These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9390#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 736 fasta sequence [GAGGCCAGATTCGGCACGAGATGCTGAAAACGAAAAGAAGAAAAAGATGTTAAAAGCTGCCTTAGCTGAAGGGAAAATGCTACCTAAAGAAATTCAAGAAGGTGCTTTACAGTTAAATGAAGAATTAGACTGGAGTGATGATGGCGGTGAAGGAGTTGCTACTAATCAAGATGATGAGTATCTCTGGGCTGGAACTGAAGATCCGCGCGTTGTTATCACTACATCACGTTCTCCTAGCTCAAAACTAAAAGAATTTGCTAAAGAATTACGTTTTCTCATTCCAAATGCTGCCAAAATTAATCGTGGTAACTACTTGAATAAGAATTTGTTGGAAGCTTGTTTAGCAAAACAGATTACCGATGTCATTA-TTGTCAACGAATCACGTGGCGTTCCAGACACTTTGATTATAAGTCATTTGCCCTTTGGTCCAACTGCTATATTCACTTTATACAATGTTCGCACACGTCATGATATGGAAACTATGGGTTGTGGTACCGGAGCGAAAATGCCTCAAACATATCCTAATCATATATTTAAGGGATTAAATTCTAACTTAGGTCAACGTGTTCGTTGTATATTGAAACATTTATTTCCCGTACCGAAAGATGATTCGAAACGTGTGGTTACATGGTACGAAGAAGATGATGTCATATGTTTCAGACATCACACATATAAATATGTGGATAAAAAATTGGAACTAACCGAGCATGGGCCCTCATTCGANTTACGTTTGTAT] [+] EMBL CD080645 [GAGGCCAGATTCGGCACGAG GGCTGAAAACGAAAAGAAGAAAAAGATGTTAAAAGCTGCCTTAGCTGAAGGGAAAATGCTACCTAAAGAAATTCAAGAAGGTGCTTTACAGTTAAATGAAGAATTAGACTGGAGTGATGATGGCGGTGAAGGAGTTGCTACTAATCAAGATGATGAGTATCTCTGGGCTGGAACTGAAGATCCGCGCGTTGTTATCACTACATCACGTTCTCCTAGCTCAAAACTAAAAGAATTTGCTAAAGAATTACGTTTTCTCATTCCAAATGCTGCCAAAATTAATCGTGGTAACTACTTGAATAAGAATTTGTTGGAAGCTTGTTTAGCAAAACAGATTACCGATGTCATTA TTGTCAACGAATCACGTGGCGTTCCAGACACTTTGATTATAAGTCATTTGCCCTTTGGTCCAACTGCTATATTCACTTTATACAATGTTCGCACACGTCATGATATGGAAACTATGGGTTGTGGTACCGGAGCGAAAATGCCTCAAACATATCCTAATCATATATTTAAGGGATTAAATTCTAACTTAGGTCAACGTGTTCGTTGTATATTGAAACATTTATTTCCCGTACCGAAAGATGATTCGAAACGTGTGGTTACATGGTACGAAGAAGATGATGTCATATGTTTCAGACATCACACATATAAATATGTGGATAAAAAATTGGAACTAACCGAGCATGGGCCCTCATTCGANTTACGTTTGTAT] [+] EMBL CD139637 [ CGAGATGCTGAAAACGAAAAGAAGAAAAAGATGTTAAAAGCTGCCTTAGCTGAAGGGAAAATGCTACCTAAAGAAATTCAAGAAGGTGCTTTACAGTTAAATGAAGAATTAGACTGGAGTGATGATGGCGGTGAAGGAGTTGCTACTAATCAAGATGATGAGTATCTCTGGGCTGGAACTGAAGATCCGCGCGTTGTTATCACTACATCACGTTCTCCTAGCTCAGAACTAAAAGAATTTGCTAAAGAATTACGTTTTCTCATTCCAAATGCTGCCAAAATTAATCGTGGTAACTACTTGAAATAGAATTTGTTGGAAGCTTGTTTAGC AAACAGATTACCGATGTCATTATTTGTC ACGAATCAC ] [+] EMBL CD139776 [ CGAGATGCTGAAAACGAAAAGAAGAAAAAGATGTTAAAAGCTGCCTTAGCTGAAGGGAAAATGCTACCTAAAGAAATTCAAGAAGGTGCTTTACAGTTAAATGAAGAATTAGACTGGAGTGATGATGGCGGTGAAGGAGTTGCTACTAATCAAGATGATGAGTATCTCTGGGCTGGAACTGAAGATCCGCGCGTTGTTATCACTACATCACGTTCTCCTAGCTCAAAACTAAAAGAATTTGCTAAAGAATTACGTTTTCTCATTCCAAATGCTGCC AAATTAATC ] [+] EMBL CD137886 [ GAGTATCTCTGGGCTGGAACTGAAGATCCGCGCGTTGTTATCACTACATCACGTTCTCCTAGCTCAAAACTAAAAGAATTTGCTAAAGAATTACGTTTTCTCATTCCAAATGCTGCCAAAATTAATCGTGGTAACTACTTGAATAAGAATTTGTTGGAAGCTTGTTTAGCAAAACAGATTACCGATGTCATTA TTGTCAACGAATCACGTGGCGTTCCAGACACTTTGATTATGAGTCATTTGCCCTTTGGTCCAACTGCTATATTCACTTTATACAATGTTCGCACACGTCATGATATGGAAACTATGGGTTGTGGTACCGGAGCGAAAATGCCTCAAACATATCCTAATCATATATTTAAGGGATTAAATTCTAACTTAGGTCAACGTGTTCGTTGTATATTGAAACATTTATTTCCCGTACCGAAAGATGATTCGAAACGTGTGGTTACATGGTA ] consensusID : consensus_9390#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 594 fasta sequence [TGAAACGCCAAGCCAGATTACGCAGAGAATTTATTTACAGAAGATCAATTGAAGTTCGAGATGCTGAAAACGAAAAGAAGAAAAAGATGTTAAAAGCTGCCTTAGCTGAAGGGAAAATGCTACCTAAAGAAATTCAAGAAGGTGCTTTACAGCTAAATGAAGAATTAGACTGGAGTGATGATGGCGGTGAAGGAGTTGCTACTAATCAAGATGATGAGTATCTCTGGGCTGGAACTGAAGATCCGCGCGTTGTTATCACTACATCACGTTCTCCTAGCTCAAAACTAAAAGAATTTGCTAAAGAATTACGTTTTCTCATTCCAAATGCTGCCAAAATTAATCGTGGTAACTACTTGAATAAGAATTTGTTGGAAGCTTGTTTAGCACAACAGATTACCGATGTCATTATTGTCAACGAATCACGTGGCGTTCCAGACACTTTGATTATAAGTCATTTGCCCTTCGGTCCAACTGCTATATTCACTTTATACAATGTTCGCACACGTCATGATATGGAAACTATGGGTTGTGGTACCGGAGCGAAAATGCCTCAGACATATCCTAATCATATATTTAAGGGATTAAATTCTAACT] [+] EMBL AI976223 [TGAAACGCCAAGCCAGATTACGCAGAGAATTTATTTACAGAAGATCAATTGAAGTTCGAGATGCTGAAAACGAAAAGAAGAAAAAGATGTTAAAAGCTGCCTTAGCTGAAGGGAAAATGCTACCTAAAGAAATTCAAGAAGGTGCTTTACAGCTAAATGAAGAATTAGACTGGAGTGATGATGGCGGTGAAGGAGTTGCTACTAATCAAGATGATGAGTATCTCTGGGCTGGAACTGAAGATCCGCGCGTTGTTATCACTACATCACGTTCTCCTAGCTCAAAACTAAAAGAATTTGCTAAAGAATTACGTTTTCTCATTCCAAATGCTGCCAAAATTAATCGTGGTAACTACTTGAATAAGAATTTGTTGGAAGCTTGTTTAGCACAACAGATTACCGATGTCATTATTGTCAACGAATCACGTGGCGTTCCAGACACTTTGATTATAAGTCATTTGCCCTTCGGTCCAACTGCTATATTCACTTTATACAATGTTCGCACACGTCATGATATGGAAACTATGGGTTGTGGTACCGGAGCGAAAATGCCTCAGACATATCCTAATCATATATTTAAGGGATTAAATTCTAACT] consensusID : consensus_9390#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 555 fasta sequence [GAGGNCTGCAGGTTCGGCACGAGGATCAATTGAAGTTCGAGATGCTGAAAACGAAAAGAAGAAAAAGATGTTAAAAGCTGCCTTAGCTGAAGGGAAAATGCTACCTAAAGAAATTCAAGAAGGTGCTTTACAGTTAAATGAAGAATTAGACTGGAGTGATGATGGCGGTGAAGGAGTTGCTACTAATCAAGATGATGAGTATCTCTGGGCTGGAACTGAAGATCCGCGCGTTGTT-ATCACTACATCACGTTCTCCTAGCTCAAAACTAAAAGAATTTGCTAAAGAATTACGTTTTCTCATTCCAAATGCTGCCANAATTAGGTCGGGGTAACTACTTGAATAAGAATTGGTNGGAAGCTTGTTTAGCAAAACAGATTACCGATGTCATTATTGTCAACGAATCACGTGGGGTTCCAGACACTTGGNCTATAAGTCATTNGCCCCTGGGTCCAACTTGCTATNTTCACTTTAATTCAACCGTTCCGCACACGTCAATNATATTGGAAACTATGGGTCGGNGGNNCCCGGAGGGAAAAATGCCNCAACCATNTCCTA] [+] EMBL SM7201 [GAGGNCTGCAGGTTCGGCACGAGGATCAATTGAAGTTCGAGATGCTGAAAACGAAAAGAAGAAAAAGATGTTAAAAGCTGCCTTAGCTGAAGGGAAAATGCTACCTAAAGAAATTCAAGAAGGTGCTTTACAGTTAAATGAAGAATTAGACTGGAGTGATGATGGCGGTGAAGGAGTTGCTACTAATCAAGATGATGAGTATCTCTGGGCTGGAACTGAAGATCCGCGCGTTGTT ATCACTACATCACGTTCTCCTAGCTCAAAACTAAAAGAATTTGCTA ] [+] EMBL CD139848 [ TGAAGTTCGAGATGCTGAAAACGAAAAGAAGAAAAAGATGTTAAAAGCTGCCTTAGCTGAAGGGAAAATGCTACCTAAAGAAATTCAAGAAGGTGCTTTACAGTTAAATGAAGAATTAGACTGGAGTGATGATGGCGGTGAAGGAGTTGCTACTAATCAAGATGATGAGTATCTCTGGGCTGGAACTGAAGATCCGCGCGTTGTT ATCACTACATCACGTTCTCCTAGCTCAAAACT AAAGAATTTGCTAAAGAA TACGTTTTCTCATT CAAATGCTGCCA ] [+] EMBL CD139592 [ CGAGATGCTGAAAACGAAAAGAAGAAAAAGATGTTAAAAGCTGCCTTAGCTGAAGGGAAAATGCTACCTAAAGAAATTCAAGAAGGTGCTTTACAGTTAAATGAAGAATTAGACTGGAGTGATGATGGCGGTGAAGGAGTTGCTACTAATCAAGATGATGAGTATCTCTGGGCTGGAACTGAAGATCCGCGCGTTGTT ATCACTACATCACGTTCTCCTAGCTCAAAACTAAAAGAATTTGCTAAAGAATTACGTTTTCTCATTCCA ] [+] EMBL SM942 [ AAGATGTTAAAAGCTGNCTTAGNTGAAGGGAAAATGCTACCTAAAGAAATTCAAGAAGGTGCTTTACAGTTAAATGAAGAATTAGACTGGAGTGATGATGGCGGTGAAGGAGTTGCTACTAATCAAGATGATGAGTATCTCTGGGCTGGAACTGAAGATCCGCGCGTTGTTGATCACTACATCACGTGCTCCTAGCTCAAGACTAAAAGAATTTGNTAAAGAATTACGTTTTCTCATTCCAAATGCTGCCANAATTAGGTCGGGGTAACTACTTGAATAAGAATTGGTNGGAAGCTTGTTTAGCAAAACAGATTACCGATGTCATTATTGTCAACGAATCACGTGGGGTTCCAGACACTTGGNCTATAAGTCATTNGCCCCTGGGTCCAACTTGCTATNTTCACTTTAATTCAACCGTTCCGCACACGTCAATNATATTGGAAACTATGGGTCGGNGGNNCCCGGAGGGAAAAATGCCNCAACCATNTCCTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9390#0 ----------------------------------------GAGGCCAGATTCGGCACGAG 20 consensus_9390#1 TGAAACGCCAAGCCAGATTACGCAGAGAATTTATTTACAGAAGATCAATTGAAGTTCGAG 60 consensus_9390#2 -------------------GAGGNCTGCAGGTTCGGCACGAGGATCAATTGAAGTTCGAG 41 * ** * * **** consensus_9390#0 ATGCTGAAAACGAAAAGAAGAAAAAGATGTTAAAAGCTGCCTTAGCTGAAGGGAAAATGC 80 consensus_9390#1 ATGCTGAAAACGAAAAGAAGAAAAAGATGTTAAAAGCTGCCTTAGCTGAAGGGAAAATGC 120 consensus_9390#2 ATGCTGAAAACGAAAAGAAGAAAAAGATGTTAAAAGCTGCCTTAGCTGAAGGGAAAATGC 101 ************************************************************ consensus_9390#0 TACCTAAAGAAATTCAAGAAGGTGCTTTACAGTTAAATGAAGAATTAGACTGGAGTGATG 140 consensus_9390#1 TACCTAAAGAAATTCAAGAAGGTGCTTTACAGCTAAATGAAGAATTAGACTGGAGTGATG 180 consensus_9390#2 TACCTAAAGAAATTCAAGAAGGTGCTTTACAGTTAAATGAAGAATTAGACTGGAGTGATG 161 ******************************** *************************** consensus_9390#0 ATGGCGGTGAAGGAGTTGCTACTAATCAAGATGATGAGTATCTCTGGGCTGGAACTGAAG 200 consensus_9390#1 ATGGCGGTGAAGGAGTTGCTACTAATCAAGATGATGAGTATCTCTGGGCTGGAACTGAAG 240 consensus_9390#2 ATGGCGGTGAAGGAGTTGCTACTAATCAAGATGATGAGTATCTCTGGGCTGGAACTGAAG 221 ************************************************************ consensus_9390#0 ATCCGCGCGTTGTTATCACTACATCACGTTCTCCTAGCTCAAAACTAAAAGAATTTGCTA 260 consensus_9390#1 ATCCGCGCGTTGTTATCACTACATCACGTTCTCCTAGCTCAAAACTAAAAGAATTTGCTA 300 consensus_9390#2 ATCCGCGCGTTGTTATCACTACATCACGTTCTCCTAGCTCAAAACTAAAAGAATTTGCTA 281 ************************************************************ consensus_9390#0 AAGAATTACGTTTTCTCATTCCAAATGCTGCCAAAATTAA-TCGTGGTAACTACTTGAAT 319 consensus_9390#1 AAGAATTACGTTTTCTCATTCCAAATGCTGCCAAAATTAA-TCGTGGTAACTACTTGAAT 359 consensus_9390#2 AAGAATTACGTTTTCTCATTCCAAATGCTGCCANAATTAGGTCGGGGTAACTACTTGAAT 341 ********************************* ***** *** *************** consensus_9390#0 AAGAATTTGTTGGAAGCTTGTTTAGCAAAACAGATTACCGATGTCATTATTGTCAACGAA 379 consensus_9390#1 AAGAATTTGTTGGAAGCTTGTTTAGCACAACAGATTACCGATGTCATTATTGTCAACGAA 419 consensus_9390#2 AAGAATTGGTNGGAAGCTTGTTTAGCAAAACAGATTACCGATGTCATTATTGTCAACGAA 401 ******* ** **************** ******************************** consensus_9390#0 TCACGTGGCGTTCCAGACACTTTGATTATAAGTCATTTGCCCTTTGGTCCAACT-GCTAT 438 consensus_9390#1 TCACGTGGCGTTCCAGACACTTTGATTATAAGTCATTTGCCCTTCGGTCCAACT-GCTAT 478 consensus_9390#2 TCACGTGGGGTTCCAGACACTTGGNCTATAAGTCATTNGCCCCTGGGTCCAACTTGCTAT 461 ******** ************* * *********** **** * ********* ***** consensus_9390#0 ATTCACTTTA-TACAATG--TTCGCACACGTCA-TGATAT-GGAAACTATGGGTTG-TGG 492 consensus_9390#1 ATTCACTTTA-TACAATG--TTCGCACACGTCA-TGATAT-GGAAACTATGGGTTG-TGG 532 consensus_9390#2 NTTCACTTTAATTCAACCGTTCCGCACACGTCAATNATATTGGAAACTATGGGTCGGNGG 521 ********* * *** * *********** * **** ************* * ** consensus_9390#0 TACC--GGAGCGAAAATGCCTCAAACATATCCTAATCATATATTTAAGGGATTAAATTCT 550 consensus_9390#1 TACC--GGAGCGAAAATGCCTCAGACATATCCTAATCATATATTTAAGGGATTAAATTCT 590 consensus_9390#2 NNCCCGGAGGGAAAAATGCCNCAACCATNTCCTA-------------------------- 555 ** * * ******** ** *** ***** consensus_9390#0 AACTTAGGTCAACGTGTTCGTTGTATATTGAAACATTTATTTCCCGTACCGAAAGATGAT 610 consensus_9390#1 AACT-------------------------------------------------------- 594 consensus_9390#2 ------------------------------------------------------------ consensus_9390#0 TCGAAACGTGTGGTTACATGGTACGAAGAAGATGATGTCATATGTTTCAGACATCACACA 670 consensus_9390#1 ------------------------------------------------------------ consensus_9390#2 ------------------------------------------------------------ consensus_9390#0 TATAAATATGTGGATAAAAAATTGGAACTAACCGAGCATGGGCCCTCATTCGANTTACGT 730 consensus_9390#1 ------------------------------------------------------------ consensus_9390#2 ------------------------------------------------------------ consensus_9390#0 TTGTAT 736 consensus_9390#1 ------ consensus_9390#2 ------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||