These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9387#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 367 fasta sequence [TATTTTTNCTCAAAGCCAATGTCAATTGCTGACATTACTGAGTTATTCGGAAAACTTGACAAAAATCATAATGGCCTTGTATCACAAAAAGAAATTAAAGCTTATCTGAGGTCAAATTCTACTAAATATAACTGT-AAAGAGGTT-AAGG-AATTCGTTGG-AAAAATTGATGACAACTCGGATGGTC-AAATTAGTTTGGAANAACTGACCAAAGCTTTG-TCAGG-AAATTTAGACATT-GCC-AAAGCGTGTCATCTAAAGCCACG-ATAAATAATACGAAGTCTTATATACATAAAATTCAGATTTTTAATTACGTTCTTCTTTAAAAACTGTTATTTACTTAATATAGCATATATAGACATGTTTAAAAAAA] [+] EMBL AA559441 [TATTTTTNCTCAAAGCCAATGTCAATTGCTGACATTACTGAGTTATTCGGAAAACTTGACAAAAATCATAATGGCCTTGTATCACAAAAAGAAATTAAAGCTTATCTGAGGTCAAATTCTACTAAATATAACTGT AAAGAGGTT AAGG AATTCGTTGG AAAAATTGATGACAACTCGGATGGTC AAATTAGTTTGGAANAACTGACCAAAGCTTTG TCNGG AAATTTAGACATT GCC AAAGCGTGTCATCTAAAGCCACG ATAAATAATACGAAGTCTTATATNCATAAAATTCAGATTTTTAATTAC ] [+] EMBL AA559454 [ CTCAAAGCCAATGTCAATTGCTGACATTACTGAGTTATTCGGAAAACTTGACAAAAATCATAATGGCCTTGTATCACAAAAAGAAATTAAAGCTTATCTGAGGTCAAATTCTACTAAATATAACTGT AAAGAGGTT AAGG AATTCGTTGG AAAAATTGATGACAACTCGGATGGTC AAATTAGTTTGGAANAACTGACCAAAGCTTTG TCAGG AAATTTAGACATT GCC AAAGCGTGTCNTCTAAAGCCNCGAATAAATAATACGAAGTCTTATNTNCCTA ] [+] EMBL AA559419 [ TCAAAGCCAATGTCAATTGCTGACATTACTGAGTTATTCGGAAAACTTGACAAAAATCATAATGGCCTTGTATCACAAAAAGAAATTAAAGCTTATCTGAGGTCAAATTCTACTAAATATAACTGT AAAGAGGTT AAGG AATTCGTTGG AAAAATTGATGACAACTCGGATGGTC AAATTAGTTTGGAANAACTGACCAAAGCTTTG TCAGG AAATTTAGACATT GCC AAAGCGTGTCATCTAAAGCCACG ATAAATAATACGAAGTCTTATATACATAAAATNCAGA ] [+] EMBL AA883025 [ GCCAATGTCAATTGCTGACATTACTGTGTTATTCGGAAAACTTGACAAAAATCATAATGGCCTTGTATCATAAAAAGAAATTAAAGCTTATCTGAGGTCAAATTCTACTAAATATAACTGT AAGAGGTT AAGG AATTCGTTGG AAAATTGta ] [+] EMBL AA559572 [ AATGTCAATTGCTGACNTTACTGAGTTATNCGGAAAACTTGACAAAAATCATAATGGCCTTGTATCACAAAAAGAAATNAAANCTTANCT ] [-] EMBL AA999485 [ tccCTAAATATAACTGTAAAAGAGGTTAAAGG AATTCGTTGG AAAAATTGATGACAACTCGGATGGTC AAATTAGTTTGGAAGAACTGACCAAAGCTTTG TCAGG AAATTTAGACATT GCC AAAGCGTGTCATCTAAAGCCACG ATAAATAATACGAAGTCTTATATACATAAAATTCAGATTTTTAATTACGTTCTTCTTTAAAAACTGTTATTTACTTAATATAGCATATATA ] [-] EMBL AA917193 [ tAATAT ACTGT AAAGAGGTT AAGGAAATTCGTTGG AAAATTG TGACCACTCGGATGGTCAAAATTAGTTTGGAAGAACTGACCAAA CTTTG TCAGG AAATTTAGACATT GCCAAAACCGTGTCATCTAAAGCCACG ATAAATAATACGAAGTCTTATATACATAAAATTCAGATTTTTAATTACGTTCTTCTTTAAAAACTGTTATTTACTTAATATAGCATATATAGACATGTTTAAAAAAA] [+] EMBL AA559749 [ AATTCGTTGGAAAAAATTGATGACAACTCGGATGGTC AAATTAGTTTGGAAGAACTGACCAAAGCTTTGNTCAGGAAAATTTAGACATTGGCC AAAGCGTGTCATCTAAAGCCACG ATAAATAATACGAAGTCTTATATACATAAAATTCAGATTTTTAATTACGTTCTTCTTTAAAAACTGTTATTTACTTAATATAGCATATATA ] consensusID : consensus_9387#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 245 fasta sequence [GGAACTTGACAAATCATAACTTGGCCTTCGTATCACAAAAAGAAATTAAAGCCTTATCTGAGGTCAAATTCTACTAAATAATAACTGTAAAGAGGTTAAGGAATTCCGTTGGAACACATTGATGACCAACTCGGATCGGTCAAATTAGTTTGGAAGACTGACCAAAGCCTTGTCAGGAAATTTGACATTGCCAAAGTCCGTTTCATCTAAGCCACGACAATATACGAGTCCTTATATTCCTTAAA] [+] EMBL AA952813 [GGAACTTGACAAATCATAACTTGGCCTTCGTATCACAAAAAGAAATTAAAGCCTTATCTGAGGTCAAATTCTACTAAATAATAACTGTAAAGAGGTTAAGGAATTCCGTTGGAACACATTGATGACCAACTCGGATCGGTCAAATTAGTTTGGAAGACTGACCAAAGCCTTGTCAGGAAATTTGACATTGCCAAAGTCCGTTTCATCTAAGCCACGACAATATACGAGTCCTTATATTCCTTAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9387#0 TATTTTTNCTCAAAGCCAATGTCAATTGCTGACATTACTGAGTTATTCGGAAAACTTGAC 60 consensus_9387#1 --------------------------------------------------GGAACTTGAC 10 ******** consensus_9387#0 AAAAATCATAATGGCCTT-GTATCACAAAAAGAAATTAAAGC-TTATCTGAGGTCAAATT 118 consensus_9387#1 AAATCATAACTTGGCCTTCGTATCACAAAAAGAAATTAAAGCCTTATCTGAGGTCAAATT 70 *** * ******* *********************** ***************** consensus_9387#0 CTACTAAATA-TAACTGTAAAGAGGTTAAGGAATTC-GTTGGAAAA-ATTGATGAC-AAC 174 consensus_9387#1 CTACTAAATAATAACTGTAAAGAGGTTAAGGAATTCCGTTGGAACACATTGATGACCAAC 130 ********** ************************* ******* * ********* *** consensus_9387#0 TCGGAT-GGTCAAATTAGTTTGGAANAACTGACCAAAGCTTTGTCAGGAAATTTAGACAT 233 consensus_9387#1 TCGGATCGGTCAAATTAGTTTGGAAGA-CTGACCAAAGCCTTGTCAGGAAATTT-GACAT 188 ****** ****************** * *********** ************** ***** consensus_9387#0 TGCCAAAG--CGTGTCATCTAAAGCCACGATAAATAATACGAAGTCTTATATACATAAAA 291 consensus_9387#1 TGCCAAAGTCCGTTTCATCTAA-GCCACGACAA--TATACGAGTCCTTATATTCCTTAAA 245 ******** *** ******** ******* ** ****** ******* * * *** consensus_9387#0 TTCAGATTTTTAATTACGTTCTTCTTTAAAAACTGTTATTTACTTAATATAGCATATATA 351 consensus_9387#1 ------------------------------------------------------------ consensus_9387#0 GACATGTTTAAAAAAA 367 consensus_9387#1 ---------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||