These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9378#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1353 fasta sequence [GATTTCATTTACTCCTCTATGATATCTAATCATGTTTATTTTCTTGTTAACAGTTTGCGTATAAGGAAGTTATCCTATTGGGTGAAAACACCTATTTTGCTCGCTAATAATATTATCTGTAATGTCAGCTCGTGCTGGGATTTGCAATAATAATCCANNNNNNTGAGCTGTTATCATACTATTACATTTCATCTGTCGATCAAGATTCTTTTCGTTCATTTAACAATTTTTAAACGTCTTTTACATAGAGTCATAAACACGAATGTAATCACCTAGTTAATTGATTGCATTACAAACTTATAGGATTTTATCNNNNNNNNNNNNNNNNTACACCTTAGTCTCATTAACCACCTAATCAATTATTCTGTGTTTGTATTCAGATTTTTCACTGATCTCTTATACAAAATACATTATTTTATAATTTCATCGGTACCTGATGTGAAGTAATCGACGATATTTTTTTTCAACTTTGTTTCATCTTGTATTTCGGCTTGGTCATGTGGAACTGGTGCAGCCGGTCTAATTGGTTCACTTTATTATGTTGGCTTGACATCAGTAACAACACCGGAAATTACATTATGTATTGTTATTGTG-GTTCCATGTACTACATTGTTAGTGTATTTCTTCGTTCTAGACAGACCTCATCATGAAAAATTTCGACTGTGTTTCAACCCTATGGTTTCATCGAACAATTCCACAATGTCAACAGAGAGGATAAATACGTTAGTAGCTAGTGATGAGTCAGAGCACAGTCATAATGGTGACTTAGTTGAGGTTGTAAATGACAGTGAGGTAATCACTCATTCTGATGGGTATATTCAACTGAGAAATGAAGATGACATGGTTTATCATGACAGTTCACAAATTCCGAATAATTCATCTCTACCTGTTCTAAATCAGCAACAACCTACATGGAAAATAAAACTACAGTTGTTGAAGGGAATGATTATTTCATTATTTTGTCTAGTTTCAGTATATTTCTTCGAGTATTTAATTAACCAATCATTGTTTGAATTACTTTACTTTCAAAATACACGTTTAACTGCTCCAGAACAATATAGATGGTATCAAGTACTTTATCAAATTGGTGTATTTTTATCAAGATCGTCAGTCAATTTTATTCATTTTAAGACCACCTGGATTATGTCATTGATACAAGCTATAAATTTTGTAATTTGTTTATTACAAGTGATCTATTCTTATATACCACATATATGGATAATGTTCATGGTGATATTCTATGAAGGATGTCTAGGTGGTTTAACTTATGTTAACACGTTTTATAATATTCTTCAAGAAACTTCTCCTATCTACCGTGAATATGCAATGGCAATGGCAACTGTATCTGATTCA] [+] EMBL CD080908 [GATTTCATTTACTCCTCTATGATATCTAATCATGTTTATTTTCTTGTTAACAGTTTGCGTATAAGGAAGTTATCCTATTGGGTGAAAACACCTATTTTGCTCGCTAATAATATTATCTGTAATGTCAGCTCGTGCTGGGATTTGCAATAATAATCCANNNNNNTGAGCTGTTATCATACTATTACATTTCATCTGTCGATCAAGATTCTTTTCGTTCATTTAACAATTTTTAAACGTCTTTTACATAGAGTCATAAACACGAATGTAATCACCTAGTTAATTGATTGCATTACAAACTTATAGGATTTTATCNNNNNNNNNNNNNNNNTACACCTTAGTCTCATTAACCACCTAATCAATTATTCTGTGTTTGTATTCAGATTTTTCACTGATCTCTTATACAAAATACATTATTTTATAATTTCATCGGTACCTGATGTGAAGTAATCGACGATATTTTTTTTCAACTTTGTTTCATCTTGTATTTCGGCTTGGTCATGTGGAACTGGTGCAGCCGGTCTAATTGGTTCACTTTATTATGTTGGCTTGACATCAGTAACAACACCGGANATTACATTATGTATTGTTATTGTG GTTCCATGTACTACATTGTTAGTGTATTTCTTCGTTCTAGACAGACCTCA ] [+] EMBL CD116072 [ GTGCAGCCGGTCTAATTGGTTCACTTTATTATGTTGGCTTGACATCAGTAACAACACCGGAAATTACATTATGTATTGTTATTGTG GTTCCATGTACTACATTGTTAGTGTATTTCTTCGTTCTAGACAGACCTCATCATGAAAAATTTCGACTGCGTTTCAACCCTATGGTTTCATCGAACAATTCCACAATGTCAACAGAGAGGATAAATACGTTAGTAACTAGTGATGAGTCAGAGCACAGTCATAATGGTGACTTAGTTGAGGTTGTAAATGACAGTGAGGTAATCACTCATTCTGATGGGTATATTCAACTGAGAAATGAAGATGACATGGTTTATCATGACAGTTCACAAATTCCGAATAATTCATCTCTACCTGTTCTAAATCAGCAACAACCTACATGGAAAATAAAACTACAGTTGTTGAAGGGAATGATTATTTCATTATTTTGTCTAGTTTCAGTATATTTCTTCGAGTATTTAATTAACCAATCATTGTTTGAATTACTTTACTTTC AAATACACGTTTAACTGCTCCAGAANCATATAGATGGTATCAAGTACTTTA ] [-] EMBL CD116112 [ TTCACTNTATTATGTTGGCTTGACATCAGTAACAACACCGGAAATTACATTATGTATTGTTATTGTG GTTCCATGTACTACATTGTTAGTGTATTTCTTCGTTCTAGACAGACCTCATCATGAAAAATTTCGACTGTGTTTCAACCCTATGGTTTCATCGAACAATTCCACAATGTCAACAGAGAGGATAAATACGTTAGTAGCTAGTGATGAGTCAGAGCACAGTCATAATGGTGACTTAGTTGAGGTTGTAAATGACAGTGAGGTAATCACTCATTCTGATGGGTATATTCAACTGAGAAATGAAGATGACATGGTTTATCATGACAGTTCACAAATTCCGAATAATTCATCTCTACCTGTTATAAATCAGCAACAACCTACATGGAAAATAAAACTACAGTTGTTGAAGGGAATGATTATTTCATTATTTTGTCTAGTTTCAGTATATTTCTTCGAGTATTTAATTAACCAATCATTGTTTGAATTACTTTACTTTCAAAATACACGTTTAACTGCTCCAGAACAATATAGATGGTATCAAGTACTTTATCAAATTGGTGTATTTTTATCAAGATCGTCAGTCAATTTTATTCATTTTAAGACC ] [-] EMBL CD116226 [ AGTANCAACACCGGAAATTACATTATGTATTGTTA TGTGNGTTCCATGTACTACATTGTTAGTGTATTTCTTCGTTCTAGACAGACCTCATCATGAAAAATTTCGACTGTGTTTCAACCCTATGGTTTCATCGAACAATTCCACAATGTCAACAGAGAGGATAAATACGTTAGTAGCTAGTGATGAGTCAGAGCACAGTCATAATGGTGACTTAGTTGAGGTTGTAAATGACAGTGAGGTAATCACTCATTCTGATGGGTATATTCAACTGAGAAATGAAGATGACATGG TTATCATGACAGTTCACAAATTCCGAATAATTCATCTCTACCTGTTCTAAATCAGCAACAACCTACATGGAAAATAAAACTACAGTTGTTGAAGGGAATGATTATTTCATTATTTTGTCTAGTTTCAGTATATTTCTTCGAGTATTTAATTAACCAATCATTGTTTGAATTACTTTACTTTCAAAATACACGTTTAACTGCTCCAGAACAATATAGATGGTATCAAGTACTTTATCAAATTGGTGTATTTTTATCAAGATCGTCAGTCAATTTTATTCATTTTAAGACC ] [-] EMBL CD114096 [ ATCGTGCCAGTTCACAAATTCCGAATAATTCATCTCTACCTGTTATAAAGCAGCAACAACCTACATGGAAAATAAAACTACAGTTGTTGAAGGGAATGATTATTTCATTATTTTGTCTAGTTTCAGTATATTTCTTCGAGTATTTAATTAACCAATCATTGTTTGAATTACTTTACTTTCAAAATACACGTTTAACTGCTCCAGAACAATATAGATGGTATCAAGTACTTTATCAAATTGGTGTACTTTTATCAAGATCGTCAGTCAATTTTATTCATTTTAAAGCCACCTGGATTATGTCATTGA ] [-] EMBL CD096198 [ TATTTCATTATTTTGTCTAGTTTCAGTATATTTCTTCGAGTATTTAATTAACCAATCATTGTTTGAATTACTTTACTTTCAAAATACACGTTTAACTGCTCCAGAACAATATAGATGGTATCAAGTACTTTATCAAATTGGTGTATTTTTATCAAGATCGTCAGTCAATTTTATTCATTTTAAGACCCCTTGGATTATGTCACTGCTACAAGCTATAAATTTTGTAATTTGTTTATTACAAGTGATCTATTCTTATATACCACATATATGGATAATGTTCATGGTGATATTCTATGAAGGATGTCTAGGTGGTTTAACTTATGTTAACACGTTTTATAATATTCTTCAAGAAACTTCTCCTATCTACCGTGAATATGCAATGGCAATGGCAACTGTATCTGATTCA] consensusID : consensus_9378#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 604 fasta sequence [GGACCACAACCATCACGAAACCTAGTTCTAGAGTTTCTTACTGACTACTTTCAGTCAGTTAACATCATAATGTAAACCATTGATATAGATTAGATTAACTGTTGCGGTTGACTTGTAAAATCCACTCGTTTGAGACTACGTTTAATTTTCTGACATAAGTCGTAATGGACTGTAATGTTAGTGTGGTGACAAAATTTTGGCCTAACATTCATATCATAATTCATTGAAGATTGCGTGACCTACAAAACTGATTTCATTTACTCCTCTATGATATCTAATCATGTTTATTTTCTTGTTAACAGTTTGCGTATAAGGAAGTTATCCTATTGGGTGAAAACACCTATTTTGCTCGCTAATAATATTATCTGTAATGTCAGCTCGTGCTGGGATTTGCAATAATAATCCAGTATTGTGAGCTGTTATCATACTATTACATTTCATCTGTCGATCAAGATTCTTTTCGTTCATTTAACAATTTTTAAACGTCTTTTACATAGAGT-CATAA--ACACGAATGTAATCGCCCAGTTAATTGATTGCATTACAAACTTATAGGATTTTATGTACTCTAGGAATT-GTATACACCTTAGTATCATTAACCACCTAA] [-] EMBL CD113300 [GGACCACAACCATCACGAAACCTAGTTCTAGAGTTTCTTACTGACTACTTTCAGTCAGTTAACATCATAATGTAAACCATTGATATAGATTAGATTAACTGTTGCGGTTGACTTGTAAAATCCACTCGTTTGAGACTACGTTTAATTTTCTGACATAAGTCGTAATGGACTGTAATGTTAGTGTGGTGACAAAATTTTGGCCTAACATTCATATCATAATTCATTGAAGATTGCGTGACCTACAAAACTGATTTCATTTACTCCTCTATGATATCTAATCATGTTTATTTTCTTGTTAACAGTTTGCGTATAAGGAAGTTATCCTATTGGGTGAAAACACCTATTTTGCTCGCTAATAATATTATCTGTAATGTCAGCTCGTGCTGGGATTTGCAATAATAATCCAGTATTGTGAGCTGTTATCATACTATTACATTTCATCTGTCGATCAAGATTCTTTTCGTTCATTTAACAATTTTTAAACGTCTTTTACATAGAGT CATAA ACACGAATGTAATCGCCCAGTTAATTGATTGCATTACAAACTTATAGGATTTTATGTACTCTAGGAATT GTATACACCTTAGTATCATTAACCACCTAA] [-] EMBL CD113292 [ TTATCCTATTGGGTGAAAACACCTATTTTGCTCGCTAATAATATTATCTGTAATGTCAGCTCGTGCTGGGATTTGCAATAATAATCCAGTATTGTGAGCTGTTATCATACTATTACATTTCATCTGTCGATCAAGATTCCTTTCGTTCATTTAACAATTTTTAAACGTCTTTTACATAGAGTCCATAAACACACGAATGTAATCACCCAGTTAATTGATTGCACTACAAACTTATAGGATTTTATGTACTATAGGAATTAGGATACACCTTAGTCTCATTAACCGCCTAA] consensusID : consensus_9378#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 264 fasta sequence [CATATGCTAAACAATAACATTAAAGTTAAAAAATCAAACCGAATAAAGATTGTTAGTTGAAAATGATAAGTGATAAAATACATTATAAAAAAAATTATATTACGATCCTCAAGTTAATATATTACACAACCAATTATGCAAATATACGGATAGAAATCCAGCTCCAGCTACGCCAATTGAATCAGATACAGTTGCCATTGCCATTGCATATTCACGGTAGATAGGAGAAGTCTATAAAGTCAGAAATATATGTATACAGGTACA] [+] EMBL BF936276 [CATATGCTAAACAATAACATTAAAGTTAAAAAATCAAACCGAATAAAGATTGTTAGTTGAAAATGATAAGTGATAAAATACATTATAAAAAAAATTATATTACGATCCTCAAGTTAATATATTACACAACCAATTATGCAAATATACGGATAGAAATCCAGCTCCAGCTACGCCAATTGAATCAGATACAGTTGCCATTGCCATTGCATATTCACGGTAGATAGGAGAAGTCTATAAAGTCAGAAATATATGTATACAGGTACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9378#0 ------------------------------------------------------------ consensus_9378#1 GGACCACAACCATCACGAAACCTAGTTCTAGAGTTTCTTACTGACTACTTTCAGTCAGTT 60 consensus_9378#2 ------------------------------------------------------------ consensus_9378#0 ------------------------------------------------------------ consensus_9378#1 AACATCATAATGTAAACCATTGATATAGATTAGATTAACTGTTGCGGTTGACTTGTAAAA 120 consensus_9378#2 ------------------------------------------------------------ consensus_9378#0 ------------------------------------------------------------ consensus_9378#1 TCCACTCGTTTGAGACTACGTTTAATTTTCTGACATAAGTCGTAATGGACTGTAATGTTA 180 consensus_9378#2 ------------------------------------------------------------ consensus_9378#0 ------------------------------------------------------------ consensus_9378#1 GTGTGGTGACAAAATTTTGGCCTAACATTCATATCATAATTCATTGAAGATTGCGTGACC 240 consensus_9378#2 ------------------------------------------------------------ consensus_9378#0 ---------GATTTCATTTACTCCTCTATGATATCTAATCATGTTTATTTTCTTGTTAAC 51 consensus_9378#1 TACAAAACTGATTTCATTTACTCCTCTATGATATCTAATCATGTTTATTTTCTTGTTAAC 300 consensus_9378#2 ------------------------------------------------------------ consensus_9378#0 AGTTTGCGTATAAGGAAGTTATCCTATTGGGTGAAAACACCTATTTTGCTCGCTAATAAT 111 consensus_9378#1 AGTTTGCGTATAAGGAAGTTATCCTATTGGGTGAAAACACCTATTTTGCTCGCTAATAAT 360 consensus_9378#2 ----CATATGCTAAACAATAACATTA--AAGTTAAAAAATCAAACCGAAT---AAAGATT 51 * * * * * ** ** **** * * * * ** * * consensus_9378#0 ATTATCTGTAATGTCAGCTCGTGCTGGGATTTGCAATAATAATCCANNNNNNTGAGCTGT 171 consensus_9378#1 ATTATCTGTAATGTCAGCTCGTGCTGGGATTTGCAATAATAATCCAGTATTGTGAGCTGT 420 consensus_9378#2 GTTAGTTGAAA--ATGATAAGTGATAAAATACATTATAAAAAA--AATTATATTA-CGAT 106 *** ** ** *** * ** **** ** * * * * * consensus_9378#0 TATCATACTATTACATTTCATCTGTCGATCAAGATTCTTTTCGTTCATTTAACAATTTTT 231 consensus_9378#1 TATCATACTATTACATTTCATCTGTCGATCAAGATTCTTTTCGTTCATTTAACAATTTTT 480 consensus_9378#2 CCTCAAGTTAATATATTACA-CAACCAATTATGCAAATATACGGATAGAAATCCAGCTCC 165 *** ** ** *** ** * * ** * * * * ** * * * * * consensus_9378#0 AA--ACGTCTTTTACATAGAGTCATAAACACGAATGTAATCACCTAGTTAATTGATTGCA 289 consensus_9378#1 AA--ACGTCTTTTACATAGAGTCATAAACACGAATGTAATCGCCCAGTTAATTGATTGCA 538 consensus_9378#2 AGCTACGCCAATTGAATCAGAT-ACAGTTGCCATTGCCATTGCATA-TTCACGGTAGATA 223 * *** * ** ** * * * * * ** ** * * ** * * * consensus_9378#0 TTACAAACTTATAGGATTTTATCNNNNNNNNNNNNNNNNTACACCTTAGTCTCATTAACC 349 consensus_9378#1 TTACAAACTTATAGGATTTTATGTACTCTAGGAATTGTATACACCTTAGTATCATTAACC 598 consensus_9378#2 GGAGAAGTCTATAAAGTCAGAAATATATGTATACAGGTACA------------------- 264 * ** **** * * * consensus_9378#0 ACCTAATCAATTATTCTGTGTTTGTATTCAGATTTTTCACTGATCTCTTATACAAAATAC 409 consensus_9378#1 ACCTAA------------------------------------------------------ 604 consensus_9378#2 ------------------------------------------------------------ consensus_9378#0 ATTATTTTATAATTTCATCGGTACCTGATGTGAAGTAATCGACGATATTTTTTTTCAACT 469 consensus_9378#1 ------------------------------------------------------------ consensus_9378#2 ------------------------------------------------------------ consensus_9378#0 TTGTTTCATCTTGTATTTCGGCTTGGTCATGTGGAACTGGTGCAGCCGGTCTAATTGGTT 529 consensus_9378#1 ------------------------------------------------------------ consensus_9378#2 ------------------------------------------------------------ consensus_9378#0 CACTTTATTATGTTGGCTTGACATCAGTAACAACACCGGAAATTACATTATGTATTGTTA 589 consensus_9378#1 ------------------------------------------------------------ consensus_9378#2 ------------------------------------------------------------ consensus_9378#0 TTGTGGTTCCATGTACTACATTGTTAGTGTATTTCTTCGTTCTAGACAGACCTCATCATG 649 consensus_9378#1 ------------------------------------------------------------ consensus_9378#2 ------------------------------------------------------------ consensus_9378#0 AAAAATTTCGACTGTGTTTCAACCCTATGGTTTCATCGAACAATTCCACAATGTCAACAG 709 consensus_9378#1 ------------------------------------------------------------ consensus_9378#2 ------------------------------------------------------------ consensus_9378#0 AGAGGATAAATACGTTAGTAGCTAGTGATGAGTCAGAGCACAGTCATAATGGTGACTTAG 769 consensus_9378#1 ------------------------------------------------------------ consensus_9378#2 ------------------------------------------------------------ consensus_9378#0 TTGAGGTTGTAAATGACAGTGAGGTAATCACTCATTCTGATGGGTATATTCAACTGAGAA 829 consensus_9378#1 ------------------------------------------------------------ consensus_9378#2 ------------------------------------------------------------ consensus_9378#0 ATGAAGATGACATGGTTTATCATGACAGTTCACAAATTCCGAATAATTCATCTCTACCTG 889 consensus_9378#1 ------------------------------------------------------------ consensus_9378#2 ------------------------------------------------------------ consensus_9378#0 TTCTAAATCAGCAACAACCTACATGGAAAATAAAACTACAGTTGTTGAAGGGAATGATTA 949 consensus_9378#1 ------------------------------------------------------------ consensus_9378#2 ------------------------------------------------------------ consensus_9378#0 TTTCATTATTTTGTCTAGTTTCAGTATATTTCTTCGAGTATTTAATTAACCAATCATTGT 1009 consensus_9378#1 ------------------------------------------------------------ consensus_9378#2 ------------------------------------------------------------ consensus_9378#0 TTGAATTACTTTACTTTCAAAATACACGTTTAACTGCTCCAGAACAATATAGATGGTATC 1069 consensus_9378#1 ------------------------------------------------------------ consensus_9378#2 ------------------------------------------------------------ consensus_9378#0 AAGTACTTTATCAAATTGGTGTATTTTTATCAAGATCGTCAGTCAATTTTATTCATTTTA 1129 consensus_9378#1 ------------------------------------------------------------ consensus_9378#2 ------------------------------------------------------------ consensus_9378#0 AGACCACCTGGATTATGTCATTGATACAAGCTATAAATTTTGTAATTTGTTTATTACAAG 1189 consensus_9378#1 ------------------------------------------------------------ consensus_9378#2 ------------------------------------------------------------ consensus_9378#0 TGATCTATTCTTATATACCACATATATGGATAATGTTCATGGTGATATTCTATGAAGGAT 1249 consensus_9378#1 ------------------------------------------------------------ consensus_9378#2 ------------------------------------------------------------ consensus_9378#0 GTCTAGGTGGTTTAACTTATGTTAACACGTTTTATAATATTCTTCAAGAAACTTCTCCTA 1309 consensus_9378#1 ------------------------------------------------------------ consensus_9378#2 ------------------------------------------------------------ consensus_9378#0 TCTACCGTGAATATGCAATGGCAATGGCAACTGTATCTGATTCA 1353 consensus_9378#1 -------------------------------------------- consensus_9378#2 -------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||