTTAATTGCCTGTCCAAAGTTACGCACTGTGATTCTCTATTTTACTTGACCTTATTTTCAAATGTCACTGATTGTATATATAGTGTAATGCTTCGTGTGTGTCCA] [-] EMBL CD061966 [CTACAATTAAAAGACTATATATTATGCCCGAATTTTCGCCTAATAAGAGATAAATAAAATTTTAATTGCCTGTCCAAAGTTACGCACTGTGATTCTCTATTTTACTTGACCTTATTTTCAAATGTCACTGATTGTATATATAGTGTAATGCTTCGTGTGTGTCCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9377#0 AGCTGCAGCAACAATGGCTGCTATGGCCGCTATGACTGGACCAACTCAAGATATGACCTC 60 consensus_9377#1 ------------------------------------------------------------ consensus_9377#0 GTTTGGTCAAACTGTGGCTTCTGTGTCTTATTCTGATTCTAAACCGCAAGTGTCCGCTAC 120 consensus_9377#1 ------------------------------------------------------------ consensus_9377#0 ACATTTAGGAATACAAGAATATCCAGTTATTTGGCGAGGACGTCTTTCCCTGAAAAATGA 180 consensus_9377#1 ------------------------------------------------------------ consensus_9377#0 AGAGGTTTTTGTTAATATGCATTATGTTAGTGGGAATCAAGATCTATTGAAAAGCTGTAT 240 consensus_9377#1 ------------------------------------------------------------ consensus_9377#0 GTGTGTTATAACAGAACAACAAGTAGCTCTTAGCAACATTGCTACAAGTTCTAGTTCGTT 300 consensus_9377#1 ------------------------------------------------------------ consensus_9377#0 GGGGTCGTGCATGACTGGGGATGCTATTGGGCCTCCACACCATCCTTTAAGGATTGTTCA 360 consensus_9377#1 ------------------------------------------------------------ consensus_9377#0 ACGAATGCGTTTAGAAGCATCTCAACTTGAAGGGGTTCAGAGGAAATTAAGACAAATAAA 420 consensus_9377#1 ------------------------------------------------------------ consensus_9377#0 TGATTTTTGTATGTGCCTTACCCTAGCATCTGCTCCTCTACTAACCCCTGATGCTTCATT 480 consensus_9377#1 ------------------------------------------------------------ consensus_9377#0 GAATAATGAACAAATACGGATGAACAGAATACTGTGTGATGGATTTATCAAATACATGCT 540 consensus_9377#1 ------------------------------------------------------------ consensus_9377#0 TGAAAAGGGTGCCGCTGGAATAATAAATGTTTGTCATCCATGCACTCAACAAAATCTGTA 600 consensus_9377#1 ------------------------------------------------------------ consensus_9377#0 TGTCATCCATATATTTCCTCCCTGTGAATTTTCACGTTGCCAGTTACAAGCATGTGCTCC 660 consensus_9377#1 ------------------------------------------------------------ consensus_9377#0 TGCCCTTTATCACAGTTTAGCGGAAAATTCCATACCTCACGTATTAACTGTGATCACAAC 720 consensus_9377#1 ------------------------------------------------------------ consensus_9377#0 AGTATGACCGTGATGCATTTAACTCCTGATTTGTTTCCTCAGTGGGTTTTGAAATGTCCT 780 consensus_9377#1 ------------------------------------------------------------ consensus_9377#0 TTTATCACTTCGTTCAATATAATGGACCAAGTTTAATTCCGATAAATGTACTAATCAACG 840 consensus_9377#1 ------------------------------------------------------------ consensus_9377#0 GGTATCTCAGTTAGTGCCTGTCTATCGAAATCTATATTTCTCTTCTCTCAGAACTTATGG 900 consensus_9377#1 ------------------------------------------------------------ consensus_9377#0 CAGCCAATAAGCTTGAAGTAAATCCTTCTCTGAAATTATTTGTTCCCTGGCATCATCCAT 960 consensus_9377#1 ------------------------------------------------------------ consensus_9377#0 GTTTATTATGTTTAGTCTGCCTGTTTCTTGGTTTGAGTAGCATAATGCAAATATTCTGCC 1020 consensus_9377#1 ------------------------------CTACAATTAAAAGACTAT--ATATTATGCC 28 * * ** * * * ***** **** consensus_9377#0 CGAATTTTCGCCTAATAAG-GATAAATAAAATTTTAATTGCCTGTCCAAAGTTACGCACT 1079 consensus_9377#1 CGAATTTTCGCCTAATAAGAGATAAATAAAATTTTAATTGCCTGTCCAAAGTTACGCACT 88 ******************* **************************************** consensus_9377#0 GTGATTCTCTATTTTACTTGACCTTATTTTCAAAATGTCACTGATTGTATATATAGTGTA 1139 consensus_9377#1 GTGATTCTCTATTTTACTTGACCTTATTTTCAAA-TGTCACTGATTGTATATATAGTGTA 147 ********************************** ************************* consensus_9377#0 TATGTTTGTGTGTGTCCATGATCCCTTCACCTTATTTGAGGCAGCTTAAACCAATAATTT 1199 consensus_9377#1 ATGCTTCGTGTGTGTCCA------------------------------------------ 165 ** *********** consensus_9377#0 TTGATATATTGTGTATGTACATACCTATGTTTTCCACATATTGATTTGTTTTAAATGAAC 1259 consensus_9377#1 ------------------------------------------------------------ consensus_9377#0 AACAAGCCCATGTATATATGTTCAGTGGCGTGACTAGTCAGATTGTTTTTAAATGATATA 1319 consensus_9377#1 ------------------------------------------------------------ consensus_9377#0 TTCATTCGGATTATATATTTTACTTTGTTGCTTTTTAATGGCTAAAAATTAAATATTAAC 1379 consensus_9377#1 ------------------------------------------------------------ consensus_9377#0 TAATT 1384 consensus_9377#1 ----- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||